jgi.p|Nanoce1779_2|592141, mRNA_5324 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592141
Unique NamemRNA_5324
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_13:171649..172686 +

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Properties
Property NameValue
TranscriptId592227
TrackFilteredModels2
ProteinId592141
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:171649..172686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592141gene_5324Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592141mRNA_5324-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5324CDS_5324Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5324 ID=mRNA_5324|Name=jgi.p|Nanoce1779_2|592141|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
GCGCGTGACTTCGACTTGCAATTCGGCGAAGGCAGCAGCAGACCAGCTCT
CGTACTTTCATACACCATTCCGATAATCATGCCCTCTCTCTACCACAGAA
CCAGGCGAATCTGTAGGCAGCAGCCATGCCGGCTGAGGCACCTGAGCCGG
CTGCCAAAGCCAAGGAGGAAGACGAAACAAGCGAGAAAACGATGTTGGCG
GCAGTGGTGGGGCGGGAGGTTGAGACTGAAACCCAACCACATACACCAGT
GCCTTTACCAGATGAGAACGAGGAGCAGAACCAGCTACATCACGAGTATC
ATTTACAGAAGAAGTATTTCATTCCCCGCGCTATGCAGCTTGTGAAACAC
GACGGCCCCATGGTCTGCGTCAACCGCGGCGAGGCTCCCTTTCCCGAGCA
GGGCTTTGACTTCTTTGCATCGATACAAGGTCTTGAGACAGCGCGGCATT
TTCTTTGCCAGGATAAAGAGGCATACAGTGAGTACTGGCTGAAAGAGGCA
CGGGCTCGCTTTCAGGAGCGGAAGGCAGAGAGGGAGTGGAATGCCTTTCT
TAGAAATGATGGGACTTGTGGTGGGCGTCGTCTGTATTGGGCCGTGATGC
AGCTTCCCCCGGGACGGAGTTTCAATTTACACGTCCACCCCTGTTTGGAA
GTGATTCATGTTATTCGTGGACGGTTGCATGAGCGACGGATGATCGGTCC
GCCTTTGTCGTTAATAGAGGAGGAGGGGAAGCTGGTGGAAGAGATGAAAC
CTGTGGACTTATCACGCATGGTGCCACCTCCTCAGTTTCGGGATGGGGTC
TTCTTGGAGGGGAGTTTGAATGCGAATGAAATGGGGAGTGTGCACCAGAG
TTGGACGGATGGGGGCGAAGGGTGTTTGTTGATGTGCATTTGGGGAGGGG
GACATTGTAATATCGAAGGGAGGCGGTTGCCTGAGGGGTTTCGGATGGGA
GGTTGCTGTGGACAGACGATGGTGGAGGAACACAGATAAAGCAGAAGAAA
ATCCATGCTCAACTTAGACATCTTTCAGCGAGAACCCA
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protein sequence of jgi.p|Nanoce1779_2|592141

