jgi.p|Nanoce1779_2|592151, mRNA_5327 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592151
Unique Name	mRNA_5327
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1106
Alignment location	scaffold_13:176164..177887 +

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Properties


Property Name	Value
TranscriptId	592237
Track	FilteredModels2
ProteinId	592151

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:176164..177887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592151	gene_5327	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592151	mRNA_5327-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5327	CDS_5327	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:176164..177887+
coding sequence from alignment at scaffold_13:176164..177887+

mRNA sequence

>mRNA_5327 ID=mRNA_5327|Name=jgi.p|Nanoce1779_2|592151|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp
ACAGCACCAACACAAGCTCATCTACAACACAAGCAGCATGGCAGAATCCA
GCTTTGAGCAAACGGCCGCACCACCGTGCTCTATTTCTCAACAATACTCG
TTCATGAGCAACCTGCTGGCAGGGGGTGCGGCGGGGACGGCCGTGGACGT
TTCCCTCTTCCCGCTTGACACCATCAAGACGCGGTTACAAGCGTCGGAAG
GATTTTGGAAAGCTGGTGGCTTCCGCGGAGTCTACAAAGGCTTAGGCGCT
GCCGCCGCCGGCTCCGCGCCGGGGGCCTCTCTTTTCTTCTCAATCTACGA
GTCACTTAAACAAAAAGCAGAGCCATATGTAGCCAAGGAGTATGCGCCCT
TAGTGCACATGGCAGCGGCGTCGTTCGGAGAGACAGGGGCATGCTTAGTG
AGGGTGCCAACGGAAAACGTAAAGCAGAACTTACAGGCGGGGCGATACGC
GACTCAGGGAGAGGCCATGAGGATGATTATGGCGAAGGAGGGGTTGATGG
GTTTTTACAGAGGCTTCTTGTCCACAGTCTTTCGGGAGGTTCCCTTCTCT
TTCATCCAGTTCCCCATCTATGAAGCAGCCAAAGCCGCCTGGTCCCACGA
ACAAGGGACGCCCATCTCCCCCTTCCAAGCAGCAGCGTGTGGGAGTTTCG
CCGGGGCTATCGCGGCAGCTATGACCACTCCACTGGACGTGATTAAAACG
AGGTTAATTTTGGAAAAAGACGTGCATGGTAGGAAGTACACAGGGATCGT
GGATGTGTTCAGGAGGGTAGTGAAGGAGGAAGGAGGGAAGACTTTGTTCA
GCGGGTTGGCACCGCGAGTAATGTGGATTACGATTGGCGGGTTTGTGTAC
TTCGGGGCGTATGAGGAGGTGAGGCGCTTGCTGTCGCCGGTATTCCCGCT
CTCGACGATCTAGAGTTAGAGATGATGGTTGTTAGGAAGGAAGGTGGTTG
TTAGGGAGGAATGAGAAGGTACGAGTGGCCGTTGTATGTACATAGAGATA
GGGAGTCTTCCGCATTGGAAGACATCGATCGATCGATAAATGTAAACTAA
ATATACGTCCGTCATCTTTAAATAAAGCCCAACGAAAAACAGTACCGCCT
TCCAAG

protein sequence of jgi.p|Nanoce1779_2|592151

>mRNA_5327-protein ID=mRNA_5327-protein|Name=jgi.p|Nanoce1779_2|592151|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MAESSFEQTAAPPCSISQQYSFMSNLLAGGAAGTAVDVSLFPLDTIKTRL
QASEGFWKAGGFRGVYKGLGAAAAGSAPGASLFFSIYESLKQKAEPYVAK
EYAPLVHMAAASFGETGACLVRVPTENVKQNLQAGRYATQGEAMRMIMAK
EGLMGFYRGFLSTVFREVPFSFIQFPIYEAAKAAWSHEQGTPISPFQAAA
CGSFAGAIAAAMTTPLDVIKTRLILEKDVHGRKYTGIVDVFRRVVKEEGG
KTLFSGLAPRVMWITIGGFVYFGAYEEVRRLLSPVFPLSTI*

