jgi.p|Nanoce1779_2|577611, mRNA_532 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577611
Unique NamemRNA_532
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length812
Alignment locationscaffold_3:1289088..1290526 +

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Properties
Property NameValue
TranscriptId577697
TrackFilteredModels2
ProteinId577611
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1289088..1290526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577611gene_532Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577611mRNA_532-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_532CDS_532Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_532 ID=mRNA_532|Name=jgi.p|Nanoce1779_2|577611|organism=Nannochloropsis oceanica|type=mRNA|length=812bp
ACAGAAGAGGACCTATTCACCATGAGAGACTTGGCCCTGCGGTTTGCCCG
GGCCTTCGAGGGCTTTGGCTTGTCCACTAGCATGACCTCGCCGCGCAACA
TGGCCAAGGAGCGCCTGTCTATCATTCTTGCCCATCAACGTCTGGCAGAC
GTAGATATTCAGCAGCTTCAGGCTGATGTCCTAGCGTGCGTACAGAAATA
TGTCAAGATCACACCTGAGCAAGCTGTCTCCATAAAAGTGAAGCAAGACG
GGGGTGTCGATGTGTTCGAGATGCAGATTGCCTTGGCAGGGGCCGCTAGC
AACATGACGGCTGCCAAGCGGTAAAAAGAAAAGTCCGTTGTATGCCGACA
TCAGGACATCCTGTAGCCGTGCTCCGATGTATCGAGTGTGCTGTATGCTT
TTGGAAGCCGCTACTGTTCGAGCGCCAAGAGTAAAAGGCCATACCGAGGA
GGGCAACAATGCGGGGAGAGGTAGGAAAAGCAAAAGAGTGGGAGGGATGA
CCCACGTAGGGGGTATGCATATCGATTTTGTGTCTCATCAACCCTACCGT
CCGGAGGTTCCGGGAGGAATGGGACCCTCAACTACCCAAAGATTTGGGTT
GTCTGTTGGAGAGGAAAATTGGGCTCTCAGCGCGTGGAATGAGTTTTACA
AGTAATCTTGGCGTGTGTGGAATCGATTACTTCGATATTTGAAATCGTTT
ACCCACTTAAAACGAATAGATCCAGGGAGATGAGCGAGAGACGGGGAACA
TAAGCGCTGGGGCAGGTCTGCTACATAACAAAAACAAACGATGAAGGCGC
AAGCCACAAAAA
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protein sequence of jgi.p|Nanoce1779_2|577611

>mRNA_532-protein ID=mRNA_532-protein|Name=jgi.p|Nanoce1779_2|577611|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MRDLALRFARAFEGFGLSTSMTSPRNMAKERLSIILAHQRLADVDIQQLQ
ADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALAGAASNMTAAKR
*
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mRNA from alignment at scaffold_3:1289088..1290526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_532 ID=mRNA_532|Name=jgi.p|Nanoce1779_2|577611|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_3:1289088..1290526+ (Nannochloropsis oceanica)
ACAGAAGAGGACCTATTCACCATGAGAGACTTGGCCCTGCGGTTTGCCCG
GGCCTTCGAGGGCTTTGGCTTGTCCACTAGCATGACCTCGCCGCGGTAAG
TGGAAGAAGCAAGAGAATAGAGAGGACAGGAGGAGAGGGAAAGAGAAATG
AGGCGGCCATGCCAGTCCGAGCATCGCATCCTCGCATATGCACCCTCTAA
ACCCACTCAACCACACAGCAACATGGCCAAGGAGCGCCTGTCTATCATTC
TTGCCCATCAACGTCTGGCAGACGTAGATATTCAGCAGCTTCAGGTACGT
GCAGGCTGCCGCATCAACGTTATCGTCATAAGGTGTCGCAGGATGGTTAT
AGCTGCATTCACATGTCATCTCACAAAAAAAACAGGCTGATGTCCTAGCG
TGCGTACAGAAATATGTCAAGATCACACCTGAGCAAGCTGTCTCCATAAA
AGGTGCGTGTGTGTGTGAGCGGAAGGAGGCACTTTGTGGGAGAGCCCAGC
GACGAGAGTTGAACTGAGGGAGCAGCGTTTTCGTGCAGGCGTACCATCCA
GACCTGCTTTCTCTTGCGAATTTGCTTTTTCGTGTTGCTTTGCTGTATGT
CGGTCATGGCTATTTGACGGCATCGTCGTGTAATGGACTTTCTAGCTGCA
CCTCCCTGTTTTCCCTCGTCCACCCTACTAGCAGTACCCACTCATCTCTC
ATCTCTTATCTCTCATCTCTAATTCTACCCGTCTCCCCACCCCCAAACCC
ACCCACAGTGAAGCAAGACGGGGGTGTCGATGTGTTCGAGATGCAGATTG
CCTTGGCAGGGGCCGCTAGCAACATGACGGCTGCCAAGCGGTAAAAAGAA
AAGTCCGTTGTATGCCGACATGTATGTGTATGAGGGAGAGAAAAAGAAAA
GGACGGACAGTAGGGAGATGTGGTAGAGGGAGGGGAGATGTAGAAAAGAG
GTAATTTTTTCGTCGATCGACCCAATAGCAGGACATCCTGTAGCCGTGCT
CCGATGTATCGAGTGTGCTGTATGCTTTTGGAAGCCGCTACTGTTCGAGC
GCCAAGAGTAAAAGGCCATACCGAGGAGGGCAACAATGCGGGGAGAGGTA
GGAAAAGCAAAAGAGTGGGAGGGATGACCCACGTAGGGGGTATGCATATC
GATTTTGTGTCTCATCAACCCTACCGTCCGGAGGTTCCGGGAGGAATGGG
ACCCTCAACTACCCAAAGATTTGGGTTGTCTGTTGGAGAGGAAAATTGGG
CTCTCAGCGCGTGGAATGAGTTTTACAAGTAATCTTGGCGTGTGTGGAAT
CGATTACTTCGATATTTGAAATCGTTTACCCACTTAAAACGAATAGATCC
AGGGAGATGAGCGAGAGACGGGGAACATAAGCGCTGGGGCAGGTCTGCTA
CATAACAAAAACAAACGATGAAGGCGCAAGCCACAAAAA
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Coding sequence (CDS) from alignment at scaffold_3:1289088..1290526+

