jgi.p|Nanoce1779_2|592103, mRNA_5315 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592103
Unique NamemRNA_5315
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length853
Alignment locationscaffold_13:147395..148482 -

Link to JBrowse

Properties
Property NameValue
TranscriptId592189
TrackFilteredModels2
ProteinId592103
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:147395..148482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592103gene_5315Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592103mRNA_5315-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5315CDS_5315Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5315 ID=mRNA_5315|Name=jgi.p|Nanoce1779_2|592103|organism=Nannochloropsis oceanica|type=mRNA|length=853bp
CAGACAACGGCAGAAGCTGCTCCGCATCGCACGACTCATTAAAAGCGGAT
CAGAAGACAAGCAGAACAAGCATCATCAACTATATACATAAACGTCATGC
TTTCATTCATCAAAAATGTATTGGTGCTGGCCCTTTTCTTGATCCCCGTG
GCATGTAACTACATTCCAGGTGAAGCGGCCAAGGAAAACGTCACACCCCT
CCTAAGAGGAGGCGAGGACGCTGCGAGCGGCGTCAAGGTCACGGGCTGCG
CCATGCCACTCACCTTAGATGTCAGCATGCAGCAACGCAAAGCTAATATA
TCGCTGGGGCTGTCTGTCCGCACTGACCTAGGCGATGGAGAAGAGTGGAT
CACGGGTCCCGTGACTTATTTTCCTGGGGCGCAAGTTAACTTGACCCTCC
CCATCATCCCCTGCCGCGAGACTGTGCATGCATTGATAATGCAGGTAATT
AATTCGTCAGAGATTTTGCTATTGGATCGAGTCTCGAGCAATGTTCAGGG
AGAATGGCAGAGGAGTCTACCTCAGCCATCCGCAAGTGCGATTAAAATAA
ATCAGTTCAAGACATTGGTTGCTTTTGAAGTCGATGCTTCGTAAAGAAAA
GGGAAAGCGAGGAGGATGCACCGAGTGAATAAGGCAGTAAACGACGGTTA
AATTGATCAAGCATACGAACCCCCAAAAGTGTGATAAATGAAGGGGCAAT
TTCTCACTCTCTTGCTGCCAACAAGATCAGCAACAACTGTATCTCACAAA
GGTCCAAGCACAGGAACGCAAGGTGTTATCTGAATTTACACAAAATGAGA
AAAACAAAGAGCAGAGTTTCGGTGAACAAAAAATAAAGCCAAGCCCCTCA
GCC
back to top

protein sequence of jgi.p|Nanoce1779_2|592103

>mRNA_5315-protein ID=mRNA_5315-protein|Name=jgi.p|Nanoce1779_2|592103|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MLSFIKNVLVLALFLIPVACNYIPGEAAKENVTPLLRGGEDAASGVKVTG
CAMPLTLDVSMQQRKANISLGLSVRTDLGDGEEWITGPVTYFPGAQVNLT
LPIIPCRETVHALIMQVINSSEILLLDRVSSNVQGEWQRSLPQPSASAIK
INQFKTLVAFEVDAS*
back to top

