Properties
| Property Name | Value |
|---|
| TranscriptId | 556434 |
| Track | FilteredModels2 |
| ProteinId | 556348 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:177876..180563 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5328 ID=mRNA_5328|Name=jgi.p|Nanoce1779_2|556348|organism=Nannochloropsis oceanica|type=mRNA|length=2552bp
CGACAAACGCTGACGGTTGGAGGCATGGTGGGAGGCGGCGGCCCAGGACA
TTTCGCTTCGTCATACATGTTCTCACTCTAAAGCACAACTCCAAGCTCAC
CCAAGCAGATATCGGAAGACAAAATGACTGTGGCGACAGCGCCGTGATTG
GCAGATAAGCTGCCAACACAGGCGCCGGCGGCAAGGAAATGGACGGCCAG
CAGCAGTCCTGTTCCGCCGAGTATCTAACAAAAAAAGCACTGCATCGATG
ATGCCGCCTACTTACTAAACTAAATAATATACGCTTAATATCAACTCTTA
CGTGGACGTTTCGCTAAAAGGAAAGTAGGAAGAAGCACACATGCTGCGTT
CCTTAGGCTGCGCAATGCTCTTAGTTGCCTTGCTCCTCACTTATGCCCCA
TTTCCCCATATCCCGTCCAATCCATACCACGTCGACACTCTTACAACCAA
TACACAAGGGTCATGTTCAGTGGCATTTTCCCCAAGAAGCCGGACACGGC
GGGGGAGAAGGCCCTAGCACAGGCCTTGGGAGGGGGCGGGGAGGACGACG
ATGACAGCAGCAGCAGGAGCAAAAAGGGCGGCGGCAAGGGTACCGGCTTG
TTTGATCCGTCGGGACTGGAGCGGGCCGCCAAAGCCGCGAAAGAACTCGA
TAAATCTACCAATGCCCGAGAAGCGTTGAAGCTGATTGAGCTGCAAGAGG
TGACGAAGCAACGCGAGGCAGACTCCAGGCGGACCGAGTACGAGGCCCAC
GTCAAGAGCTTAGAAATCCAACGCGCCCAAAAAGAAGGGGAAGAAGCCCG
CAAGACCCTCGACTCCCAAACGGAGCATGAGAAGCGTCGGGCAGAATATC
GCGATCAGCTGGAGCGCAAGCGGTATGTTGATCAGCTGAATGCAGAAAAG
TACCGAAAAGAGGAAGAGCTGCGGAAGCAGGAAGAGTACCTCGCCAAGCA
AGAATCCATCAAACGCAAGACCCTAGAATATGAAGCTGAACTCCGGCAAC
AAACCGAATTGGCACGGGTCAAGGCCGAGACGGAGGGGAGGATCAAGCAA
GAGAGACAGAACCATGATTTGAGGGTCGCTCAGGCACGGGCGGAAGCTAA
GGAGTATAGGGAGACGGTGTTAGAGGGGATTAGACTTGCCAGCGTTCAAG
TGGGGAAGGGGCTCCAGGAGTTTTTAGCGGACAAAGAACGGCTGACATCA
GCAGCAGTGGCCCTCTCGGCGTTAGCGCTCGGGATTTACACGGCGAAGAC
CTCCACTGGGGTAGCAGGACGGTATATCGAAGCTAGGATGGGTAAGCCCT
CCTTGGTCCGCGACACATCCCGACGGACTGCTCTACAGGTGCTGAAGAAT
CCCGTACCAACCCTCCGTCGGCTCCTCACCTCGGCCAAAGCTGAGGACGC
TCTAAAGGGGGTGATCCTCGAGCAGGGGTTAACGGAACGTTTGACGCGAG
