jgi.p|Nanoce1779_2|592149, mRNA_5325 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592149
Unique NamemRNA_5325
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2119
Alignment locationscaffold_13:173699..175915 -

Link to JBrowse

Properties
Property NameValue
TranscriptId592235
TrackFilteredModels2
ProteinId592149
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:173699..175915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592149gene_5325Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592149mRNA_5325-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5325CDS_5325Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5325 ID=mRNA_5325|Name=jgi.p|Nanoce1779_2|592149|organism=Nannochloropsis oceanica|type=mRNA|length=2119bp
GTAACGGCGGGTTGCCATGGCCTTCTTGTCTCTCAGTGATGACGGCTTGG
CCTGGTCCTTGTCCTGATCGGTTGCCGGTACGAGGCCACCCTATCCTATG
CCTACGAATGCCAAGTGTATCGTTATCCACTCCCTAGCTAGGGGTACTTT
GTCACGCGGCGCTTTGATCTTCCTTCTCCCCAATCCTCTCCCCCACTTCA
CTCGATCCGCTAACGCACATCTCATTCTAAATCAGAGCAACCAAAAGCGA
CGAAAAATACACCAACATAAGCCCATGGACAAGATTCTGGCTATGTTATA
CGCTTGGGTAGATGTGCATGAGTGTTCAGCCCGCTGCACTTACCCTTGTT
TTGCCCTTTCCATTATTACCTTGCCCTCCCAACCGACACAGGTGGTCGTT
CCACGAGACGAGCGAGAACACACACGCGTCTGCCCCTGGTTCTTTGTGCC
CCGTTTTATACTCGACACCTACATCCTTAGCAGTCACACAACTATGTACG
CGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTCGGCACAG
CAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAGAAGGCGC
TGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTGGCCTCCG
GGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAGCGGAAAT
ACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGTCCAAGCC
CACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCGAGCTCCA
TCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGCGGCACCG
GTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACTTGGAGGA
GGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTGATTCAAG
AGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGATGCCGCGA
GAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCACACAGGA
CTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGGTACGTATTTAAA
CTTGTCTTTCTCTTTGAGACTACTTTCTCCACTCTTTCATTACTTGGATG
TAATCTCAACGCGTTGTCTTTTTAACAACTACTTGTTGCTGTACTTCCCC
CTCCTCCCTTCCTCCCCTCTTATCTACAGCCCGCCCTCGGGCCGGACGTG
GACGACATTGACGCCGTGGACGCCGATAATCCCCTTGCATGCGTGGAGTA
CGCGGAGAACCAATACACCCACTACCGGGAAAAGGAATGTCGGCCTGGGT
ACGACCCGGCCTACATGGCCAAGCAGCCGTACATCAACGTCCGCATGCGC
GCCATCCTCGTCGACTGGCTCGTGGAGGTTCATTACAAATTCAAGTGCTG
TCCCGAAACCCTCTATTTGACAGTTAATATAATTGATCGTTTCCTAGACC
GAAAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTGGGGGTGACCGCGTTT
TTGATTGCGTGTAAATATGAGGAGATCTACCCGCCGGAGGTAAAGGAGTT
GGTATACATGACGGATGGCGCGTACACTAGGAAGCAAATAATTGACATGG
AGGCTTTCATGTTGGCGACGCTCAAGTTCCAAGTGACCGTTTGTACGACG
CATTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCATGCGGATAACAAGAT
TTATTTCTTGGCGAGTTACATCTCGGAAAGGACATTGCAGGAGGTGGATA
TCTTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCCGCTGTGTATCTGGCG
CGAAAAAATTGTGGGCTACGCCCGTGGAGTCCGACGTTGACGCATTACAC
CAAATACACAGAGGAGGCGTTGTTGCCGTGTTTGAGGGTGTTGAGCCCGT
GGTTGAATTCGAGAAGTCAGTCCTTGCAGGCCATTCGGAAGAAGTATGGG
GCGTCCAAATTCATGATGGTCTCCGGAATGGACTTGGAGGGAATGGTGTA
GGGGGAAGGAGGGGGGGGTTCCGGAATGTATTGAGATAGTATGGCACGGC
CGAGTTTGTGACGTTCTCG
back to top

protein sequence of jgi.p|Nanoce1779_2|592149

>mRNA_5325-protein ID=mRNA_5325-protein|Name=jgi.p|Nanoce1779_2|592149|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVP
RPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFML
ATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFL
PSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSR
SQSLQAIRKKYGASKFMMVSGMDLEGMV*
back to top

