jgi.p|Nanoce1779_2|592095, mRNA_5311 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592095
Unique Name	mRNA_5311
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2134
Alignment location	scaffold_13:138536..140801 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592181
Track	FilteredModels2
ProteinId	592095

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:138536..140801 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592095	gene_5311	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592095	mRNA_5311-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5311	CDS_5311	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:138536..140801+
coding sequence from alignment at scaffold_13:138536..140801+

mRNA sequence

>mRNA_5311 ID=mRNA_5311|Name=jgi.p|Nanoce1779_2|592095|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp
TGAAGGCGAGAGGAGAAACTGGAACACTCTTCTCTCTTCTTCTTGTTGCT
TCTGTGTATCAGGTGCTCCCTCATAAGCACCAACAAACAGCAGACATCCT
AACAGCTGATCGCACATTTTCTGGATTAATGACATGCCCACAGGCGAATT
CCTTCGCTTCTCGTCGGCACAGGTGCCTTGAGCCACAGCATCAGAACCTC
CCCACCTCCCTACCATCATGAGAGCGTTCTTCGCTAATTTATAATAAAAT
GAATTGAACGCATTAGGTTGAGAGTGTCCAACACTCTTTCACAGTCGTCT
GTATCCTTCTCATTTCATCAGTCATTTGAACCACACCAAGCCCAAGTTCT
TTCCCTCCCACCCTACTTGCCTTCGTCCCCTTCCTCTCACACTCTAGATT
TCAGCCGTCAACACTTCATCCTCCTCTTCTCTTCTAAACTCCTCTCCCTT
CAAGGGAAGGATACAAGAGCTGCTTGATTCTCCCTTGCTGCTCCCATGCA
GAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCACGACTT
CAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGCTGTTG
CAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCGCCCCT
GCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCTCTCCC
CCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCACGTGC
GCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTCACTTC
TCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAAGCAAA
AGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGCTTCAA
ACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCTCGCCA
GCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGCAACTGCCATGCAGCTCT
CCATCGTCCTTAGGATCCATCTTCCCTCACACACTTTGGCCTCCTCCTCC
ACCTTCTTTTCCTCCCCTTCCTCTTCTTCTTTCTCCTTTTCCACCTTTTA
TAACTCCTGGCTGTCCAAAATCCGGCAACAAACCTACTATTCCCGTACGC
GGCTTTTAGAAATTCTCATCACATATTACTGGGTGAAAATTACGGCTAAG
GACGCCCTCGTCTTCTTATCCTTTCTCGGTCTTTTCATACAATGCTGTCT
TGTGATTGGAGGGGTGATGTTAGCGTTGGTGCGGAGAACTAAGGAAGAGA
CCGAGGAGAACAAATCGCCTCATGGACAGGAAACGTGCACGTCATTGGCA
TCCTTCTTCTATTCTCCACTTACCCTTGCCTCGCAAAAATGCACCGCGCT
CACAACACATCCACGACGCGTCAGCAGCAACAACAGCAGCAGCAGCAACT
ACAGTCACAATAGACATCAACCTCCCTCCCTCACCGCCATCTCTAGCAAC
AAGAAGAGGGAAAGTAATATTACTGTTAGCAAACTCGCAGGAGACTCCTC
GTCATTCCTCTTCCTTGATGTACCGTTTTCGAGTCAATGGCAATGCGTGA
CGCACGATTGTCGGGCGGCGCCCACCCTTCTGCAAGACAGAGATTTAGAC
GCCGTGGCTGCTGCTGGTGGCTCTGGTAGAAAATTAAAGGGGAGGCACCA
TCAGGTGATTCCAACACCGAAGGAGGTAATGGCACGGCTATTTGCCGACG
ATCGAAAGGTTAAAGGTATGGTGTTGTCGGCCAAGTCTTGAGTTTAGTGT
GGTAGGGGTTAAGCCGAAGCGTGAGGGTATGTGTACATGTAGAGTGTGTA
TGTGTCTGTGAATAAGGAAGCAAGCGTATGAAGATAGGCAGGAGTCAAGT
CAGCAGCAACAACGACATGCAATGAAGATAGCAACTTAAGGAATATCTGC
TGGTGTACGTGGTCGTCATCGATAGCATGCGTGTGCTGTCGTCACCAATA
GTATGAGTATGGGACCATCATTGAAAGCATGTATATGGGGTCGTCATCGA
TGGCATGTGTACGTGGTTATCAATACAGGTTGCGTGGGAGCCATGTAAAA
TTATGTCAAATTCCAAAACCAAGAAGTAGATGCC