TGGCAATTTCCACGGCCAATACCAAGGCGAACGGCGCACCTTTCCGAAAC
CTGCTTTTGCACGGGCCACCCGGGACGGGGAAAACATTATTTGCCAAGGG
TTTAGCGGCAAACAGTGGGTTGGATTATGCGATTTTGACAGGGGGGGATG
TGGCACCCTTGGGGAAGGAGGCCGTGACGGAGATTCATAAGGTTTTCGAC
TGGGCGCAAACGACGAGGAAGGGCGTGCTGTTGTTTGTGGATGAGGCAGA
CGCTTTTCTCCGGAGAAGGAGTACTGAGCACATGTCGGAGGAGTTAAGGA
ATGCGTTGAATGCCTTCTTGTATCGAACGGGGGAGGCCAGCGATAAGTTT
ATGGTGGTGTTTGCGAGCAACCAGCCCGAGCAGTTTGATTGGGCAATCAA
TGACCGCATTGACGAAATGGTCGATTTTGATTTGCCCGGGGAAGAAGAAC
GCTTGCAAATGGTGACGATGTACTTGGAGAAATACGTGCTGAATCCTCCG
TCGGCAAAGGCAAGGCCGATTACAGTCATGGGAGTTGGGGAGGAGGAGGT
GAAGGAGGCGGCGAGGCTGACGGTGGGGTTCTCGGGGCGGGAGATATCCA
AGCTGGCGATTGCGTGGCAGGCGGCGGCTTATGGTGCGAGTGGGGAGGCA
GCTGTTTTGGACAAAGAATTGTTTGTGAGGGTGTTAGATCAGCACCTGAT
GGCGAAAAGGAAGAAGAAGGGCTGGCTGGATGCGGCCTTGTCGACGTTGC
CCGGCGCGGGAGGGAAGGAAGGAGTTGGGGCGTTGGTGATGGAGGAATTG
CCACCAAAGAAGTGAAAGTAGTTTTCAGGAAAAGGGATGGGGGGCTGACA
CGACAATGCGATGCTATTTAGCTTCTGTTTGGTGAAAACGTGCGTGACAA
AGAGAAAATAGAGGAGGTGTGTGAGTTAAGGAGTAATTGGGCAATCAAGA
GGACGAAAATGAGCAATGTAAGATGGTCATGCGCTTGCCCCCGACTGCGA
CCGAGGAGAAGAAACAAGCAAGTGTGCGCATTTTGAGACTGCAACAAGGA
CACCAGAAGCTTAACAATCGCCTATCGATTATTCAGTTGGCTTGGAAGGC
GG back to topprotein sequence of jgi.p|Nanoce1779_2|556348 >mRNA_5328-protein ID=mRNA_5328-protein|Name=jgi.p|Nanoce1779_2|556348|organism=Nannochloropsis oceanica|type=polypeptide|length=601bp
MFSGIFPKKPDTAGEKALAQALGGGGEDDDDSSSRSKKGGGKGTGLFDPS
GLERAAKAAKELDKSTNAREALKLIELQEVTKQREADSRRTEYEAHVKSL
EIQRAQKEGEEARKTLDSQTEHEKRRAEYRDQLERKRYVDQLNAEKYRKE
EELRKQEEYLAKQESIKRKTLEYEAELRQQTELARVKAETEGRIKQERQN
HDLRVAQARAEAKEYRETVLEGIRLASVQVGKGLQEFLADKERLTSAAVA
LSALALGIYTAKTSTGVAGRYIEARMGKPSLVRDTSRRTALQVLKNPVPT
LRRLLTSAKAEDALKGVILEQGLTERLTRVAISTANTKANGAPFRNLLLH
GPPGTGKTLFAKGLAANSGLDYAILTGGDVAPLGKEAVTEIHKVFDWAQT
TRKGVLLFVDEADAFLRRRSTEHMSEELRNALNAFLYRTGEASDKFMVVF
