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Properties
Property Name | Value |
TranscriptId | 631061 |
Track | FilteredModels2 |
ProteinId | 630975 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_13 | supercontig | scaffold_13:184450..187190 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5330 ID=mRNA_5330|Name=jgi.p|Nanoce1779_2|630975|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp AGTCAGAGGCCGACCGAATGGCGTGCGAACGCGGCTCTTTTTTCCTTTGC TTGCCCCTCTCTCCTGCTGTCCAGGAGTACACGATTTGTTGATATCCCTC CGTTCACTTGCGATGAATCTCCACGTGCCCTGTGTCCAACCAGCTCTCTC GCCTAGTAGACAGAAGCGCGCCCAAACTATTTTGTTGTGATTGCCAGCTC GGGAGCGGGGAATACCAAAGCATCAACAAGCTCCTCGAAGATGCCACCAT TAGTCACATACAAGGTCCTAGCCCGGCTACTGTTCACCACGGTCGCTTCC CTAGCAACACACGAAGGGGCACATGCGTCTTCCAGCCTTAATTTTCTCTC GATTGGTGATCATGGCATGCGCAACGATAAGACCGAGGCGATTGTGGCCC GGATGGCTGCGGTCAAGGAGGAGATTGATGCCTCCTTCGTCTTGTTGGCT GGAGACAATTTCTACCCCAAAGGTATCGCCAGCGTGGACGATCCTCTGTG GGAAAGTCACTTCACAGGCCTCTTCACTCCCGAAGCCTTCCCTGTGCCTT TTTACCCTGTCCGCGGCAATCACGACTATCGTTCTCCAAACCCCGACGCA CAGTTAGAGTACTATACCAAGCATGGGGAGGAGGGGCGATGGATCTTCCC TGCTGCTTACTATCAAACTAAAAAGACCTTAGCGGATGGGACGACCATAG ATTTCATCTTCCTTGACACCATTCTCCTCGCCCCGGAGGCATCCGAATCG GAGACAGCAATTAATTTACATGACGATGAGCAGAGAAAAGAGAAGCAATA CGTGTGGTTGGAAGCCGCTCTGGCTGAGAGCACGGCGGATTGGTTGTTGG TGGTTGGCCATCATCCCGTCTTCTCGGGGGGAGAGCATGGGGACACCCCT TCATTAGTGGCTCGGCTGTTGCCGCTGTTGGAAAAGCATCATGTGGATAT GTACGTGTCGGGGCATGATCACACTTTGCAGCACCTTCAGCACCTTCCCA CGACGCATACCCAGTTTTTCGTGAATGGGAATGGGGCCAAGATGGGGCAT GTGCGGAACGTCACGCAGGCTCACGTGAGGAGGGCGGAGGTAAAGCTGGG ATTTATGTCTCATGAGCTGACCAGGGAGAGCATGATTACTAAAGCGATTG ATAGGGAGGGCGGGGTGGTGTTTGAGTACACGCAGCTGCCTCGACGAAGG GCCGCGTTGATTGCGGAGCTGGAGGAGGGGCGGGGGACAAATGAGGGAGA TGATGAGGAAAGGCCGTTACACGGTTCCATGCCCGCCCTGCCTCGGGAGC AGCTTGTTGGTGCGATGAAAGGGGCGCCGGTCACGTGGGAAGAGATAGAG GCGGAAAATTACTCCTCTCCCGCTTTGCGTGGTGTTAGAAGTAAGAGTCG TTTGTTTCTTTTACAGAGCAGCAAGAGGGAGAGGAAGAAGAGGGGGCGGG GCAAAGAAAAGGTGAAAAAGCCGTTCGCACAGCTTCTGGAGCATCCCTGC CAGGCGGGGGATCTTGGTGAGAAAAATGCGGAGGAAGGGAAGCAGCAGCT