mRNA from alignment at scaffold_13:176164..177887+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5327 ID=mRNA_5327|Name=jgi.p|Nanoce1779_2|592151|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp|location=Sequence derived from alignment at scaffold_13:176164..177887+ (Nannochloropsis oceanica)
ACAGCACCAACACAAGCTCATCTACAACACAAGCAGCATGGCAGAATCCA
GCTTTGAGCAAACGGCCGCACCACCGTGCTCTATTTCTCAACAATACTCG
TTCATGAGCAACCTGCTGGTAAGTCCGCACGTGTAGAGAAAGTGGGCGGG
TTTGGATTGAGGGAGGGGGGGATACTACCCGTACGCCTCGCGGAGATCGA
TCTTGTGAACCGGCGCAGCCTCCCTAGCCACAGCTACGCACGCTTATGTG
CCTCTTAGCATATGCTGTCAGTTTTTTTTTTAGAGTAGGCTAATGGAAGA
GTCATCCCATGACTCACATGTAGCTCCCCTTTCCTCCCTGAACCTCCCGC
GCTACCCGCGCTACTTATGTAGGCAGGGGGTGCGGCGGGGACGGCCGTGG
ACGTTTCCCTCTTCCCGCTTGACACCATCAAGACGCGGTAAGCTTGCTTA
GAACACAAACAGATGTCTCGATCATAAGAGAGGAGGTCGCTCTTCTGTTA
TTTGGAAGGAGGATTAACTAACTCATTTATTCCCTCGTCCGCCCCCCCCC
TCAACTCACCCACCACTTCGCTACAGGTTACAAGCGTCGGAAGGATTTTG
GAAAGCTGGTGGCTTCCGCGGAGTCTACAAAGGCTTAGGCGCTGCCGCCG
CCGGCTCCGCGCCGGGGGCCTCTCTTTTCTTCTCAATCTACGAGTCACTT
AAACAAAAAGCAGAGCCATATGTAGCCAAGGAGTATGCGCCCTTAGTGCA
CATGGCAGCGGCGTCGTTCGGAGAGACAGGGGCATGCTTAGTGAGGGTGC
CAACGGAAAACGTAAAGCAGAACTTACAGGCGGGGCGATACGCGACTCAG
GGAGAGGCCATGAGGATGATTATGGCGAAGGAGGGGTTGATGGGTTTTTA
CAGAGGCTTCTTGTCCACAGTCTTTCGGGAGGTAAGGAGGGAGGAAGAGA
GGTAGGGGAGAGAAAGATAGGGCGTGAGGCAGAATTTGCAGAGAGGTAGA
GTCCAGACTCAGTCGCAGGGAAGAAGGGAGGGAAAGCGGAAGGGAGGGAT
TATGCGTGGGGTATGTCCGATTCACTACTTGTTTTTCTTTTCACTAGTAA
GTGATCATGACGACCTCAAAGTCACCTGTACCTTTGCCCCCTCCCTTCCT
CGGAAGGTTCCCTTCTCTTTCATCCAGTTCCCCATCTATGAAGCAGCCAA
AGCCGCCTGGTCCCACGAACAAGGGACGCCCATCTCCCCCTTCCAAGCAG
CAGCGTGTGGGAGTTTCGCCGGGGCTATCGCGGCAGCTATGACCACTCCA
CTGGACGTGATTAAAACGAGGTTAATTTTGGAAAAAGACGTGCATGGTAG
GAAGTACACAGGGATCGTGGATGTGTTCAGGAGGGTAGTGAAGGAGGAAG
GAGGGAAGACTTTGTTCAGCGGGTTGGCACCGCGAGTAATGTGGATTACG
ATTGGCGGGTTTGTGTACTTCGGGGCGTATGAGGAGGTGAGGCGCTTGCT
GTCGCCGGTATTCCCGCTCTCGACGATCTAGAGTTAGAGATGATGGTTGT
TAGGAAGGAAGGTGGTTGTTAGGGAGGAATGAGAAGGTACGAGTGGCCGT
TGTATGTACATAGAGATAGGGAGTCTTCCGCATTGGAAGACATCGATCGA
TCGATAAATGTAAACTAAATATACGTCCGTCATCTTTAAATAAAGCCCAA
CGAAAAACAGTACCGCCTTCCAAG