ASNQPEQFDWAINDRIDEMVDFDLPGEEERLQMVTMYLEKYVLNPPSAKA
RPITVMGVGEEEVKEAARLTVGFSGREISKLAIAWQAAAYGASGEAAVLD
KELFVRVLDQHLMAKRKKKGWLDAALSTLPGAGGKEGVGALVMEELPPKK
* back to topmRNA from alignment at scaffold_13:177876..180563- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5328 ID=mRNA_5328|Name=jgi.p|Nanoce1779_2|556348|organism=Nannochloropsis oceanica|type=mRNA|length=2688bp|location=Sequence derived from alignment at scaffold_13:177876..180563- (Nannochloropsis oceanica)
CGACAAACGCTGACGGTTGGAGGCATGGTGGGAGGCGGCGGCCCAGGACA
TTTCGCTTCGTCATACATGTTCTCACTCTAAAGCACAACTCCAAGCTCAC
CCAAGCAGATATCGGAAGACAAAATGACTGTGGCGACAGCGCCGTGATTG
GCAGATAAGCTGCCAACACAGGCGCCGGCGGCAAGGAAATGGACGGCCAG
CAGCAGTCCTGTTCCGCCGAGTATCTAACAAAAAAAGCACTGCATCGATG
ATGCCGCCTACTTACTAAACTAAATAATATACGCTTAATATCAACTCTTA
CGTGGACGTTTCGCTAAAAGGAAAGTAGGAAGAAGCACACATGCTGCGTT
CCTTAGGCTGCGCAATGCTCTTAGTTGCCTTGCTCCTCACTTATGCCCCA
TTTCCCCATATCCCGTCCAATCCATACCACGTCGACACTCTTACAACCAA
TACACAAGGGTCATGTTCAGTGGCATTTTCCCCAAGAAGCCGGACACGGC
GGGGGAGAAGGCCCTAGCACAGGCCTTGGGAGGGGGCGGGGAGGACGACG
ATGACAGCAGCAGCAGGAGCAAAAAGGGCGGCGGCAAGGGTACCGGCTTG
TTTGATCCGTCGGGACTGGAGCGGTGCGTTGATGAATGATTTGGCGTGAT
ACTTGTTTTCAAGCGGTGACGTCCAGTTGGCAACAGCTTTCCATAGATAC
AATCCGCTCACACAGCCCCTTCTTTTTCCTCCCTTCTCTCCCTTCCGCAC
TCCATACAGGGCCGCCAAAGCCGCGAAAGAACTCGATAAATCTACCAATG
CCCGAGAAGCGTTGAAGCTGATTGAGCTGCAAGAGGTGACGAAGCAACGC
GAGGCAGACTCCAGGCGGACCGAGTACGAGGCCCACGTCAAGAGCTTAGA
AATCCAACGCGCCCAAAAAGAAGGGGAAGAAGCCCGCAAGACCCTCGACT
CCCAAACGGAGCATGAGAAGCGTCGGGCAGAATATCGCGATCAGCTGGAG
CGCAAGCGGTATGTTGATCAGCTGAATGCAGAAAAGTACCGAAAAGAGGA
AGAGCTGCGGAAGCAGGAAGAGTACCTCGCCAAGCAAGAATCCATCAAAC
GCAAGACCCTAGAATATGAAGCTGAACTCCGGCAACAAACCGAATTGGCA
CGGGTCAAGGCCGAGACGGAGGGGAGGATCAAGCAAGAGAGACAGAACCA
TGATTTGAGGGTCGCTCAGGCACGGGCGGAAGCTAAGGAGTATAGGGAGA
CGGTGTTAGAGGGGATTAGACTTGCCAGCGTTCAAGTGGGGAAGGGGCTC
