jgi.p|Nanoce1779_2|63644, mRNA_5326 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|63644
Unique NamemRNA_5326
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1239
Alignment locationscaffold_13:174441..175915 -

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Properties
Property NameValue
TranscriptId63730
TrackFilteredModels2
ProteinId63644
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:174441..175915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|63644gene_5326Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|63644mRNA_5326-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5326CDS_5326Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5326 ID=mRNA_5326|Name=jgi.p|Nanoce1779_2|63644|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
GTAACGGCGGGTTGCCATGGCCTTCTTGTCTCTCAGTGATGACGGCTTGG
CCTGGTCCTTGTCCTGATCGGTTGCCGGTACGAGGCCACCCTATCCTATG
CCTACGAATGCCAAGTGTATCGTTATCCACTCCCTAGCTAGGGGTACTTT
GTCACGCGGCGCTTTGATCTTCCTTCTCCCCAATCCTCTCCCCCACTTCA
CTCGATCCGCTAACGCACATCTCATTCTAAATCAGAGCAACCAAAAGCGA
CGAAAAATACACCAACATAAGCCCATGGACAAGATTCTGGCTATGTTATA
CGCTTGGGTAGATGTGCATGAGTGTTCAGCCCGCTGCACTTACCCTTGTT
TTGCCCTTTCCATTATTACCTTGCCCTCCCAACCGACACAGGTGGTCGTT
CCACGAGACGAGCGAGAACACACACGCGTCTGCCCCTGGTTCTTTGTGCC
CCGTTTTATACTCGACACCTACATCCTTAGCAGTCACACAACTATGTACG
CGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTCGGCACAG
CAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAGAAGGCGC
TGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTGGCCTCCG
GGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAGCGGAAAT
ACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGTCCAAGCC
CACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCGAGCTCCA
TCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGCGGCACCG
GTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACTTGGAGGA
GGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTGATTCAAG
AGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGATGCCGCGA
GAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCACACAGGA
CTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGGTACCCCGCCCTC
GGGCCGGACGTGGACGACATTGACGCCGTGGACGCCGATAATCCCCTTGC
ATGCGTGGAGTACGCGGAGAACCAATACACCCACTACCGGGAAAAGGAAT
GTCGGCCTGGGTACGACCCGGCCTACATGGCCAAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|63644

>mRNA_5326-protein ID=mRNA_5326-protein|Name=jgi.p|Nanoce1779_2|63644|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MPTNAKCIVIHSLARGTLSRGALIFLLPNPLPHFTRSANAHLILNQSNQK
RRKIHQHKPMDKILAMLYAWVDVHECSARCTYPCFALSIITLPSQPTQVV
VPRDEREHTRVCPWFFVPRFILDTYILSSHTTMYAARSDSATFGGKHVSA
QQQEVPSMGDGPQQPEGADPVQKPGVSTRSGLASGASRRALGDITNNRSG
NTGAGGKQGQQQQNVSKPTTRAALAAAVAAGSSSITGSSSSSLGGLASAA
PVPVLHQQSAAALPHLEEESRRRQQEVEDMDLIQEVDEIDMHIEEDNEMP
REGEGSEPLEALGAITQDLQGMTLKYSAVRVPRPRAGRGRH*