Coding sequence (CDS) from alignment at scaffold_13:176164..177887+

>mRNA_5327 ID=mRNA_5327|Name=jgi.p|Nanoce1779_2|592151|organism=Nannochloropsis oceanica|type=CDS|length=3504bp|location=Sequence derived from alignment at scaffold_13:176164..177887+ (Nannochloropsis oceanica)
ATGGCAGAATCCAGCTTTGAGCAAACGGCCGCACCACCGTGCTCTATTTC
TCAACAATACTCGTTCATGAGCAACCTGCTGGCAGGGGGTGCGGCGGGGA
CGGCCGTGGACGTTTCCCTCTTCCCGCTTGACACCATCAAGACGCGGTTA
CAAGCGTCGGAAGGATTTTGGAAAGCTGGTGGCTTCCGCGGAGTCTACAA
AGGCTTAGGCGCTGCCGCCGCCGGCTCCGCGCCGGGGGCCTCTCTTTTCT
TCTCAATCTACGAGTCACTTAAACAAAAAGCAGAGCCATATGTAGCCAAG
GAGTATGCGCCCTTAGTGCACATGGCAGCGGCGTCGTTCGGAGAGACAGG
GGCATGCTTAGTGAGGGTGCCAACGGAAAACGTAAAGCAGAACTTACAGG
CGGGGCGATACGCGACTCAGGGAGAGGCCATGAGGATGATTATGGCGAAG
GAGGGGTTGATGGGTTTTTACAGAGGCTTCTTGTCCACAGTCTTTCGGGA
GGTTCCCTTCTCTTTCATCCAGTTCCCCATCTATGAAGCAGCCAAAGCCG
CCTGGTCCCACGAACAAGGGACGCCCATCTCCCCCTTCCAAGCAGCAGCG
TGTGGGAGTTTCGCCGGGGCTATCGCGGCAGCTATGACCACTCCACTGGA
CGTGATTAAAACGAGGTTAATTTTGGAAAAAGACGTGCATGGTAGGAAGT
ACACAGGGATCGTGGATGTGTTCAGGAGGGTAGTGAAGGAGGAAGGAGGG
AAGACTTTGTTCAGCGGGTTGGCACCGCGAGTAATGTGGATTACGATTGG
CGGGTTTGTGTACTTCGGGGCGTATGAGGAGGTGAGGCGCTTGCTGTCGC
CGGTATTCCCGCTCTCGACGATCTAGATGGCAGAATCCAGCTTTGAGCAA
ACGGCCGCACCACCGTGCTCTATTTCTCAACAATACTCGTTCATGAGCAA
CCTGCTGGCAGGGGGTGCGGCGGGGACGGCCGTGGACGTTTCCCTCTTCC
CGCTTGACACCATCAAGACGCGGTTACAAGCGTCGGAAGGATTTTGGAAA
GCTGGTGGCTTCCGCGGAGTCTACAAAGGCTTAGGCGCTGCCGCCGCCGG
CTCCGCGCCGGGGGCCTCTCTTTTCTTCTCAATCTACGAGTCACTTAAAC
AAAAAGCAGAGCCATATGTAGCCAAGGAGTATGCGCCCTTAGTGCACATG
GCAGCGGCGTCGTTCGGAGAGACAGGGGCATGCTTAGTGAGGGTGCCAAC
GGAAAACGTAAAGCAGAACTTACAGGCGGGGCGATACGCGACTCAGGGAG
AGGCCATGAGGATGATTATGGCGAAGGAGGGGTTGATGGGTTTTTACAGA
GGCTTCTTGTCCACAGTCTTTCGGGAGGTTCCCTTCTCTTTCATCCAGTT
CCCCATCTATGAAGCAGCCAAAGCCGCCTGGTCCCACGAACAAGGGACGC
CCATCTCCCCCTTCCAAGCAGCAGCGTGTGGGAGTTTCGCCGGGGCTATC
GCGGCAGCTATGACCACTCCACTGGACGTGATTAAAACGAGGTTAATTTT
GGAAAAAGACGTGCATGGTAGGAAGTACACAGGGATCGTGGATGTGTTCA
GGAGGGTAGTGAAGGAGGAAGGAGGGAAGACTTTGTTCAGCGGGTTGGCA