ACCTTGAGCTAGTTTTGTGTATATATTATGTGAATGGTGAGGTTGTTTGG AGAGGTCATCAGAGATGTTTTTGGGGAGGATGCGGCGAGGAGTGGGTGTG TGAGGAAGTGCTGACAGGGATTGACGGTCACGCGCGCCCGGCATGCATTT TGACACATAACCCTAACCCTAAATTACAGAGAAGGAATAGGATTCCTACT CTATTTTTAGAATGTGAGTTCATAAGGACTCGGGAGCAAGGATTTTTTTG ATTGGGCAAAGCAAAGTATAAAAGCTACGAAAAATGAGAGCTAACTCAAG GTAAGTGTGCAATTAAAAAGGCAATGTTAAAGTCAAAAAACACAATAACG ACATGTGCTC back to topprotein sequence of jgi.p|Nanoce1779_2|630975 >mRNA_5330-protein ID=mRNA_5330-protein|Name=jgi.p|Nanoce1779_2|630975|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp MPPLVTYKVLARLLFTTVASLATHEGAHASSSLNFLSIGDHGMRNDKTEA IVARMAAVKEEIDASFVLLAGDNFYPKGIASVDDPLWESHFTGLFTPEAF PVPFYPVRGNHDYRSPNPDAQLEYYTKHGEEGRWIFPAAYYQTKKTLADG TTIDFIFLDTILLAPEASESETAINLHDDEQRKEKQYVWLEAALAESTAD WLLVVGHHPVFSGGEHGDTPSLVARLLPLLEKHHVDMYVSGHDHTLQHLQ HLPTTHTQFFVNGNGAKMGHVRNVTQAHVRRAEVKLGFMSHELTRESMIT KAIDREGGVVFEYTQLPRRRAALIAELEEGRGTNEGDDEERPLHGSMPAL PREQLVGAMKGAPVTWEEIEAENYSSPALRGVRSKSRLFLLQSSKRERKK RGRGKEKVKKPFAQLLEHPCQAGDLGEKNAEEGKQQLP* back to topmRNA from alignment at scaffold_13:184450..187190- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5330 ID=mRNA_5330|Name=jgi.p|Nanoce1779_2|630975|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp|location=Sequence derived from alignment at scaffold_13:184450..187190- (Nannochloropsis oceanica) AGTCAGAGGCCGACCGAATGGCGTGCGAACGCGGCTCTTTTTTCCTTTGC
TTGCCCCTCTCTCCTGCTGTCCAGGAGTACACGATTTGTTGATATCCCTC
CGTTCACTTGCGATGAATCTCCACGTGCCCTGTGTCCAACCAGCTCTCTC
GCCTAGTAGACAGAAGCGCGCCCAAACTATTTTGTTGTGATTGCCAGCTC
GGGAGCGGGGAATACCAAAGCATCAACAAGCTCCTCGAAGATGCCACCAT
TAGTCACATACAAGGTCCTAGCCCGGCTACTGTTCACCACGGTCGCTTCC
CTAGCAACACACGAAGGGGCACATGCGTCTTCCAGCCTTAATTTTCTCTC
GGTACGTGCGCACTACATATCCATTTCCCCCCCGTCCGGGGCTCCCTCAA
AACTCACCTGTTACGAAGGCCTCCTTGCCCCACGCCCACTTCCCTTCTAT
ATTGTCATTTTCTGGCATAAATTCCACACAGATTGGTGATCATGGCATGC
GCAACGATAAGACCGAGGCGATTGTGGCCCGGATGGCTGCGGTCAAGGAG
GAGATTGATGCCTCCTTCGTCTTGTTGGCTGGAGGTGAGTGTGTGTTGCG
