jgi.p|Nanoce1779_2|592134, mRNA_5322 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592134
Unique Name	mRNA_5322
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2323
Alignment location	scaffold_13:167038..169360 +

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Properties


Property Name	Value
TranscriptId	592220
Track	FilteredModels2
ProteinId	592134

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:167038..169360 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592134	gene_5322	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592134	mRNA_5322-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5322	CDS_5322	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:167038..169360+
coding sequence from alignment at scaffold_13:167038..169360+

mRNA sequence

>mRNA_5322 ID=mRNA_5322|Name=jgi.p|Nanoce1779_2|592134|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp
AGTGGTGGTAGTCAGTTTAGGCTGCCATGGTGAGAAGTAAGGTGCGCTTA
TGGATAGGCAGCATGGTAGTCCGGAGAATGGAAAAAGAGGTAAGGGAGTC
GCGTGGCATATGTGATGTAAGAGGAAGAGACAACTATAGTAGTATAATGA
GAGTGTAGGTGGGCGAAGAATCATGCGTGGTGCGACATGTGTGTTATAAT
GTCACTGCGCGTCATTTATTTCTGAACCATTCAAGTTCCAATTGACGAGC
GTGCCGGGATGGCAATGGGTTTGACAATCCCTCGTACTTTCATGACGGGT
CCAACCACTGCGTCACCCCTGCAAATGCTGACCAAGTGCCTCCACACGAT
CCGAGCAGGCGTGGCGAGCACCACCGTGGTGACGTCGGCACGCTCGCTCT
GAAGCCGTTTCGAAGTCGAAGGCAGGAGAAATCGTAACCCCCCAGCACGC
TTTTGAGGCTGGCCTACATGTAACTTGCTTACCACATAGTACATCTCAAC
GCAGAAGATCGTTCCTGACCACATGTCGCTGCCGGCCTGGCCTTCCCGCA
AGCGTGGGGCCACAATAACCTCCCATGCGTCTGCGGCTGCCGCTGTCGTC
GCTCAGTCTCCTCCCTTCCCAAGTAGCAGCTCCACAAGCAGGCGAAAACG
TCCTCTCTCGCGCTCAGACCAAAATCATGAGCGGCAAGACAGCTGCGCAA
ATGACAATGAGGCCCCCGAACTCACGGACGTGGCGGCGGCGCTTTCCCTT
TTAATCCAGCGCTACTACCTCCAACCTCACACCCAAGGCCAAAGCCGAGG
CACCACGAGGCATGCTCGCACAATTACACGCCATCCTTCCTCTTCCTTGA
CAGCATGCTGTCCCGTTGTGCTGCATCACCAGCTGTACACAATTTTGGAC
GATCACACGGCTGTAGACGTGGAGCTCGAGGACTTGCGACGGCGGAACTA
CGTTCGGTTGTTCCGTTTGCTCACCCTGCGGCGAGACGTGGGCGTAATCC
TGACAGCGACATACGTGGCCCGCGTTCAGACTGCTTTGGACCGGCAAGTA
GAAGCTGGACAGGAGCAGGAGCTGCAAGAGCAGGAGCAGCGGAAGGGGGT
GTCAAAGATGGAGGAAGATGCAAGAAGAACGGAGGACTGGAAGAGAGAAT
TGCAACCAACTACAGCAACAAGCAAGACCTCGGCCCAAGACATGGCATTT
GTATTTTCTTTTTTTCTCAAAGCTGTCGAGGCTTTCACAAGCCTCAGCGT
CACGCGGCGGCAGCTTGAAACCCTGTTGACCAACCATCTTGACACACTCT
CACTCCCCTCCAAGCTCTCGCTCACAAGCTTCAGCACCAGCTGTAACATC
GGTCGGCCAAAATACCCGGCAATCGACTTAATAATCCGCGTCCTCCTCCA
CAACGGTTTTCTCGCCCGCCGAGTCGACGCCGCCCACGAAGAAGAAGCTT
ACTGGTTCTCCACACCAGAGCTTGGACGCGTTACCGTCTCCCTCCCCCAC
GGCCGCAAAGCCATCCTGACCGCGCTCCATCGTTCTCGATACAAGGAACT
CTCGGAACGAAATCTCGGTGCGCTGGACCTCAAAGACACAATACTTTCCC
TCCCCTTCCATATCGCGGACTTGGTGGGGAGCAAAGAAGTGCTGACAGAA
TCGACGGCCTCGGGAGTGTTTCTCAAGTTGCCCCCAGCAGCGGCTACGGG
TGAAAGGAGCTCACGGAACAGGACAAGGAGGACGTAATGAGGAGAGGCTA
AAGACCAGTAAAATGGAATTGAAGCCAGCGAATGGTTCAGCATCTCTCCT
TCGGTTTCATCTTGGTAACGAACCTCCACGTTTCAGCGGCTCCGGGTTGC
GTGCCTACCTTTTGATGTTTCCATTCTCACTCAGTCGATCGTTTCCATCT
TGTTGTTCTCTTGGGCAAGGTGCGGGAGGCTGTCTATCTCTTTGAATGCC
CTCAGCATGCAGAGGTTACTAGGTTGCTTAGAAACTTCTCTGTGCAGTTC
CAAGGGTCGGAAGACTCGCGCATGCATTACGGCGCAGTCCCCTGCCCCGG
GGGCACACTTTCCATAGTTTGTGTACAAATTCGCTCGTGAGTACTTTTCG
GACGTAAGCTGAGGCTGTGCAAGTGGGATTTTTGTCTTGGCTGGGATGCT
GTTCAGCGCCTTGATGTAGTTTCCAGAAAGAAGATATGCAAAAGTTGGTC
TGATGTTCAAAAGATCTCAAGGGGCAAGCACGTCAGATGGAGAATAGAGA
CGAGAGGCAGGGAGGGGTGTACAAGCAATGTTGAAGACCAAAAGCAACGG
TTAATCAACAAAACTGAGTAGAT

