jgi.p|Nanoce1779_2|592167, mRNA_5331 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592167
Unique NamemRNA_5331
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length597
Alignment locationscaffold_13:187696..188292 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592253
TrackFilteredModels2
ProteinId592167
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:187696..188292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592167gene_5331Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592167mRNA_5331-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5331CDS_5331Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5331 ID=mRNA_5331|Name=jgi.p|Nanoce1779_2|592167|organism=Nannochloropsis oceanica|type=mRNA|length=597bp
CTCCTCCTCCTCCTCCTCCTCCTCGTCTCAAGGCTCGCAGCAGCACGTGT
GGGGGGACATCCTGCCTAAGGGTGGAATAAGCAGCAGCGGCACAAACAGC
TCCACAAACGCGTCAGGCCGCAGCACTAGAAGCAGCAGCAGCGGCAGTGG
CGGTGCCCCTCGCTTTGTCCGCCGCAAGCCCGGCGTGGCCGCCCCGAGCC
AAGCAGCCGAAATTGACTTTGGCAAGGTAACGGGCGCGTTATTTGATCGT
GTGGAAGCGGGTGTGGCGGGGATGCAGGAACTCAATGACCCCTTCATTAT
TAACAGACAAGATGAGGCAGAGTTGGTGTTGGACTTGGGACCGGGTAAAG
GGGCATTTACCTTGCAGAGAGACTGGGCACAAAACCAGCTGGTGTATATG
TCACCGGTTTCCGGTTGTAATAAGTATGCATATGATGGGGGGGAGGGGAG
GTGGTTGAGCGTCGCGGACGACAGACACGATTTGGTGGGGATAATGACGA
GGGACTTGATTCGGATGTGTGTGGGTTGTCCTCAGATAACATAATGAGAA
AAGGGGGTATAAAGTGGTCTGTATTAAAAGTATAAAAAAGAAGTCAC
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protein sequence of jgi.p|Nanoce1779_2|592167

>mRNA_5331-protein ID=mRNA_5331-protein|Name=jgi.p|Nanoce1779_2|592167|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCN
KYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCPQIT*
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mRNA from alignment at scaffold_13:187696..188292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5331 ID=mRNA_5331|Name=jgi.p|Nanoce1779_2|592167|organism=Nannochloropsis oceanica|type=mRNA|length=597bp|location=Sequence derived from alignment at scaffold_13:187696..188292+ (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCGTCTCAAGGCTCGCAGCAGCACGTGT
GGGGGGACATCCTGCCTAAGGGTGGAATAAGCAGCAGCGGCACAAACAGC
TCCACAAACGCGTCAGGCCGCAGCACTAGAAGCAGCAGCAGCGGCAGTGG
CGGTGCCCCTCGCTTTGTCCGCCGCAAGCCCGGCGTGGCCGCCCCGAGCC
AAGCAGCCGAAATTGACTTTGGCAAGGTAACGGGCGCGTTATTTGATCGT
GTGGAAGCGGGTGTGGCGGGGATGCAGGAACTCAATGACCCCTTCATTAT
TAACAGACAAGATGAGGCAGAGTTGGTGTTGGACTTGGGACCGGGTAAAG
GGGCATTTACCTTGCAGAGAGACTGGGCACAAAACCAGCTGGTGTATATG
TCACCGGTTTCCGGTTGTAATAAGTATGCATATGATGGGGGGGAGGGGAG
GTGGTTGAGCGTCGCGGACGACAGACACGATTTGGTGGGGATAATGACGA
GGGACTTGATTCGGATGTGTGTGGGTTGTCCTCAGATAACATAATGAGAA
AAGGGGGTATAAAGTGGTCTGTATTAAAAGTATAAAAAAGAAGTCAC
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Coding sequence (CDS) from alignment at scaffold_13:187696..188292+

>mRNA_5331 ID=mRNA_5331|Name=jgi.p|Nanoce1779_2|592167|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_13:187696..188292+ (Nannochloropsis oceanica)
ATGCAGGAACTCAATGACCCCTTCATTATTAACAGACAAGATGAGGCAGA
GTTGGTGTTGGACTTGGGACCGGGTAAAGGGGCATTTACCTTGCAGAGAG
ACTGGGCACAAAACCAGCTGGTGTATATGTCACCGGTTTCCGGTTGTAAT
AAGTATGCATATGATGGGGGGGAGGGGAGGTGGTTGAGCGTCGCGGACGA
CAGACACGATTTGGTGGGGATAATGACGAGGGACTTGATTCGGATGTGTG
TGGGTTGTCCTCAGATAACATAA
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Synonyms
Publications