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Properties
| Property Name | Value |
|---|
| TranscriptId | 63696 |
| Track | FilteredModels2 |
| ProteinId | 63610 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:164602..166714 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5320 ID=mRNA_5320|Name=jgi.p|Nanoce1779_2|63610|organism=Nannochloropsis oceanica|type=mRNA|length=1987bp
TCAGGCATATCAATCCTGACAGTACATGGCTTGTTGATAGCTGGCTGCAG
TATCATGCCGCTCCTGATGCGCTCGATCTGACTTGTGACGTAACTCGCGG
CCACCTCACCTGCGCTTATTCACCTCTCCCTTCACCACGCCACAGAAATG
TCACTCGCCACGCACAGATCCACGGCACATCGTCCATATAAAAAGAGAGG
AAAATACTTGATGTCAAAGATATGGCGTCCTTTCCTCATCCTCCCAGCAT
GCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAATG
CACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGACG
CAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAACGC
CTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCCCC
CTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCACT
GAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCAGC
AGCAGCAGCTCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTCTG
GCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGTCA
CGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAAGC
GAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAGTT
TCAGCAGCAACACTTCCGAGCAGGTCATCGAGACCAAGCCCTTCCCCACA
ACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCCTT
CGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTGGG
AGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCCAA
CAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCAGG
AGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAGAC
CACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATGAT
ACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAATT
CCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTTTT
CCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAGAT
TATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAATT
GCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATACG
GAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGTTA
AGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTGGG
AAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGACT
GTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGGAT
TGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGGGA
ATGGAAGGAGTTTTTCGACAGCAGGAAAGAGAAGTACTGGGCGCCGTTGC
CGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGATC
GAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTGCGAA
TGGAGGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGCAGCCTA
AGAGGGTGAGTGCGAGGCAACTGCAGAGGAAGCGGTCGCGCAGTCTTGAG
AAAAGCCAGGTCGATGCTGGGGTGTCTGTAACTTCCTTTTAGGTGTATGA
TTGACTGGGCGAGTAGGAGATGGAGGTTTTTGGCTGTTATAGGGACTACC
AAAAACCCAAAAAAAGCAAGAGATGGGAGAAGCGTAC back to topprotein sequence of jgi.p|Nanoce1779_2|63610 >mRNA_5320-protein ID=mRNA_5320-protein|Name=jgi.p|Nanoce1779_2|63610|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MASFPHPPSMPFRGSLIIYSQLICSNAPFHLSLPSSHSARRPTQATAVQG
LEQESGFLNASSSVRLFRPKLADAVPPPLLWCFMVTMCEMVTTEVSAETE
DRDDAVLVAAAAAPASKAGATECGKSGTCVSISSSTSDSSNESRLGHSVS
TDSFLKHNEANVPSLLHRGSAGCASSFSSNTSEQVIETKPFPTTHHLTAP
FTGVAAVAPFVAIGDNQGPVRHMIDWERSSKQITTWGTNPVLQQYQQHSL
SGSKGSDHAGVAAIACSPAPSAHFKRPRPTTTKSTTTTSSSNDTGRAQTP
SNHDISPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLN
AVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHG
GKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPL
AYIRRAHWREWKEFFDSRKEKYWAPLPGSSCETELIVRGAPKIEDGEEET
GHGVRPTGANGGRGDSPTALHSASQPKRVSARQLQRKRSRSLEKSQVDAG
VSVTSF* back to topmRNA from alignment at scaffold_13:164602..166714- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5320 ID=mRNA_5320|Name=jgi.p|Nanoce1779_2|63610|organism=Nannochloropsis oceanica|type=mRNA|length=2113bp|location=Sequence derived from alignment at scaffold_13:164602..166714- (Nannochloropsis oceanica)
TCAGGCATATCAATCCTGACAGTACATGGCTTGTTGATAGCTGGCTGCAG
TATCATGCCGCTCCTGATGCGCTCGATCTGACTTGTGACGTAACTCGCGG
CCACCTCACCTGCGCTTATTCACCTCTCCCTTCACCACGCCACAGAAATG
TCACTCGCCACGCACAGATCCACGGCACATCGTCCATATAAAAAGAGAGG
AAAATACTTGATGTCAAAGATATGGCGTCCTTTCCTCATCCTCCCAGCAT
GCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAATG
CACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGACG
CAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAACGC
CTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCCCC
CTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCACT
GAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCAGC
AGCAGCAGCTCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTCTG
GCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGTCA
CGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAAGC
GAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAGTT
TCAGCAGCAACACTTCCGAGCAGGTCATCGAGACCAAGCCCTTCCCCACA
ACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCCTT
CGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTGGG
AGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCCAA
CAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCAGG
AGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAGAC
CACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATGAT
ACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAATT
CCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTTTT
CCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAGAT
TATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAATT
GCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATACG
GAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGTTA
AGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTGGG
AAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGACT
GTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGGAT
TGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGGGA
ATGGAAGGAGTTTTTCGACAGCAGGAAAGAGAAGTACTGGGCGCCGTTGC
CGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGATC
GAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTGCGAA
TGGAGGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGGCTGCTA
AACCTGTGACTGCATCGATGGCGGGGTCTTCATCGGAGGAGGAGGGGGAG
GAGGGAGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGGAGGGGAGGA
GCAGGGGGAGGAGCAGCAGCAGCCTAAGAGGGTGAGTGCGAGGCAACTGC
AGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGGTG
TCTGTAACTTCCTTTTAGGTGTATGATTGACTGGGCGAGTAGGAGATGGA
GGTTTTTGGCTGTTATAGGGACTACCAAAAACCCAAAAAAAGCAAGAGAT
GGGAGAAGCGTAC back to topCoding sequence (CDS) from alignment at scaffold_13:164602..166714- >mRNA_5320 ID=mRNA_5320|Name=jgi.p|Nanoce1779_2|63610|organism=Nannochloropsis oceanica|type=CDS|length=3342bp|location=Sequence derived from alignment at scaffold_13:164602..166714- (Nannochloropsis oceanica)
CAGCCTAAGAGGGTGAGTGCGAGGCAACTGCAGAGGAAGCGGTCGCGCAG
TCTTGAGAAAAGCCAGGTCGATGCTGGGGTGTCTGTAACTTCCTTTTAGA
TGGCGTCCTTTCCTCATCCTCCCAGCATGCCCTTCCGAGGTAGTCTCATC
ATCTATAGCCAGCTCATTTGCTCAAATGCACCTTTCCACCTCTCCCTCCC
CTCTTCCCACAGTGCCCGTCGTCCGACGCAAGCTACAGCGGTGCAAGGGC
TTGAACAGGAGTCAGGGTTTCTCAACGCCTCTTCTTCCGTTCGCCTCTTT
CGCCCAAAACTTGCTGACGCCGTCCCCCCTCCGCTTCTGTGGTGCTTCAT
GGTGACGATGTGCGAAATGGTGACCACTGAAGTATCTGCCGAGACCGAAG
ATCGTGACGATGCTGTCCTCGTTGCAGCAGCAGCAGCTCCAGCATCTAAA
GCAGGCGCCACGGAATGCGGAAAGTCTGGCACATGTGTAAGCATAAGTAG
CAGCACGAGCGACAGCAGCAATGAGTCACGCCTCGGGCATAGCGTCAGCA
CTGACAGCTTTCTCAAACACAACGAAGCGAACGTTCCCTCTCTTCTCCAC
CGCGGCAGCGCTGGATGCGCGAGCAGTTTCAGCAGCAACACTTCCGAGCA
GGTCATCGAGACCAAGCCCTTCCCCACAACCCACCACCTGACTGCGCCCT
TCACGGGCGTGGCCGCCGTGGCTCCCTTCGTAGCTATCGGCGACAACCAA
GGCCCCGTGCGGCACATGATAGATTGGGAGCGATCAAGCAAGCAAATCAC
TACCTGGGGCACCAACCCAGTCCTCCAACAATACCAACAACACAGCCTGA
GCGGCAGCAAAGGTTCAGACCATGCAGGAGTGGCCGCCATTGCCTGCAGC
CCCGCCCCCAGCGCACACTTCAAAAGACCACGACCCACCACTACCAAAAG
CACCACCACTACCAGCAGCAGCAATGATACGGGAAGGGCACAAACCCCTT
CGAATCACGACATATCCCCCCAAGAATTCCTCTGGGGCATACTGCAAGAG
CGGGGGTATGAGACTTCGCCTTTGTTTTCCAAGACGCAAGCTTTCTTCCG
CCCGCCCACCCCGAAGCAAGTAGAAGATTATGACATTGCTCTTTTGAACG
CCGTAAAAACGGGGGATTTGGCACAATTGCAGGACATGGCTCAACAGGGC
CGACAGATGGATGCGTGTAATAAATACGGAGAGAGCATCGTCCACATCTC
GTGCCGAAGGGGCCAGGCGGAAACGTTAAGGTTCTTGTTGGCTCACGGGG
GGAAGGTGCACATGTGTGATGATTTGGGAAGGACGCCATTGCATGACGCG
TGTTGGGCGAAGGAGCCGGTGTTCGACTGTATATCAACAATCTTAGACGC
GGACCCCGAGTTAATTCGTATGGTGGATTGTCGCGGAGCAAGTCCTTTGG
CCTACATTCGGAGAGCGCATTGGAGGGAATGGAAGGAGTTTTTCGACAGC
AGGAAAGAGAAGTACTGGGCGCCGTTGCCGGGGTCTTCGTGTGAGACGGA
GTTGATAGTGAGGGGGGCACCGAAGATCGAGGATGGGGAGGAGGAGACGG
GGCATGGCGTGAGACCGACGGGTGCGAATGGAGGAAGAGGGGACAGTCCC
ACCGCGCTGCACTCGGCATCGCAGCCTAAGAGGGTGAGTGCGAGGCAACT
GCAGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGG
TGTCTGTAACTTCCTTTTAGATGGCGTCCTTTCCTCATCCTCCCAGCATG
CCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAATGC
ACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGACGC
AAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAACGCC
TCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCCCCC
TCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCACTG
AAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCAGCA
GCAGCAGCTCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTCTGG
CACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGTCAC
GCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAAGCG
AACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAGTTT
CAGCAGCAACACTTCCGAGCAGGTCATCGAGACCAAGCCCTTCCCCACAA
CCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCCTTC
GTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTGGGA
GCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCCAAC
AATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCAGGA
GTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAGACC
ACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATGATA
CGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAATTC
CTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTTTTC
CAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAGATT
ATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAATTG
CAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATACGG
AGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGTTAA
GGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTGGGA
AGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGACTG
TATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGGATT
GTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGGGAA
TGGAAGGAGTTTTTCGACAGCAGGAAAGAGAAGTACTGGGCGCCGTTGCC
GGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGATCG
AGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTGCGAAT
GGAGGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCG back to top
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