protein sequence of jgi.p|Nanoce1779_2|592134

>mRNA_5322-protein ID=mRNA_5322-protein|Name=jgi.p|Nanoce1779_2|592134|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MSLPAWPSRKRGATITSHASAAAAVVAQSPPFPSSSSTSRRKRPLSRSDQ
NHERQDSCANDNEAPELTDVAAALSLLIQRYYLQPHTQGQSRGTTRHART
ITRHPSSSLTACCPVVLHHQLYTILDDHTAVDVELEDLRRRNYVRLFRLL
TLRRDVGVILTATYVARVQTALDRQVEAGQEQELQEQEQRKGVSKMEEDA
RRTEDWKRELQPTTATSKTSAQDMAFVFSFFLKAVEAFTSLSVTRRQLET
LLTNHLDTLSLPSKLSLTSFSTSCNIGRPKYPAIDLIIRVLLHNGFLARR
VDAAHEEEAYWFSTPELGRVTVSLPHGRKAILTALHRSRYKELSERNLGA
LDLKDTILSLPFHIADLVGSKEVLTESTASGVFLKLPPAAATGERSSRNR
TRRT*

mRNA from alignment at scaffold_13:167038..169360+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5322 ID=mRNA_5322|Name=jgi.p|Nanoce1779_2|592134|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp|location=Sequence derived from alignment at scaffold_13:167038..169360+ (Nannochloropsis oceanica)
AGTGGTGGTAGTCAGTTTAGGCTGCCATGGTGAGAAGTAAGGTGCGCTTA
TGGATAGGCAGCATGGTAGTCCGGAGAATGGAAAAAGAGGTAAGGGAGTC
GCGTGGCATATGTGATGTAAGAGGAAGAGACAACTATAGTAGTATAATGA
GAGTGTAGGTGGGCGAAGAATCATGCGTGGTGCGACATGTGTGTTATAAT
GTCACTGCGCGTCATTTATTTCTGAACCATTCAAGTTCCAATTGACGAGC
GTGCCGGGATGGCAATGGGTTTGACAATCCCTCGTACTTTCATGACGGGT
CCAACCACTGCGTCACCCCTGCAAATGCTGACCAAGTGCCTCCACACGAT
CCGAGCAGGCGTGGCGAGCACCACCGTGGTGACGTCGGCACGCTCGCTCT
GAAGCCGTTTCGAAGTCGAAGGCAGGAGAAATCGTAACCCCCCAGCACGC
TTTTGAGGCTGGCCTACATGTAACTTGCTTACCACATAGTACATCTCAAC
GCAGAAGATCGTTCCTGACCACATGTCGCTGCCGGCCTGGCCTTCCCGCA
AGCGTGGGGCCACAATAACCTCCCATGCGTCTGCGGCTGCCGCTGTCGTC
GCTCAGTCTCCTCCCTTCCCAAGTAGCAGCTCCACAAGCAGGCGAAAACG
TCCTCTCTCGCGCTCAGACCAAAATCATGAGCGGCAAGACAGCTGCGCAA