GGGGGCGTGCACCAGGGCAAACAAGGAGGAAAGTGAACGAGTTGGTTGGC
TACCATTAACGACAAGCGTTCTCAAGTTGCATTAGAAACCAACCTGGCAG
CCTTGACCCTGTCCCCTCTCCCTCACCCTGCCATCTTCGGCATTATAATA
TAAATAAGGAGTTGCTATCCCGCCGCTATCTTGCAATTGTCCGCCTGACA
CACCAAGGTGCTTTCCATGCCCCATTTTCCCCAATGTCGGGAACTGGACG
TGTTGCTCCTTTATTCATGCCAGCGGCCATCCGAAATGCCCTCAATTTCT
CACTTTCCTCCTCCCTCCGTCCAAGGGTTAGGGTTAACCCTAACAGAGAG
CAATATCTCTTTATAAGTGAATCTTCCTGTTCTAGGTAGAGAATCTTCTC
CTAACATCCCATTTTAACGTCCCCTCCGCCATTTTTTCCTCCCAATCTAT
TCATCACAGACAATTTCTACCCCAAAGGTATCGCCAGCGTGGACGATCCT
CTGTGGGAAAGTCACTTCACAGGCCTCTTCACTCCCGAAGCCTTCCCTGT
GCCTTTTTACCCTGTCCGCGGCAATCACGACTATCGTTCTCCAAACCCCG
ACGCACAGTTAGAGTACTATACCAAGCATGGGGAGGAGGGGCGATGGATC
TTCCCTGCTGCTTACTATCAAACTAAAAAGACCTTAGCGGATGGGACGAC
CATAGATTTCATCTTCCTTGACACCATTCTCCTCGCCCCGGAGGCATCCG
AATCGGAGACAGCAATTAATTTACATGACGATGAGCAGAGAAAAGAGAAG
CAATACGTGTGGTTGGAAGCCGCTCTGGCTGAGAGCACGGCGGATTGGTT
GTTGGTGGTTGGCCATCATCCCGTCTTCTCGGGGGGAGAGCATGGGGACA
CCCCTTCATTAGTGGCTCGGCTGTTGCCGCTGTTGGAAAAGCATCATGTG
GATATGTACGTGTCGGGGCATGATCACACTTTGCAGCACCTTCAGCACCT
TCCCACGACGCATACCCAGTTTTTCGTGAATGGGAATGGGGCCAAGATGG
GGCATGTGCGGAACGTCACGCAGGCTCACGTGAGGAGGGCGGAGGTAAAG
CTGGGATTTATGTCTCATGAGCTGACCAGGGAGAGCATGATTACTAAAGC
GATTGATAGGGAGGGCGGGGTGGTGTTTGAGTACACGCAGCTGCCTCGAC
GAAGGGCCGCGTTGATTGCGGAGCTGGAGGAGGGGCGGGGGACAAATGAG
GGAGATGATGAGGAAAGGCCGTTACACGGTTCCATGCCCGCCCTGCCTCG
GGAGCAGCTTGTTGGTGCGATGAAAGGGGCGCCGGTCACGTGGGAAGAGA
TAGAGGCGGAAAATTACTCCTCTCCCGCTTTGCGTGGTGTTAGAAGTAAG
AGGTATTACCTTTCGAGCAGCAGCACCAGCAGCAGAGCCGGTGATGTCAA
ACAGCACCACGCATATTTGAGAGGACATGAAACACCTTTGATTTTGTTGA
TGGGCTTAGTAGGAATGACTATTGTCACGCTTACAATCCTCTTGAAACGT
CGTGCGCCCTCTTTCGCCGCTTCTTCCCCCCCGCCATACCATCACTCTTT
TTGTTTGGTCGGCTCCTCGTACTTGCAGTCGTTTGTTTCTTTTACAGAGC
AGCAAGAGGGAGAGGAAGAAGAGGGGGCGGGGCAAAGAAAAGGTGAAAAA
GCCGTTCGCACAGCTTCTGGAGCATCCCTGCCAGGCGGGGGATCTTGGTG
AGAAAAATGCGGAGGAAGGGAAGCAGCAGCTACCTTGAGCTAGTTTTGTG
TATATATTATGTGAATGGTGAGGTTGTTTGGAGAGGTCATCAGAGATGTT
TTTGGGGAGGATGCGGCGAGGAGTGGGTGTGTGAGGAAGTGCTGACAGGG
ATTGACGGTCACGCGCGCCCGGCATGCATTTTGACACATAACCCTAACCC