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mRNA from alignment at scaffold_13:174441..175915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5326 ID=mRNA_5326|Name=jgi.p|Nanoce1779_2|63644|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp|location=Sequence derived from alignment at scaffold_13:174441..175915- (Nannochloropsis oceanica)
GTAACGGCGGGTTGCCATGGCCTTCTTGTCTCTCAGTGATGACGGCTTGG
CCTGGTCCTTGTCCTGATCGGTTGCCGGTACGAGGCCACCCTATCCTATG
CCTACGAATGCCAAGTGTATCGTTATCCACTCCCTAGCTAGGGGTACTTT
GTCACGCGGCGCTTTGATCTTCCTTCTCCCCAATCCTCTCCCCCACTTCA
CTCGATCCGCTAACGCACATCTCATTCTAAATCAGAGCAACCAAAAGCGA
CGAAAAATACACCAACATAAGCCCATGGACAAGATTCTGGCTATGTTATA
CGCTTGGGTAGATGTGCATGAGTGTTCAGCCCGCTGCACTTACCCTTGTT
TTGCCCTTTCCATTATTACCTTGCCCTCCCAACCGACACAGGTGGTCGTT
CCACGAGACGAGCGAGAACACACACGCGTCTGCCCCTGGTTCTTTGTGCC
CCGTTTTATACTCGACACCTACATCCTTAGCAGTCACACAACTATGTACG
CGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTCGGCACAG
CAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAGAAGGCGC
TGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTGGCCTCCG
GGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAGCGGAAAT
ACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGTCCAAGCC
CACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCGAGCTCCA
TCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGCGGCACCG
GTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACTTGGAGGA
GGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTGATTCAAG
AGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGATGGTACGT
AATAATGAAGAGATTGGAGAAGAAGGAGAGGGAGAATGAAGACTTTTGTA
GATCAACTTTTCTTTTCTACTTCTAATTAATAATTTATACAGCCGCGAGA
AGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCACACAGGACT
TGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGGTACGTATTTAAACT
TGTCTTTCTCTTTGAGACTACTTTCTCCACTCTTTCATTACTTGGATGTA
ATCTCAACGCGTTGTCTTTTTAACAACTACTTGTTGCTGTACTTCCCCCT
CCTCCCTTCCTCCCCTCTTATCTACAGCCCGCCCTCGGGCCGGACGTGGA
CGACATTGACGCCGTGGACGCCGATAATCCCCTTGCATGCGTGGAGTACG
CGGAGAACCAATACACCCACTACCGGGAAAAGGAATGTCGGCCTGGGTAC
GACCCGGCCTACATGGCCAAGCAGC
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Coding sequence (CDS) from alignment at scaffold_13:174441..175915-

>mRNA_5326 ID=mRNA_5326|Name=jgi.p|Nanoce1779_2|63644|organism=Nannochloropsis oceanica|type=CDS|length=3078bp|location=Sequence derived from alignment at scaffold_13:174441..175915- (Nannochloropsis oceanica)
CCCGCCCTCGGGCCGGACGTGGACGACATTGACCGCGAGAAGGAGAGGGA
AGCGAGCCGCTTGAGGCGTTGGGCGCCATCACACAGGACTTGCAGGGCAT
GACCTTAAAGTATTCTGCAGTCCGGGTACATGCCTACGAATGCCAAGTGT
ATCGTTATCCACTCCCTAGCTAGGGGTACTTTGTCACGCGGCGCTTTGAT
CTTCCTTCTCCCCAATCCTCTCCCCCACTTCACTCGATCCGCTAACGCAC
ATCTCATTCTAAATCAGAGCAACCAAAAGCGACGAAAAATACACCAACAT
AAGCCCATGGACAAGATTCTGGCTATGTTATACGCTTGGGTAGATGTGCA
TGAGTGTTCAGCCCGCTGCACTTACCCTTGTTTTGCCCTTTCCATTATTA
CCTTGCCCTCCCAACCGACACAGGTGGTCGTTCCACGAGACGAGCGAGAA
CACACACGCGTCTGCCCCTGGTTCTTTGTGCCCCGTTTTATACTCGACAC
CTACATCCTTAGCAGTCACACAACTATGTACGCGGCACGCAGCGACTCCG