mRNA from alignment at scaffold_13:173699..175915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5325 ID=mRNA_5325|Name=jgi.p|Nanoce1779_2|592149|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp|location=Sequence derived from alignment at scaffold_13:173699..175915- (Nannochloropsis oceanica)
GTAACGGCGGGTTGCCATGGCCTTCTTGTCTCTCAGTGATGACGGCTTGG
CCTGGTCCTTGTCCTGATCGGTTGCCGGTACGAGGCCACCCTATCCTATG
CCTACGAATGCCAAGTGTATCGTTATCCACTCCCTAGCTAGGGGTACTTT
GTCACGCGGCGCTTTGATCTTCCTTCTCCCCAATCCTCTCCCCCACTTCA
CTCGATCCGCTAACGCACATCTCATTCTAAATCAGAGCAACCAAAAGCGA
CGAAAAATACACCAACATAAGCCCATGGACAAGATTCTGGCTATGTTATA
CGCTTGGGTAGATGTGCATGAGTGTTCAGCCCGCTGCACTTACCCTTGTT
TTGCCCTTTCCATTATTACCTTGCCCTCCCAACCGACACAGGTGGTCGTT
CCACGAGACGAGCGAGAACACACACGCGTCTGCCCCTGGTTCTTTGTGCC
CCGTTTTATACTCGACACCTACATCCTTAGCAGTCACACAACTATGTACG
CGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTCGGCACAG
CAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAGAAGGCGC
TGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTGGCCTCCG
GGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAGCGGAAAT
ACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGTCCAAGCC
CACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCGAGCTCCA
TCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGCGGCACCG
GTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACTTGGAGGA
GGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTGATTCAAG
AGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGATGGTACGT
AATAATGAAGAGATTGGAGAAGAAGGAGAGGGAGAATGAAGACTTTTGTA
GATCAACTTTTCTTTTCTACTTCTAATTAATAATTTATACAGCCGCGAGA
AGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCACACAGGACT
TGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGGTACGTATTTAAACT
TGTCTTTCTCTTTGAGACTACTTTCTCCACTCTTTCATTACTTGGATGTA
ATCTCAACGCGTTGTCTTTTTAACAACTACTTGTTGCTGTACTTCCCCCT
CCTCCCTTCCTCCCCTCTTATCTACAGCCCGCCCTCGGGCCGGACGTGGA
CGACATTGACGCCGTGGACGCCGATAATCCCCTTGCATGCGTGGAGTACG
CGGAGAACCAATACACCCACTACCGGGAAAAGGAATGTCGGCCTGGGTAC
GACCCGGCCTACATGGCCAAGCAGCCGTACATCAACGTCCGCATGCGCGC
CATCCTCGTCGACTGGCTCGTGGAGGTTCATTACAAATTCAAGTGCTGTC
CCGAAACCCTCTATTTGACAGTTAATATAATTGATCGTTTCCTAGACCGA
AAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTGGGGGTGACCGCGTTTTT
GATTGCGTGTAAATATGAGGAGATCTACCCGCCGGAGGTAAAGGAGTTGG
TATACATGACGGATGGCGCGTACACTAGGAAGCAAATAATTGACATGGAG
GCTTTCATGTTGGCGACGCTCAAGTTCCAAGTGACCGTTTGTACGACGCA
TTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCATGCGGATAACAAGATTT
ATTTCTTGGCGAGTTACATCTCGGAAAGGACATTGCAGGAGGTGGATATC
TTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCCGCTGTGTATCTGGCGCG
AAAAAATTGTGGGCTACGCCCGTGGAGTCCGACGTTGACGCATTACACCA
AATACACAGAGGAGGCGTTGTTGCCGTGTTTGAGGGTGTTGAGCCCGTGG
TTGAATTCGAGAAGTCAGTCCTTGCAGGCCATTCGGAAGAAGTATGGGGC
GTCCAAATTCATGATGGTCTCCGGAATGGACTTGGAGGGAATGGTGTAGG
GGGAAGGAGGGGGGGGTTCCGGAATGTATTGAGATAGTATGGCACGGCCG
AGTTTGTGACGTTCTCG
back to top

Coding sequence (CDS) from alignment at scaffold_13:173699..175915-

>mRNA_5325 ID=mRNA_5325|Name=jgi.p|Nanoce1779_2|592149|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_13:173699..175915- (Nannochloropsis oceanica)
ATGGCCAAGCAGCCGTACATCAACGTCCGCATGCGCGCCATCCTCGTCGA
CTGGCTCGTGGAGGTTCATTACAAATTCAAGTGCTGTCCCGAAACCCTCT
ATTTGACAGTTAATATAATTGATCGTTTCCTAGACCGAAAGCAGGTCCCT
CGGCCCAAGCTGCAACTGGTGGGGGTGACCGCGTTTTTGATTGCGTGTAA
ATATGAGGAGATCTACCCGCCGGAGGTAAAGGAGTTGGTATACATGACGG
ATGGCGCGTACACTAGGAAGCAAATAATTGACATGGAGGCTTTCATGTTG
GCGACGCTCAAGTTCCAAGTGACCGTTTGTACGACGCATTGTTTCATGGT
CCGGTTTCTAAAGGCAGGGCATGCGGATAACAAGATTTATTTCTTGGCGA
GTTACATCTCGGAAAGGACATTGCAGGAGGTGGATATCTTGTGTTTTTTG
CCGTCCATGGTCGCGGCTGCCGCTGTGTATCTGGCGCGAAAAAATTGTGG
GCTACGCCCGTGGAGTCCGACGTTGACGCATTACACCAAATACACAGAGG
AGGCGTTGTTGCCGTGTTTGAGGGTGTTGAGCCCGTGGTTGAATTCGAGA
AGTCAGTCCTTGCAGGCCATTCGGAAGAAGTATGGGGCGTCCAAATTCAT
GATGGTCTCCGGAATGGACTTGGAGGGAATGGTGTAG
back to top
Synonyms
Publications