TAAATTACAGAGAAGGAATAGGATTCCTACTCTATTTTTAGAATGTGAGT
TCATAAGGACTCGGGAGCAAGGATTTTTTTGATTGGGCAAAGCAAAGTAT
AAAAGCTACGAAAAATGAGAGCTAACTCAAGGTAAGTGTGCAATTAAAAA
GGCAATGTTAAAGTCAAAAAACACAATAACGACATGTGCTC back to topCoding sequence (CDS) from alignment at scaffold_13:184450..187190- >mRNA_5330 ID=mRNA_5330|Name=jgi.p|Nanoce1779_2|630975|organism=Nannochloropsis oceanica|type=CDS|length=5268bp|location=Sequence derived from alignment at scaffold_13:184450..187190- (Nannochloropsis oceanica) TCGTTTGTTTCTTTTACAGAGCAGCAAGAGGGAGAGGAAGAAGAGGGGGC GGGGCAAAGAAAAGGTGAAAAAGCCGTTCGCACAGCTTCTGGAGCATCCC TGCCAGGCGGGGGATCTTGGTGAGAAAAATGCGGAGGAAGGGAAGCAGCA GCTACCTTGAACAATTTCTACCCCAAAGGTATCGCCAGCGTGGACGATCC TCTGTGGGAAAGTCACTTCACAGGCCTCTTCACTCCCGAAGCCTTCCCTG TGCCTTTTTACCCTGTCCGCGGCAATCACGACTATCGTTCTCCAAACCCC GACGCACAGTTAGAGTACTATACCAAGCATGGGGAGGAGGGGCGATGGAT CTTCCCTGCTGCTTACTATCAAACTAAAAAGACCTTAGCGGATGGGACGA CCATAGATTTCATCTTCCTTGACACCATTCTCCTCGCCCCGGAGGCATCC GAATCGGAGACAGCAATTAATTTACATGACGATGAGCAGAGAAAAGAGAA GCAATACGTGTGGTTGGAAGCCGCTCTGGCTGAGAGCACGGCGGATTGGT TGTTGGTGGTTGGCCATCATCCCGTCTTCTCGGGGGGAGAGCATGGGGAC ACCCCTTCATTAGTGGCTCGGCTGTTGCCGCTGTTGGAAAAGCATCATGT GGATATGTACGTGTCGGGGCATGATCACACTTTGCAGCACCTTCAGCACC TTCCCACGACGCATACCCAGTTTTTCGTGAATGGGAATGGGGCCAAGATG GGGCATGTGCGGAACGTCACGCAGGCTCACGTGAGGAGGGCGGAGGTAAA GCTGGGATTTATGTCTCATGAGCTGACCAGGGAGAGCATGATTACTAAAG CGATTGATAGGGAGGGCGGGGTGGTGTTTGAGTACACGCAGCTGCCTCGA CGAAGGGCCGCGTTGATTGCGGAGCTGGAGGAGGGGCGGGGGACAAATGA GGGAGATGATGAGGAAAGGCCGTTACACGGTTCCATGCCCGCCCTGCCTC GGGAGCAGCTTGTTGGTGCGATGAAAGGGGCGCCGGTCACGTGGGAAGAG ATAGAGGCGGAAAATTACTCCTCTCCCGCTTTGCGTGGTGTTAGAAGTAA GAGATTGGTGATCATGGCATGCGCAACGATAAGACCGAGGCGATTGTGGC CCGGATGGCTGCGGTCAAGGAGGAGATTGATGCCTCCTTCGTCTTGTTGG CTGGAGATGCCACCATTAGTCACATACAAGGTCCTAGCCCGGCTACTGTT CACCACGGTCGCTTCCCTAGCAACACACGAAGGGGCACATGCGTCTTCCA GCCTTAATTTTCTCTCGTCGTTTGTTTCTTTTACAGAGCAGCAAGAGGGA GAGGAAGAAGAGGGGGCGGGGCAAAGAAAAGGTGAAAAAGCCGTTCGCAC AGCTTCTGGAGCATCCCTGCCAGGCGGGGGATCTTGGTGAGAAAAATGCG