CAGGAGTTTTTAGCGGACAAAGAACGGCTGACATCAGCAGCAGTGGCCCT
CTCGGCGTTAGCGCTCGGGATTTACACGGCGAAGACCTCCACTGGGGTAG
CAGGACGGTATATCGAAGCTAGGATGGGTAAGCCCTCCTTGGTCCGCGAC
ACATCCCGACGGACTGCTCTACAGGTGCTGAAGAATCCCGTACCAACCCT
CCGTCGGCTCCTCACCTCGGCCAAAGCTGAGGACGCTCTAAAGGGGGTGA
TCCTCGAGCAGGGGTTAACGGAACGTTTGACGCGAGTGGCAATTTCCACG
GCCAATACCAAGGCGAACGGCGCACCTTTCCGAAACCTGCTTTTGCACGG
GCCACCCGGGACGGGGAAAACATTATTTGCCAAGGGTTTAGCGGCAAACA
GTGGGTTGGATTATGCGATTTTGACAGGGGGGGATGTGGCACCCTTGGGG
AAGGAGGCCGTGACGGAGATTCATAAGGTTTTCGACTGGGCGCAAACGAC
GAGGAAGGGCGTGCTGTTGTTTGTGGATGAGGCAGACGCTTTTCTCCGGA
GAAGGAGTACTGAGCACATGTCGGAGGAGTTAAGGAATGCGTTGAATGCC
TTCTTGTATCGAACGGGGGAGGCCAGCGATAAGTTTATGGTGGTGTTTGC
GAGCAACCAGCCCGAGCAGTTTGATTGGGCAATCAATGACCGCATTGACG
AAATGGTCGATTTTGATTTGCCCGGGGAAGAAGAACGCTTGCAAATGGTG
ACGATGTACTTGGAGAAATACGTGCTGAATCCTCCGTCGGCAAAGGCAAG
GCCGATTACAGTCATGGGAGTTGGGGAGGAGGAGGTGAAGGAGGCGGCGA
GGCTGACGGTGGGGTTCTCGGGGCGGGAGATATCCAAGCTGGCGATTGCG
TGGCAGGCGGCGGCTTATGGTGCGAGTGGGGAGGCAGCTGTTTTGGACAA
AGAATTGTTTGTGAGGGTGTTAGATCAGCACCTGATGGCGAAAAGGAAGA
AGAAGGGCTGGCTGGATGCGGCCTTGTCGACGTTGCCCGGCGCGGGAGGG
AAGGAAGGAGTTGGGGCGTTGGTGATGGAGGAATTGCCACCAAAGAAGTG
AAAGTAGTTTTCAGGAAAAGGGATGGGGGGCTGACACGACAATGCGATGC
TATTTAGCTTCTGTTTGGTGAAAACGTGCGTGACAAAGAGAAAATAGAGG
AGGTGTGTGAGTTAAGGAGTAATTGGGCAATCAAGAGGACGAAAATGAGC
AATGTAAGATGGTCATGCGCTTGCCCCCGACTGCGACCGAGGAGAAGAAA
CAAGCAAGTGTGCGCATTTTGAGACTGCAACAAGGACACCAGAAGCTTAA
CAATCGCCTATCGATTATTCAGTTGGCTTGGAAGGCGG back to topCoding sequence (CDS) from alignment at scaffold_13:177876..180563- >mRNA_5328 ID=mRNA_5328|Name=jgi.p|Nanoce1779_2|556348|organism=Nannochloropsis oceanica|type=CDS|length=3606bp|location=Sequence derived from alignment at scaffold_13:177876..180563- (Nannochloropsis oceanica)
GGCCGCCAAAGCCGCGAAAGAACTCGATAAATCTACCAATGCCCGAGAAG
CGTTGAAGCTGATTGAGCTGCAAGAGGTGACGAAGCAACGCGAGGCAGAC