ATGACAATGAGGCCCCCGAACTCACGGACGTGGCGGCGGCGCTTTCCCTT
TTAATCCAGCGCTACTACCTCCAACCTCACACCCAAGGCCAAAGCCGAGG
CACCACGAGGCATGCTCGCACAATTACACGCCATCCTTCCTCTTCCTTGA
CAGCATGCTGTCCCGTTGTGCTGCATCACCAGCTGTACACAATTTTGGAC
GATCACACGGCTGTAGACGTGGAGCTCGAGGACTTGCGACGGCGGAACTA
CGTTCGGTTGTTCCGTTTGCTCACCCTGCGGCGAGACGTGGGCGTAATCC
TGACAGCGACATACGTGGCCCGCGTTCAGACTGCTTTGGACCGGCAAGTA
GAAGCTGGACAGGAGCAGGAGCTGCAAGAGCAGGAGCAGCGGAAGGGGGT
GTCAAAGATGGAGGAAGATGCAAGAAGAACGGAGGACTGGAAGAGAGAAT
TGCAACCAACTACAGCAACAAGCAAGACCTCGGCCCAAGACATGGCATTT
GTATTTTCTTTTTTTCTCAAAGCTGTCGAGGCTTTCACAAGCCTCAGCGT
CACGCGGCGGCAGCTTGAAACCCTGTTGACCAACCATCTTGACACACTCT
CACTCCCCTCCAAGCTCTCGCTCACAAGCTTCAGCACCAGCTGTAACATC
GGTCGGCCAAAATACCCGGCAATCGACTTAATAATCCGCGTCCTCCTCCA
CAACGGTTTTCTCGCCCGCCGAGTCGACGCCGCCCACGAAGAAGAAGCTT
ACTGGTTCTCCACACCAGAGCTTGGACGCGTTACCGTCTCCCTCCCCCAC
GGCCGCAAAGCCATCCTGACCGCGCTCCATCGTTCTCGATACAAGGAACT
CTCGGAACGAAATCTCGGTGCGCTGGACCTCAAAGACACAATACTTTCCC
TCCCCTTCCATATCGCGGACTTGGTGGGGAGCAAAGAAGTGCTGACAGAA
TCGACGGCCTCGGGAGTGTTTCTCAAGTTGCCCCCAGCAGCGGCTACGGG
TGAAAGGAGCTCACGGAACAGGACAAGGAGGACGTAATGAGGAGAGGCTA
AAGACCAGTAAAATGGAATTGAAGCCAGCGAATGGTTCAGCATCTCTCCT
TCGGTTTCATCTTGGTAACGAACCTCCACGTTTCAGCGGCTCCGGGTTGC
GTGCCTACCTTTTGATGTTTCCATTCTCACTCAGTCGATCGTTTCCATCT
TGTTGTTCTCTTGGGCAAGGTGCGGGAGGCTGTCTATCTCTTTGAATGCC
CTCAGCATGCAGAGGTTACTAGGTTGCTTAGAAACTTCTCTGTGCAGTTC
CAAGGGTCGGAAGACTCGCGCATGCATTACGGCGCAGTCCCCTGCCCCGG
GGGCACACTTTCCATAGTTTGTGTACAAATTCGCTCGTGAGTACTTTTCG
GACGTAAGCTGAGGCTGTGCAAGTGGGATTTTTGTCTTGGCTGGGATGCT
GTTCAGCGCCTTGATGTAGTTTCCAGAAAGAAGATATGCAAAAGTTGGTC
TGATGTTCAAAAGATCTCAAGGGGCAAGCACGTCAGATGGAGAATAGAGA
CGAGAGGCAGGGAGGGGTGTACAAGCAATGTTGAAGACCAAAAGCAACGG
TTAATCAACAAAACTGAGTAGAT