>mRNA_5324-protein ID=mRNA_5324-protein|Name=jgi.p|Nanoce1779_2|592141|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPAEAPEPAAKAKEEDETSEKTMLAAVVGREVETETQPHTPVPLPDENEE
QNQLHHEYHLQKKYFIPRAMQLVKHDGPMVCVNRGEAPFPEQGFDFFASI
QGLETARHFLCQDKEAYSEYWLKEARARFQERKAEREWNAFLRNDGTCGG
RRLYWAVMQLPPGRSFNLHVHPCLEVIHVIRGRLHERRMIGPPLSLIEEE
GKLVEEMKPVDLSRMVPPPQFRDGVFLEGSLNANEMGSVHQSWTDGGEGC
LLMCIWGGGHCNIEGRRLPEGFRMGGCCGQTMVEEHR*
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mRNA from alignment at scaffold_13:171649..172686+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5324 ID=mRNA_5324|Name=jgi.p|Nanoce1779_2|592141|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at scaffold_13:171649..172686+ (Nannochloropsis oceanica)
GCGCGTGACTTCGACTTGCAATTCGGCGAAGGCAGCAGCAGACCAGCTCT
CGTACTTTCATACACCATTCCGATAATCATGCCCTCTCTCTACCACAGAA
CCAGGCGAATCTGTAGGCAGCAGCCATGCCGGCTGAGGCACCTGAGCCGG
CTGCCAAAGCCAAGGAGGAAGACGAAACAAGCGAGAAAACGATGTTGGCG
GCAGTGGTGGGGCGGGAGGTTGAGACTGAAACCCAACCACATACACCAGT
GCCTTTACCAGATGAGAACGAGGAGCAGAACCAGCTACATCACGAGTATC
ATTTACAGAAGAAGTATTTCATTCCCCGCGCTATGCAGCTTGTGAAACAC
GACGGCCCCATGGTCTGCGTCAACCGCGGCGAGGCTCCCTTTCCCGAGCA
GGGCTTTGACTTCTTTGCATCGATACAAGGTCTTGAGACAGCGCGGCATT
TTCTTTGCCAGGATAAAGAGGCATACAGTGAGTACTGGCTGAAAGAGGCA
CGGGCTCGCTTTCAGGAGCGGAAGGCAGAGAGGGAGTGGAATGCCTTTCT
TAGAAATGATGGGACTTGTGGTGGGCGTCGTCTGTATTGGGCCGTGATGC
AGCTTCCCCCGGGACGGAGTTTCAATTTACACGTCCACCCCTGTTTGGAA
GTGATTCATGTTATTCGTGGACGGTTGCATGAGCGACGGATGATCGGTCC
GCCTTTGTCGTTAATAGAGGAGGAGGGGAAGCTGGTGGAAGAGATGAAAC
CTGTGGACTTATCACGCATGGTGCCACCTCCTCAGTTTCGGGATGGGGTC
TTCTTGGAGGGGAGTTTGAATGCGAATGAAATGGGGAGTGTGCACCAGAG
TTGGACGGATGGGGGCGAAGGGTGTTTGTTGATGTGCATTTGGGGAGGGG
GACATTGTAATATCGAAGGGAGGCGGTTGCCTGAGGGGTTTCGGATGGGA
GGTTGCTGTGGACAGACGATGGTGGAGGAACACAGATAAAGCAGAAGAAA
ATCCATGCTCAACTTAGACATCTTTCAGCGAGAACCCA
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Coding sequence (CDS) from alignment at scaffold_13:171649..172686+

>mRNA_5324 ID=mRNA_5324|Name=jgi.p|Nanoce1779_2|592141|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_13:171649..172686+ (Nannochloropsis oceanica)
ATGCCGGCTGAGGCACCTGAGCCGGCTGCCAAAGCCAAGGAGGAAGACGA
AACAAGCGAGAAAACGATGTTGGCGGCAGTGGTGGGGCGGGAGGTTGAGA
CTGAAACCCAACCACATACACCAGTGCCTTTACCAGATGAGAACGAGGAG
CAGAACCAGCTACATCACGAGTATCATTTACAGAAGAAGTATTTCATTCC
CCGCGCTATGCAGCTTGTGAAACACGACGGCCCCATGGTCTGCGTCAACC
GCGGCGAGGCTCCCTTTCCCGAGCAGGGCTTTGACTTCTTTGCATCGATA
CAAGGTCTTGAGACAGCGCGGCATTTTCTTTGCCAGGATAAAGAGGCATA
CAGTGAGTACTGGCTGAAAGAGGCACGGGCTCGCTTTCAGGAGCGGAAGG
CAGAGAGGGAGTGGAATGCCTTTCTTAGAAATGATGGGACTTGTGGTGGG
CGTCGTCTGTATTGGGCCGTGATGCAGCTTCCCCCGGGACGGAGTTTCAA
TTTACACGTCCACCCCTGTTTGGAAGTGATTCATGTTATTCGTGGACGGT
TGCATGAGCGACGGATGATCGGTCCGCCTTTGTCGTTAATAGAGGAGGAG
GGGAAGCTGGTGGAAGAGATGAAACCTGTGGACTTATCACGCATGGTGCC
ACCTCCTCAGTTTCGGGATGGGGTCTTCTTGGAGGGGAGTTTGAATGCGA
ATGAAATGGGGAGTGTGCACCAGAGTTGGACGGATGGGGGCGAAGGGTGT
TTGTTGATGTGCATTTGGGGAGGGGGACATTGTAATATCGAAGGGAGGCG
GTTGCCTGAGGGGTTTCGGATGGGAGGTTGCTGTGGACAGACGATGGTGG
AGGAACACAGATAA
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Synonyms
Publications