TCCAGGCGGACCGAGTACGAGGCCCACGTCAAGAGCTTAGAAATCCAACG
CGCCCAAAAAGAAGGGGAAGAAGCCCGCAAGACCCTCGACTCCCAAACGG
AGCATGAGAAGCGTCGGGCAGAATATCGCGATCAGCTGGAGCGCAAGCGG
TATGTTGATCAGCTGAATGCAGAAAAGTACCGAAAAGAGGAAGAGCTGCG
GAAGCAGGAAGAGTACCTCGCCAAGCAAGAATCCATCAAACGCAAGACCC
TAGAATATGAAGCTGAACTCCGGCAACAAACCGAATTGGCACGGGTCAAG
GCCGAGACGGAGGGGAGGATCAAGCAAGAGAGACAGAACCATGATTTGAG
GGTCGCTCAGGCACGGGCGGAAGCTAAGGAGTATAGGGAGACGGTGTTAG
AGGGGATTAGACTTGCCAGCGTTCAAGTGGGGAAGGGGCTCCAGGAGTTT
TTAGCGGACAAAGAACGGCTGACATCAGCAGCAGTGGCCCTCTCGGCGTT
AGCGCTCGGGATTTACACGGCGAAGACCTCCACTGGGGTAGCAGGACGGT
ATATCGAAGCTAGGATGGGTAAGCCCTCCTTGGTCCGCGACACATCCCGA
CGGACTGCTCTACAGGTGCTGAAGAATCCCGTACCAACCCTCCGTCGGCT
CCTCACCTCGGCCAAAGCTGAGGACGCTCTAAAGGGGGTGATCCTCGAGC
AGGGGTTAACGGAACGTTTGACGCGAGTGGCAATTTCCACGGCCAATACC
AAGGCGAACGGCGCACCTTTCCGAAACCTGCTTTTGCACGGGCCACCCGG
GACGGGGAAAACATTATTTGCCAAGGGTTTAGCGGCAAACAGTGGGTTGG
ATTATGCGATTTTGACAGGGGGGGATGTGGCACCCTTGGGGAAGGAGGCC
GTGACGGAGATTCATAAGGTTTTCGACTGGGCGCAAACGACGAGGAAGGG
CGTGCTGTTGTTTGTGGATGAGGCAGACGCTTTTCTCCGGAGAAGGAGTA
CTGAGCACATGTCGGAGGAGTTAAGGAATGCGTTGAATGCCTTCTTGTAT
CGAACGGGGGAGGCCAGCGATAAGTTTATGGTGGTGTTTGCGAGCAACCA
GCCCGAGCAGTTTGATTGGGCAATCAATGACCGCATTGACGAAATGGTCG
ATTTTGATTTGCCCGGGGAAGAAGAACGCTTGCAAATGGTGACGATGTAC
TTGGAGAAATACGTGCTGAATCCTCCGTCGGCAAAGGCAAGGCCGATTAC
AGTCATGGGAGTTGGGGAGGAGGAGGTGAAGGAGGCGGCGAGGCTGACGG
TGGGGTTCTCGGGGCGGGAGATATCCAAGCTGGCGATTGCGTGGCAGGCG
GCGGCTTATGGTGCGAGTGGGGAGGCAGCTGTTTTGGACAAAGAATTGTT
TGTGAGGGTGTTAGATCAGCACCTGATGGCGAAAAGGAAGAAGAAGGGCT
GGCTGGATGCGGCCTTGTCGACGTTGCCCGGCGCGGGAGGGAAGGAAGGA
GTTGGGGCGTTGGTGATGGAGGAATTGCCACCAAAGAAGTGAATGTTCAG
TGGCATTTTCCCCAAGAAGCCGGACACGGCGGGGGAGAAGGCCCTAGCAC
AGGCCTTGGGAGGGGGCGGGGAGGACGACGATGACAGCAGCAGCAGGAGC
AAAAAGGGCGGCGGCAAGGGTACCGGCTTGTTTGATCCGTCGGGACTGGA
GCGGGCCGCCAAAGCCGCGAAAGAACTCGATAAATCTACCAATGCCCGAG
AAGCGTTGAAGCTGATTGAGCTGCAAGAGGTGACGAAGCAACGCGAGGCA