GAGGAAGGGAAGCAGCAGCTACCTTGAACAATTTCTACCCCAAAGGTATC GCCAGCGTGGACGATCCTCTGTGGGAAAGTCACTTCACAGGCCTCTTCAC TCCCGAAGCCTTCCCTGTGCCTTTTTACCCTGTCCGCGGCAATCACGACT ATCGTTCTCCAAACCCCGACGCACAGTTAGAGTACTATACCAAGCATGGG GAGGAGGGGCGATGGATCTTCCCTGCTGCTTACTATCAAACTAAAAAGAC CTTAGCGGATGGGACGACCATAGATTTCATCTTCCTTGACACCATTCTCC TCGCCCCGGAGGCATCCGAATCGGAGACAGCAATTAATTTACATGACGAT GAGCAGAGAAAAGAGAAGCAATACGTGTGGTTGGAAGCCGCTCTGGCTGA GAGCACGGCGGATTGGTTGTTGGTGGTTGGCCATCATCCCGTCTTCTCGG GGGGAGAGCATGGGGACACCCCTTCATTAGTGGCTCGGCTGTTGCCGCTG TTGGAAAAGCATCATGTGGATATGTACGTGTCGGGGCATGATCACACTTT GCAGCACCTTCAGCACCTTCCCACGACGCATACCCAGTTTTTCGTGAATG GGAATGGGGCCAAGATGGGGCATGTGCGGAACGTCACGCAGGCTCACGTG AGGAGGGCGGAGGTAAAGCTGGGATTTATGTCTCATGAGCTGACCAGGGA GAGCATGATTACTAAAGCGATTGATAGGGAGGGCGGGGTGGTGTTTGAGT ACACGCAGCTGCCTCGACGAAGGGCCGCGTTGATTGCGGAGCTGGAGGAG GGGCGGGGGACAAATGAGGGAGATGATGAGGAAAGGCCGTTACACGGTTC CATGCCCGCCCTGCCTCGGGAGCAGCTTGTTGGTGCGATGAAAGGGGCGC CGGTCACGTGGGAAGAGATAGAGGCGGAAAATTACTCCTCTCCCGCTTTG CGTGGTGTTAGAAGTAAGAGATTGGTGATCATGGCATGCGCAACGATAAG ACCGAGGCGATTGTGGCCCGGATGGCTGCGGTCAAGGAGGAGATTGATGC CTCCTTCGTCTTGTTGGCTGGAGATGCCACCATTAGTCACATACAAGGTC CTAGCCCGGCTACTGTTCACCACGGTCGCTTCCCTAGCAACACACGAAGG GGCACATGCGTCTTCCAGCCTTAATTTTCTCTCGTCGTTTGTTTCTTTTA CAGAGCAGCAAGAGGGAGAGGAAGAAGAGGGGGCGGGGCAAAGAAAAGGT GAAAAAGCCGTTCGCACAGCTTCTGGAGCATCCCTGCCAGGCGGGGGATC TTGGTGAGAAAAATGCGGAGGAAGGGAAGCAGCAGCTACCTTGAACAATT TCTACCCCAAAGGTATCGCCAGCGTGGACGATCCTCTGTGGGAAAGTCAC TTCACAGGCCTCTTCACTCCCGAAGCCTTCCCTGTGCCTTTTTACCCTGT CCGCGGCAATCACGACTATCGTTCTCCAAACCCCGACGCACAGTTAGAGT ACTATACCAAGCATGGGGAGGAGGGGCGATGGATCTTCCCTGCTGCTTAC TATCAAACTAAAAAGACCTTAGCGGATGGGACGACCATAGATTTCATCTT CCTTGACACCATTCTCCTCGCCCCGGAGGCATCCGAATCGGAGACAGCAA TTAATTTACATGACGATGAGCAGAGAAAAGAGAAGCAATACGTGTGGTTG GAAGCCGCTCTGGCTGAGAGCACGGCGGATTGGTTGTTGGTGGTTGGCCA TCATCCCGTCTTCTCGGGGGGAGAGCATGGGGACACCCCTTCATTAGTGG CTCGGCTGTTGCCGCTGTTGGAAAAGCATCATGTGGATATGTACGTGTCG GGGCATGATCACACTTTGCAGCACCTTCAGCACCTTCCCACGACGCATAC CCAGTTTTTCGTGAATGGGAATGGGGCCAAGATGGGGCATGTGCGGAACG