Coding sequence (CDS) from alignment at scaffold_13:167038..169360+

>mRNA_5322 ID=mRNA_5322|Name=jgi.p|Nanoce1779_2|592134|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_13:167038..169360+ (Nannochloropsis oceanica)
ATGTCGCTGCCGGCCTGGCCTTCCCGCAAGCGTGGGGCCACAATAACCTC
CCATGCGTCTGCGGCTGCCGCTGTCGTCGCTCAGTCTCCTCCCTTCCCAA
GTAGCAGCTCCACAAGCAGGCGAAAACGTCCTCTCTCGCGCTCAGACCAA
AATCATGAGCGGCAAGACAGCTGCGCAAATGACAATGAGGCCCCCGAACT
CACGGACGTGGCGGCGGCGCTTTCCCTTTTAATCCAGCGCTACTACCTCC
AACCTCACACCCAAGGCCAAAGCCGAGGCACCACGAGGCATGCTCGCACA
ATTACACGCCATCCTTCCTCTTCCTTGACAGCATGCTGTCCCGTTGTGCT
GCATCACCAGCTGTACACAATTTTGGACGATCACACGGCTGTAGACGTGG
AGCTCGAGGACTTGCGACGGCGGAACTACGTTCGGTTGTTCCGTTTGCTC
ACCCTGCGGCGAGACGTGGGCGTAATCCTGACAGCGACATACGTGGCCCG
CGTTCAGACTGCTTTGGACCGGCAAGTAGAAGCTGGACAGGAGCAGGAGC
TGCAAGAGCAGGAGCAGCGGAAGGGGGTGTCAAAGATGGAGGAAGATGCA
AGAAGAACGGAGGACTGGAAGAGAGAATTGCAACCAACTACAGCAACAAG
CAAGACCTCGGCCCAAGACATGGCATTTGTATTTTCTTTTTTTCTCAAAG
CTGTCGAGGCTTTCACAAGCCTCAGCGTCACGCGGCGGCAGCTTGAAACC
CTGTTGACCAACCATCTTGACACACTCTCACTCCCCTCCAAGCTCTCGCT
CACAAGCTTCAGCACCAGCTGTAACATCGGTCGGCCAAAATACCCGGCAA
TCGACTTAATAATCCGCGTCCTCCTCCACAACGGTTTTCTCGCCCGCCGA
GTCGACGCCGCCCACGAAGAAGAAGCTTACTGGTTCTCCACACCAGAGCT
TGGACGCGTTACCGTCTCCCTCCCCCACGGCCGCAAAGCCATCCTGACCG
CGCTCCATCGTTCTCGATACAAGGAACTCTCGGAACGAAATCTCGGTGCG
CTGGACCTCAAAGACACAATACTTTCCCTCCCCTTCCATATCGCGGACTT
GGTGGGGAGCAAAGAAGTGCTGACAGAATCGACGGCCTCGGGAGTGTTTC
TCAAGTTGCCCCCAGCAGCGGCTACGGGTGAAAGGAGCTCACGGAACAGG
ACAAGGAGGACGTAA

Synonyms

Publications