mRNA from alignment at scaffold_13:147395..148482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5315 ID=mRNA_5315|Name=jgi.p|Nanoce1779_2|592103|organism=Nannochloropsis oceanica|type=mRNA|length=1088bp|location=Sequence derived from alignment at scaffold_13:147395..148482- (Nannochloropsis oceanica)
CAGACAACGGCAGAAGCTGCTCCGCATCGCACGACTCATTAAAAGCGGAT
CAGAAGACAAGCAGAACAAGCATCATCAACTATATACATAAACGTCATGC
TTTCATTCATCAAAAATGTATTGGTGCTGGCCCTTTTCTTGATCCCCGTG
GCATGTAACTACATTCCAGGTATGTGGTGTGGTTAAATTCATGCGCGGGC
TAGCTCTTTTGTGTGTGAGGTGACCGAATATATTTTGCCGGCCCGATCGA
CCGTGTTCCTCTAAGTCCTTCATTCCCTACTATTTCTCAAACCGTGTACC
AATCCATGTATGTCTGTGAGTCATGTGACCACCGAGCACAAATGTGTCAG
TATACTTTCGATTATCAGCTCGAACAATCGCTAATCATTTCTACCGAACC
CAAGGTGAAGCGGCCAAGGAAAACGTCACACCCCTCCTAAGAGGAGGCGA
GGACGCTGCGAGCGGCGTCAAGGTCACGGGCTGCGCCATGCCACTCACCT
TAGATGTCAGCATGCAGCAACGCAAAGCTAATATATCGCTGGGGCTGTCT
GTCCGCACTGACCTAGGCGATGGAGAAGAGTGGATCACGGGTCCCGTGAC
TTATTTTCCTGGGGCGCAAGTTAACTTGACCCTCCCCATCATCCCCTGCC
GCGAGACTGTGCATGCATTGATAATGCAGGTAATTAATTCGTCAGAGATT
TTGCTATTGGATCGAGTCTCGAGCAATGTTCAGGGAGAATGGCAGAGGAG
TCTACCTCAGCCATCCGCAAGTGCGATTAAAATAAATCAGTTCAAGACAT
TGGTTGCTTTTGAAGTCGATGCTTCGTAAAGAAAAGGGAAAGCGAGGAGG
ATGCACCGAGTGAATAAGGCAGTAAACGACGGTTAAATTGATCAAGCATA
CGAACCCCCAAAAGTGTGATAAATGAAGGGGCAATTTCTCACTCTCTTGC
TGCCAACAAGATCAGCAACAACTGTATCTCACAAAGGTCCAAGCACAGGA
ACGCAAGGTGTTATCTGAATTTACACAAAATGAGAAAAACAAAGAGCAGA
GTTTCGGTGAACAAAAAATAAAGCCAAGCCCCTCAGCC
back to top

Coding sequence (CDS) from alignment at scaffold_13:147395..148482-

>mRNA_5315 ID=mRNA_5315|Name=jgi.p|Nanoce1779_2|592103|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_13:147395..148482- (Nannochloropsis oceanica)
GTGAAGCGGCCAAGGAAAACGTCACACCCCTCCTAAGAGGAGGCGAGGAC
GCTGCGAGCGGCGTCAAGGTCACGGGCTGCGCCATGCCACTCACCTTAGA
TGTCAGCATGCAGCAACGCAAAGCTAATATATCGCTGGGGCTGTCTGTCC
GCACTGACCTAGGCGATGGAGAAGAGTGGATCACGGGTCCCGTGACTTAT
TTTCCTGGGGCGCAAGTTAACTTGACCCTCCCCATCATCCCCTGCCGCGA
GACTGTGCATGCATTGATAATGCAGGTAATTAATTCGTCAGAGATTTTGC
TATTGGATCGAGTCTCGAGCAATGTTCAGGGAGAATGGCAGAGGAGTCTA
CCTCAGCCATCCGCAAGTGCGATTAAAATAAATCAGTTCAAGACATTGGT
TGCTTTTGAAGTCGATGCTTCGTAAATGCTTTCATTCATCAAAAATGTAT
TGGTGCTGGCCCTTTTCTTGATCCCCGTGGCATGTAACTACATTCCAGGT
GAAGCGGCCAAGGAAAACGTCACACCCCTCCTAAGAGGAGGCGAGGACGC
TGCGAGCGGCGTCAAGGTCACGGGCTGCGCCATGCCACTCACCTTAGATG
TCAGCATGCAGCAACGCAAAGCTAATATATCGCTGGGGCTGTCTGTCCGC
ACTGACCTAGGCGATGGAGAAGAGTGGATCACGGGTCCCGTGACTTATTT
TCCTGGGGCGCAAGTTAACTTGACCCTCCCCATCATCCCCTGCCGCGAGA
CTGTGCATGCATTGATAATGCAGGTAATTAATTCGTCAGAGATTTTGCTA
TTGGATCGAGTCTCGAGCAATGTTCAGGGAGAATGGCAGAGGAGTCTACC
TCAGCCATCCGCAAGTGCGATTAAAATAAATCAGTTCAAGACATTGGTTG
CTTTTGAAGTCGATGCTTCGTAAATGCTTTCATTCATCAAAAATGTATTG
GTGCTGGCCCTTTTCTTGATCCCCGTGGCATGTAACTACATTCCAG
back to top
Synonyms
Publications