protein sequence of jgi.p|Nanoce1779_2|592095

>mRNA_5311-protein ID=mRNA_5311-protein|Name=jgi.p|Nanoce1779_2|592095|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MQNRVLPAALARLAASTTSATLLLVPASFLLLLLLQFFLPIVAADSTLFP
PLPLLNQNVLVQVSLLLSPSPTPIHPIPLDIRFTCASTSAAFTLNSTYTL
TSLFTSSLAHVDALSSKQKQAQPAWTFAADRHQLQTLQPCWVTAHTIDTP
RQRLGSKVVYPPATAMQLSIVLRIHLPSHTLASSSTFFSSPSSSSFSFST
FYNSWLSKIRQQTYYSRTRLLEILITYYWVKITAKDALVFLSFLGLFIQC
CLVIGGVMLALVRRTKEETEENKSPHGQETCTSLASFFYSPLTLASQKCT
ALTTHPRRVSSNNSSSSNYSHNRHQPPSLTAISSNKKRESNITVSKLAGD
SSSFLFLDVPFSSQWQCVTHDCRAAPTLLQDRDLDAVAAAGGSGRKLKGR
HHQVIPTPKEVMARLFADDRKVKGMVLSAKS*

mRNA from alignment at scaffold_13:138536..140801+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5311 ID=mRNA_5311|Name=jgi.p|Nanoce1779_2|592095|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp|location=Sequence derived from alignment at scaffold_13:138536..140801+ (Nannochloropsis oceanica)
TGAAGGCGAGAGGAGAAACTGGAACACTCTTCTCTCTTCTTCTTGTTGCT
TCTGTGTATCAGGTGCTCCCTCATAAGCACCAACAAACAGCAGACATCCT
AACAGCTGATCGCACATTTTCTGGATTAATGACATGCCCACAGGCGAATT
CCTTCGCTTCTCGTCGGCACAGGTGCCTTGAGCCACAGCATCAGAACCTC
CCCACCTCCCTACCATCATGAGAGCGTTCTTCGCTAATTTATAATAAAAT
GAATTGAACGCATTAGGTTGAGAGTGTCCAACACTCTTTCACAGTCGTCT
GTATCCTTCTCATTTCATCAGTCATTTGAACCACACCAAGCCCAAGTTCT
TTCCCTCCCACCCTACTTGCCTTCGTCCCCTTCCTCTCACACTCTAGATT
TCAGCCGTCAACACTTCATCCTCCTCTTCTCTTCTAAACTCCTCTCCCTT
CAAGGGAAGGATACAAGAGCTGCTTGATTCTCCCTTGCTGCTCCCATGCA
GAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCACGACTT
CAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGCTGTTG
CAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCGCCCCT
GCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCTCTCCC
CCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCACGTGC
GCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTCACTTC
TCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAAGCAAA
AGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGCTTCAA
ACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCTCGCCA
GCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGGTATGAAGCTACACAGAG
GGAAATACGCATATGCTTGATGGCAGGAAGGAAGAGGACCCATCAGCTGT
CGTTTGTCTAACCCCCTCCCTTCCTCACATTTTCCCTTCCATTCCCACCA
CGCACACACAACAGCAACTGCCATGCAGCTCTCCATCGTCCTTAGGATCC
ATCTTCCCTCACACACTTTGGCCTCCTCCTCCACCTTCTTTTCCTCCCCT
TCCTCTTCTTCTTTCTCCTTTTCCACCTTTTATAACTCCTGGCTGTCCAA
AATCCGGCAACAAACCTACTATTCCCGTACGCGGCTTTTAGAAATTCTCA
TCACATATTACTGGGTGAAAATTACGGCTAAGGACGCCCTCGTCTTCTTA
TCCTTTCTCGGTCTTTTCATACAATGCTGTCTTGTGATTGGAGGGGTGAT
GTTAGCGTTGGTGCGGAGAACTAAGGAAGAGACCGAGGAGAACAAATCGC
CTCATGGACAGGAAACGTGCACGTCATTGGCATCCTTCTTCTATTCTCCA
CTTACCCTTGCCTCGCAAAAATGCACCGCGCTCACAACACATCCACGACG
CGTCAGCAGCAACAACAGCAGCAGCAGCAACTACAGTCACAATAGACATC
AACCTCCCTCCCTCACCGCCATCTCTAGCAACAAGAAGAGGGAAAGTAAT
ATTACTGTTAGCAAACTCGCAGGAGACTCCTCGTCATTCCTCTTCCTTGA
TGTACCGTTTTCGAGTCAATGGCAATGCGTGACGCACGATTGTCGGGCGG
CGCCCACCCTTCTGCAAGACAGAGATTTAGACGCCGTGGCTGCTGCTGGT
GGCTCTGGTAGAAAATTAAAGGGGAGGCACCATCAGGTGATTCCAACACC
GAAGGAGGTAATGGCACGGCTATTTGCCGACGATCGAAAGGTTAAAGGTA
TGGTGTTGTCGGCCAAGTCTTGAGTTTAGTGTGGTAGGGGTTAAGCCGAA
GCGTGAGGGTATGTGTACATGTAGAGTGTGTATGTGTCTGTGAATAAGGA
AGCAAGCGTATGAAGATAGGCAGGAGTCAAGTCAGCAGCAACAACGACAT
GCAATGAAGATAGCAACTTAAGGAATATCTGCTGGTGTACGTGGTCGTCA
TCGATAGCATGCGTGTGCTGTCGTCACCAATAGTATGAGTATGGGACCAT
CATTGAAAGCATGTATATGGGGTCGTCATCGATGGCATGTGTACGTGGTT
ATCAATACAGGTTGCGTGGGAGCCATGTAAAATTATGTCAAATTCCAAAA
CCAAGAAGTAGATGCC

