jgi.p|Nanoce1779_2|244474, mRNA_533 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|244474
Unique NamemRNA_533
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length608
Alignment locationscaffold_3:1290544..1291486 +

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Properties
Property NameValue
TranscriptId244560
TrackFilteredModels2
ProteinId244474
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1290544..1291486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|244474gene_533Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|244474mRNA_533-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_533CDS_533Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_533 ID=mRNA_533|Name=jgi.p|Nanoce1779_2|244474|organism=Nannochloropsis oceanica|type=mRNA|length=608bp
ACCGTTCAATTTCATTCATTGCGAGAGCACTGCCATCCCCATTCGGCAAC
GTGCTCGTGAGACGTAGGTCACATTCTCGCGGCCTTTCCGCCATGGTCAG
GAGCCGTGCGAATCCAGCAATGGTGACATTTTTTCTCACGTTGAGCTTCT
GCTTCTACAAAAATGCCGGGCAGCATGCTATCTTCATGCTTTTTCGCCAA
AAAAATCGTCGGGTTAGCGTTAGGGTGCTCGTCACCCTCCTTCATCGCTT
GGTCCAGCCACCCGCTGTAGGGTTCCTGCATCAAAGATGCGCACACGCTC
TTATTTCGCATTTGAGTGACAATAACAAGAGTCAGGAAAAAAATATATTG
GAAAACAAAAGATTTACCGTCGAGTTTGAACAAGCATACAAGGCGGGGTG
GGGTGTCTGGGGTATATCTGCGAGTTTATATCGAGTGCGTATCTTCTGGG
ATTTGGGTCGAAGAATAATTTTGGACGAAACTCGCTGGAAATCCCGGGAA
ATCCTACCCCCCTTAAGCCGGTGATATGGGCCATGCTCAACAGATGACCA
ATGGGTCATTCGGTATGATCACTTTTACTACATCCACATCCACCCCAAAG
CTCTCTAC
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protein sequence of jgi.p|Nanoce1779_2|244474

>mRNA_533-protein ID=mRNA_533-protein|Name=jgi.p|Nanoce1779_2|244474|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MVRSRANPAMVTFFLTLSFCFYKNAGQHAIFMLFRQKNRRVSVRVLVTLL
HRLVQPPAVGFLHQRCAHALISHLSDNNKSQEKNILENKRFTVEFEQAYK
AGWGVWGISASLYRVRIFWDLGRRIILDETRWKSREILPPLSR*
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mRNA from alignment at scaffold_3:1290544..1291486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_533 ID=mRNA_533|Name=jgi.p|Nanoce1779_2|244474|organism=Nannochloropsis oceanica|type=mRNA|length=943bp|location=Sequence derived from alignment at scaffold_3:1290544..1291486+ (Nannochloropsis oceanica)
ACCGTTCAATTTCATTCATTGCGAGAGCACTGCCATCCCCATTCGGCAAC
GTGCTCGTGAGACGTAGGTCACATTCTCGCGGCCTTTCCGCCATGGTCAG
GAGCCGTGCGAATCCAGCAATGGTGACATTTTTTCTCACGTTGAGCTTCT
GCTTCTACAAAAATGCCGGGCAGCATGCTATCTTCATGCTTTTTCGCCAA
AAAAATCGTCGGGTTAGCGTTAGGGTGCTCGTCACCCTCCTTCATCGCTT
GGTCCAGCCACCCGCTGTAGGGTTCCTGCATCAAAGATGCGCACACGCTC
TTATTTCGCATTTGAGTGACAATAACAAGAGTCAGGAAAAAAATATATTG
GAAAACAAAAGATTTACCGTCGAGTTTGAACAAGCATACAAGGCGGGGTG
GGGTGTCTGGGGTATATCTGCGAGTTTATATCGAGTGCGTATCTTCTGGG
ATTTGGGTCGAAGAATAATTTTGGACGAAACTCGCTGGAAATCCCGGGAA
ATCCTACCCCCCTTAAGCCGGTGATATGGGCCATGCTCAACAGATGACCA
ATGGGTCATTCGGTATGATCACTTTTACTACATCCACATCCACGTAAGTC
CTAACTATCTCGCTGAAGGTACTGATCACGGCCGGGTTATCTTGTTCATC
ACTTTCCATCACTTTCTCCATCTTTTCCCGCCTTCAATTGATTCAGATTG
CCCAGAATCATCGTTTCAGCCCTTTAATATCAAATGCAAACAACATAGAC
CTATATCACATACGTGCAAGTACAGACCCAGTCATTTTGTAGAAGAAGCT
CAAGCTTTACCAACCCTCGTACAGCATGGAATTAAATTTGCCATGTTTTC
CTGTCATCCATCCTTAGCCCGGGTTTTCAAATTCTTGACCTTATCTCTTT
TTTGCCCCTGCGCCGCACACACGCATAGCCCAAAGCTCTCTAC
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Coding sequence (CDS) from alignment at scaffold_3:1290544..1291486+

>mRNA_533 ID=mRNA_533|Name=jgi.p|Nanoce1779_2|244474|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_3:1290544..1291486+ (Nannochloropsis oceanica)
ATGGTCAGGAGCCGTGCGAATCCAGCAATGGTGACATTTTTTCTCACGTT
GAGCTTCTGCTTCTACAAAAATGCCGGGCAGCATGCTATCTTCATGCTTT
TTCGCCAAAAAAATCGTCGGGTTAGCGTTAGGGTGCTCGTCACCCTCCTT
CATCGCTTGGTCCAGCCACCCGCTGTAGGGTTCCTGCATCAAAGATGCGC
ACACGCTCTTATTTCGCATTTGAGTGACAATAACAAGAGTCAGGAAAAAA
ATATATTGGAAAACAAAAGATTTACCGTCGAGTTTGAACAAGCATACAAG
GCGGGGTGGGGTGTCTGGGGTATATCTGCGAGTTTATATCGAGTGCGTAT
CTTCTGGGATTTGGGTCGAAGAATAATTTTGGACGAAACTCGCTGGAAAT
CCCGGGAAATCCTACCCCCCTTAAGCCGGTGA
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Synonyms
Publications