GACTCCAGGCGGACCGAGTACGAGGCCCACGTCAAGAGCTTAGAAATCCA
ACGCGCCCAAAAAGAAGGGGAAGAAGCCCGCAAGACCCTCGACTCCCAAA
CGGAGCATGAGAAGCGTCGGGCAGAATATCGCGATCAGCTGGAGCGCAAG
CGGTATGTTGATCAGCTGAATGCAGAAAAGTACCGAAAAGAGGAAGAGCT
GCGGAAGCAGGAAGAGTACCTCGCCAAGCAAGAATCCATCAAACGCAAGA
CCCTAGAATATGAAGCTGAACTCCGGCAACAAACCGAATTGGCACGGGTC
AAGGCCGAGACGGAGGGGAGGATCAAGCAAGAGAGACAGAACCATGATTT
GAGGGTCGCTCAGGCACGGGCGGAAGCTAAGGAGTATAGGGAGACGGTGT
TAGAGGGGATTAGACTTGCCAGCGTTCAAGTGGGGAAGGGGCTCCAGGAG
TTTTTAGCGGACAAAGAACGGCTGACATCAGCAGCAGTGGCCCTCTCGGC
GTTAGCGCTCGGGATTTACACGGCGAAGACCTCCACTGGGGTAGCAGGAC
GGTATATCGAAGCTAGGATGGGTAAGCCCTCCTTGGTCCGCGACACATCC
CGACGGACTGCTCTACAGGTGCTGAAGAATCCCGTACCAACCCTCCGTCG
GCTCCTCACCTCGGCCAAAGCTGAGGACGCTCTAAAGGGGGTGATCCTCG
AGCAGGGGTTAACGGAACGTTTGACGCGAGTGGCAATTTCCACGGCCAAT
ACCAAGGCGAACGGCGCACCTTTCCGAAACCTGCTTTTGCACGGGCCACC
CGGGACGGGGAAAACATTATTTGCCAAGGGTTTAGCGGCAAACAGTGGGT
TGGATTATGCGATTTTGACAGGGGGGGATGTGGCACCCTTGGGGAAGGAG
GCCGTGACGGAGATTCATAAGGTTTTCGACTGGGCGCAAACGACGAGGAA
GGGCGTGCTGTTGTTTGTGGATGAGGCAGACGCTTTTCTCCGGAGAAGGA
GTACTGAGCACATGTCGGAGGAGTTAAGGAATGCGTTGAATGCCTTCTTG
TATCGAACGGGGGAGGCCAGCGATAAGTTTATGGTGGTGTTTGCGAGCAA
CCAGCCCGAGCAGTTTGATTGGGCAATCAATGACCGCATTGACGAAATGG
TCGATTTTGATTTGCCCGGGGAAGAAGAACGCTTGCAAATGGTGACGATG
TACTTGGAGAAATACGTGCTGAATCCTCCGTCGGCAAAGGCAAGGCCGAT
TACAGTCATGGGAGTTGGGGAGGAGGAGGTGAAGGAGGCGGCGAGGCTGA
CGGTGGGGTTCTCGGGGCGGGAGATATCCAAGCTGGCGATTGCGTGGCAG
GCGGCGGCTTATGGTGCGAGTGGGGAGGCAGCTGTTTTGGACAAAGAATT
GTTTGTGAGGGTGTTAGATCAGCACCTGATGGCGAAAAGGAAGAAGAAGG
GCTGGCTGGATGCGGCCTTGTCGACGTTGCCCGGCGCGGGAGGGAAGGAA
GGAGTTGGGGCGTTGGTGATGGAGGAATTGCCACCAAAGAAGTGAATGTT
CAGTGGCATTTTCCCCAAGAAGCCGGACACGGCGGGGGAGAAGGCCCTAG
CACAGGCCTTGGGAGGGGGCGGGGAGGACGACGATGACAGCAGCAGCAGG
AGCAAAAAGGGCGGCGGCAAGGGTACCGGCTTGTTTGATCCGTCGGGACT
GGAGCG back to top
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