CCGCGAGTAATGTGGATTACGATTGGCGGGTTTGTGTACTTCGGGGCGTA
TGAGGAGGTGAGGCGCTTGCTGTCGCCGGTATTCCCGCTCTCGACGATCT
AGATGGCAGAATCCAGCTTTGAGCAAACGGCCGCACCACCGTGCTCTATT
TCTCAACAATACTCGTTCATGAGCAACCTGCTGGCAGGGGGTGCGGCGGG
GACGGCCGTGGACGTTTCCCTCTTCCCGCTTGACACCATCAAGACGCGGT
TACAAGCGTCGGAAGGATTTTGGAAAGCTGGTGGCTTCCGCGGAGTCTAC
AAAGGCTTAGGCGCTGCCGCCGCCGGCTCCGCGCCGGGGGCCTCTCTTTT
CTTCTCAATCTACGAGTCACTTAAACAAAAAGCAGAGCCATATGTAGCCA
AGGAGTATGCGCCCTTAGTGCACATGGCAGCGGCGTCGTTCGGAGAGACA
GGGGCATGCTTAGTGAGGGTGCCAACGGAAAACGTAAAGCAGAACTTACA
GGCGGGGCGATACGCGACTCAGGGAGAGGCCATGAGGATGATTATGGCGA
AGGAGGGGTTGATGGGTTTTTACAGAGGCTTCTTGTCCACAGTCTTTCGG
GAGGTTCCCTTCTCTTTCATCCAGTTCCCCATCTATGAAGCAGCCAAAGC
CGCCTGGTCCCACGAACAAGGGACGCCCATCTCCCCCTTCCAAGCAGCAG
CGTGTGGGAGTTTCGCCGGGGCTATCGCGGCAGCTATGACCACTCCACTG
GACGTGATTAAAACGAGGTTAATTTTGGAAAAAGACGTGCATGGTAGGAA
GTACACAGGGATCGTGGATGTGTTCAGGAGGGTAGTGAAGGAGGAAGGAG
GGAAGACTTTGTTCAGCGGGTTGGCACCGCGAGTAATGTGGATTACGATT
GGCGGGTTTGTGTACTTCGGGGCGTATGAGGAGGTGAGGCGCTTGCTGTC
GCCGGTATTCCCGCTCTCGACGATCTAGATGGCAGAATCCAGCTTTGAGC
AAACGGCCGCACCACCGTGCTCTATTTCTCAACAATACTCGTTCATGAGC
AACCTGCTGGCAGGGGGTGCGGCGGGGACGGCCGTGGACGTTTCCCTCTT
CCCGCTTGACACCATCAAGACGCGGTTACAAGCGTCGGAAGGATTTTGGA
AAGCTGGTGGCTTCCGCGGAGTCTACAAAGGCTTAGGCGCTGCCGCCGCC
GGCTCCGCGCCGGGGGCCTCTCTTTTCTTCTCAATCTACGAGTCACTTAA
ACAAAAAGCAGAGCCATATGTAGCCAAGGAGTATGCGCCCTTAGTGCACA
TGGCAGCGGCGTCGTTCGGAGAGACAGGGGCATGCTTAGTGAGGGTGCCA
ACGGAAAACGTAAAGCAGAACTTACAGGCGGGGCGATACGCGACTCAGGG
AGAGGCCATGAGGATGATTATGGCGAAGGAGGGGTTGATGGGTTTTTACA
GAGGCTTCTTGTCCACAGTCTTTCGGGAGGTTCCCTTCTCTTTCATCCAG
TTCCCCATCTATGAAGCAGCCAAAGCCGCCTGGTCCCACGAACAAGGGAC
GCCCATCTCCCCCTTCCAAGCAGCAGCGTGTGGGAGTTTCGCCGGGGCTA
TCGCGGCAGCTATGACCACTCCACTGGACGTGATTAAAACGAGGTTAATT
TTGGAAAAAGACGTGCATGGTAGGAAGTACACAGGGATCGTGGATGTGTT
CAGGAGGGTAGTGAAGGAGGAAGGAGGGAAGACTTTGTTCAGCGGGTTGG
CACCGCGAGTAATGTGGATTACGATTGGCGGGTTTGTGTACTTCGGGGCG
TATGAGGAGGTGAGGCGCTTGCTGTCGCCGGTATTCCCGCTCTCGACGAT
CTAG

Synonyms

Publications