>mRNA_532 ID=mRNA_532|Name=jgi.p|Nanoce1779_2|577611|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_3:1289088..1290526+ (Nannochloropsis oceanica)
ATGAGAGACTTGGCCCTGCGGTTTGCCCGGGCCTTCGAGGGCTTTGGCTT
GTCCACTAGCATGACCTCGCCGCGCAACATGGCCAAGGAGCGCCTGTCTA
TCATTCTTGCCCATCAACGTCTGGCAGACGTAGATATTCAGCAGCTTCAG
GCTGATGTCCTAGCGTGCGTACAGAAATATGTCAAGATCACACCTGAGCA
AGCTGTCTCCATAAAAGTGAAGCAAGACGGGGGTGTCGATGTGTTCGAGA
TGCAGATTGCCTTGGCAGGGGCCGCTAGCAACATGACGGCTGCCAAGCGG
TAAATGAGAGACTTGGCCCTGCGGTTTGCCCGGGCCTTCGAGGGCTTTGG
CTTGTCCACTAGCATGACCTCGCCGCGCAACATGGCCAAGGAGCGCCTGT
CTATCATTCTTGCCCATCAACGTCTGGCAGACGTAGATATTCAGCAGCTT
CAGGCTGATGTCCTAGCGTGCGTACAGAAATATGTCAAGATCACACCTGA
GCAAGCTGTCTCCATAAAAGTGAAGCAAGACGGGGGTGTCGATGTGTTCG
AGATGCAGATTGCCTTGGCAGGGGCCGCTAGCAACATGACGGCTGCCAAG
CGGTAAATGAGAGACTTGGCCCTGCGGTTTGCCCGGGCCTTCGAGGGCTT
TGGCTTGTCCACTAGCATGACCTCGCCGCGCAACATGGCCAAGGAGCGCC
TGTCTATCATTCTTGCCCATCAACGTCTGGCAGACGTAGATATTCAGCAG
CTTCAGGCTGATGTCCTAGCGTGCGTACAGAAATATGTCAAGATCACACC
TGAGCAAGCTGTCTCCATAAAAGTGAAGCAAGACGGGGGTGTCGATGTGT
TCGAGATGCAGATTGCCTTGGCAGGGGCCGCTAGCAACATGACGGCTGCC
AAGCGGTAAATGAGAGACTTGGCCCTGCGGTTTGCCCGGGCCTTCGAGGG
CTTTGGCTTGTCCACTAGCATGACCTCGCCGCGCAACATGGCCAAGGAGC
GCCTGTCTATCATTCTTGCCCATCAACGTCTGGCAGACGTAGATATTCAG
CAGCTTCAGGCTGATGTCCTAGCGTGCGTACAGAAATATGTCAAGATCAC
ACCTGAGCAAGCTGTCTCCATAAAAGTGAAGCAAGACGGGGGTGTCGATG
TGTTCGAGATGCAGATTGCCTTGGCAGGGGCCGCTAGCAACATGACGGCT
GCCAAGCGGTAA
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Synonyms
Publications