TCACGCAGGCTCACGTGAGGAGGGCGGAGGTAAAGCTGGGATTTATGTCT CATGAGCTGACCAGGGAGAGCATGATTACTAAAGCGATTGATAGGGAGGG CGGGGTGGTGTTTGAGTACACGCAGCTGCCTCGACGAAGGGCCGCGTTGA TTGCGGAGCTGGAGGAGGGGCGGGGGACAAATGAGGGAGATGATGAGGAA AGGCCGTTACACGGTTCCATGCCCGCCCTGCCTCGGGAGCAGCTTGTTGG TGCGATGAAAGGGGCGCCGGTCACGTGGGAAGAGATAGAGGCGGAAAATT ACTCCTCTCCCGCTTTGCGTGGTGTTAGAAGTAAGAGATTGGTGATCATG GCATGCGCAACGATAAGACCGAGGCGATTGTGGCCCGGATGGCTGCGGTC AAGGAGGAGATTGATGCCTCCTTCGTCTTGTTGGCTGGAGATGCCACCAT TAGTCACATACAAGGTCCTAGCCCGGCTACTGTTCACCACGGTCGCTTCC CTAGCAACACACGAAGGGGCACATGCGTCTTCCAGCCTTAATTTTCTCTC GTCGTTTGTTTCTTTTACAGAGCAGCAAGAGGGAGAGGAAGAAGAGGGGG CGGGGCAAAGAAAAGGTGAAAAAGCCGTTCGCACAGCTTCTGGAGCATCC CTGCCAGGCGGGGGATCTTGGTGAGAAAAATGCGGAGGAAGGGAAGCAGC AGCTACCTTGAACAATTTCTACCCCAAAGGTATCGCCAGCGTGGACGATC CTCTGTGGGAAAGTCACTTCACAGGCCTCTTCACTCCCGAAGCCTTCCCT GTGCCTTTTTACCCTGTCCGCGGCAATCACGACTATCGTTCTCCAAACCC CGACGCACAGTTAGAGTACTATACCAAGCATGGGGAGGAGGGGCGATGGA TCTTCCCTGCTGCTTACTATCAAACTAAAAAGACCTTAGCGGATGGGACG ACCATAGATTTCATCTTCCTTGACACCATTCTCCTCGCCCCGGAGGCATC CGAATCGGAGACAGCAATTAATTTACATGACGATGAGCAGAGAAAAGAGA AGCAATACGTGTGGTTGGAAGCCGCTCTGGCTGAGAGCACGGCGGATTGG TTGTTGGTGGTTGGCCATCATCCCGTCTTCTCGGGGGGAGAGCATGGGGA CACCCCTTCATTAGTGGCTCGGCTGTTGCCGCTGTTGGAAAAGCATCATG TGGATATGTACGTGTCGGGGCATGATCACACTTTGCAGCACCTTCAGCAC CTTCCCACGACGCATACCCAGTTTTTCGTGAATGGGAATGGGGCCAAGAT GGGGCATGTGCGGAACGTCACGCAGGCTCACGTGAGGAGGGCGGAGGTAA AGCTGGGATTTATGTCTCATGAGCTGACCAGGGAGAGCATGATTACTAAA GCGATTGATAGGGAGGGCGGGGTGGTGTTTGAGTACACGCAGCTGCCTCG ACGAAGGGCCGCGTTGATTGCGGAGCTGGAGGAGGGGCGGGGGACAAATG AGGGAGATGATGAGGAAAGGCCGTTACACGGTTCCATGCCCGCCCTGCCT CGGGAGCAGCTTGTTGGTGCGATGAAAGGGGCGCCGGTCACGTGGGAAGA GATAGAGGCGGAAAATTACTCCTCTCCCGCTTTGCGTGGTGTTAGAAGTA AGAGATTGGTGATCATGGCATGCGCAACGATAAGACCGAGGCGATTGTGG CCCGGATGGCTGCGGTCAAGGAGGAGATTGATGCCTCCTTCGTCTTGTTG GCTGGAGATGCCACCATTAGTCACATACAAGGTCCTAGCCCGGCTACTGT TCACCACGGTCGCTTCCCTAGCAACACACGAAGGGGCACATGCGTCTTCC AGCCTTAATTTTCTCTCG back to top
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