CCACATTTGGTGGTAAGCACGTGTCGGCACAGCAGCAGGAGGTACCGTCC
ATGGGAGACGGGCCTCAACAACCAGAAGGCGCTGATCCGGTCCAAAAGCC
TGGAGTTTCTACCCGCAGCGGCCTGGCCTCCGGGGCTTCCCGCCGTGCTC
TGGGAGACATTACCAACAACAGGAGCGGAAATACCGGAGCAGGGGGTAAG
CAAGGGCAGCAACAGCAGAATGTGTCCAAGCCCACCACACGGGCCGCTTT
GGCCGCTGCCGTCGCGGCTGGCTCGAGCTCCATCACCGGCAGCAGCAGCT
CCAGTCTGGGTGGCTTGGCTTCGGCGGCACCGGTGCCCGTCTTGCACCAG
CAATCCGCCGCGGCGTTGCCACACTTGGAGGAGGAGAGCAGGCGGCGACA
GCAGGAGGTGGAAGACATGGACTTGATTCAAGAGGTGGACGAGATTGACA
TGCACATTGAGGAGGACAATGAGATGCCCGCCCTCGGGCCGGACGTGGAC
GACATTGACCGCGAGAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGC
GCCATCACACAGGACTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCG
GGTACATGCCTACGAATGCCAAGTGTATCGTTATCCACTCCCTAGCTAGG
GGTACTTTGTCACGCGGCGCTTTGATCTTCCTTCTCCCCAATCCTCTCCC
CCACTTCACTCGATCCGCTAACGCACATCTCATTCTAAATCAGAGCAACC
AAAAGCGACGAAAAATACACCAACATAAGCCCATGGACAAGATTCTGGCT
ATGTTATACGCTTGGGTAGATGTGCATGAGTGTTCAGCCCGCTGCACTTA
CCCTTGTTTTGCCCTTTCCATTATTACCTTGCCCTCCCAACCGACACAGG
TGGTCGTTCCACGAGACGAGCGAGAACACACACGCGTCTGCCCCTGGTTC
TTTGTGCCCCGTTTTATACTCGACACCTACATCCTTAGCAGTCACACAAC
TATGTACGCGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGT
CGGCACAGCAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCA
GAAGGCGCTGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCT
GGCCTCCGGGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGA
GCGGAAATACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTG
TCCAAGCCCACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTC
GAGCTCCATCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGG
CGGCACCGGTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACAC
TTGGAGGAGGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTT
GATTCAAGAGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGA
TGCCCGCCCTCGGGCCGGACGTGGACGACATTGACCGCGAGAAGGAGAGG
GAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCACACAGGACTTGCAGGGC
ATGACCTTAAAGTATTCTGCAGTCCGGGTACATGCCTACGAATGCCAAGT
GTATCGTTATCCACTCCCTAGCTAGGGGTACTTTGTCACGCGGCGCTTTG
ATCTTCCTTCTCCCCAATCCTCTCCCCCACTTCACTCGATCCGCTAACGC
ACATCTCATTCTAAATCAGAGCAACCAAAAGCGACGAAAAATACACCAAC
ATAAGCCCATGGACAAGATTCTGGCTATGTTATACGCTTGGGTAGATGTG
CATGAGTGTTCAGCCCGCTGCACTTACCCTTGTTTTGCCCTTTCCATTAT
TACCTTGCCCTCCCAACCGACACAGGTGGTCGTTCCACGAGACGAGCGAG
AACACACACGCGTCTGCCCCTGGTTCTTTGTGCCCCGTTTTATACTCGAC
ACCTACATCCTTAGCAGTCACACAACTATGTACGCGGCACGCAGCGACTC
CGCCACATTTGGTGGTAAGCACGTGTCGGCACAGCAGCAGGAGGTACCGT
CCATGGGAGACGGGCCTCAACAACCAGAAGGCGCTGATCCGGTCCAAAAG
CCTGGAGTTTCTACCCGCAGCGGCCTGGCCTCCGGGGCTTCCCGCCGTGC
TCTGGGAGACATTACCAACAACAGGAGCGGAAATACCGGAGCAGGGGGTA
AGCAAGGGCAGCAACAGCAGAATGTGTCCAAGCCCACCACACGGGCCGCT
TTGGCCGCTGCCGTCGCGGCTGGCTCGAGCTCCATCACCGGCAGCAGCAG
CTCCAGTCTGGGTGGCTTGGCTTCGGCGGCACCGGTGCCCGTCTTGCACC
AGCAATCCGCCGCGGCGTTGCCACACTTGGAGGAGGAGAGCAGGCGGCGA
CAGCAGGAGGTGGAAGACATGGACTTGATTCAAGAGGTGGACGAGATTGA
CATGCACATTGAGGAGGACAATGAGATG
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Synonyms
Publications