Coding sequence (CDS) from alignment at scaffold_13:138536..140801+

>mRNA_5311 ID=mRNA_5311|Name=jgi.p|Nanoce1779_2|592095|organism=Nannochloropsis oceanica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_13:138536..140801+ (Nannochloropsis oceanica)
ATGCAGAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCAC
GACTTCAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGC
TGTTGCAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCG
CCCCTGCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCT
CTCCCCCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCA
CGTGCGCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTC
ACTTCTCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAA
GCAAAAGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGC
TTCAAACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCT
CGCCAGCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGCAACTGCCATGCA
GCTCTCCATCGTCCTTAGGATCCATCTTCCCTCACACACTTTGGCCTCCT
CCTCCACCTTCTTTTCCTCCCCTTCCTCTTCTTCTTTCTCCTTTTCCACC
TTTTATAACTCCTGGCTGTCCAAAATCCGGCAACAAACCTACTATTCCCG
TACGCGGCTTTTAGAAATTCTCATCACATATTACTGGGTGAAAATTACGG
CTAAGGACGCCCTCGTCTTCTTATCCTTTCTCGGTCTTTTCATACAATGC
TGTCTTGTGATTGGAGGGGTGATGTTAGCGTTGGTGCGGAGAACTAAGGA
AGAGACCGAGGAGAACAAATCGCCTCATGGACAGGAAACGTGCACGTCAT
TGGCATCCTTCTTCTATTCTCCACTTACCCTTGCCTCGCAAAAATGCACC
GCGCTCACAACACATCCACGACGCGTCAGCAGCAACAACAGCAGCAGCAG
CAACTACAGTCACAATAGACATCAACCTCCCTCCCTCACCGCCATCTCTA
GCAACAAGAAGAGGGAAAGTAATATTACTGTTAGCAAACTCGCAGGAGAC
TCCTCGTCATTCCTCTTCCTTGATGTACCGTTTTCGAGTCAATGGCAATG
CGTGACGCACGATTGTCGGGCGGCGCCCACCCTTCTGCAAGACAGAGATT
TAGACGCCGTGGCTGCTGCTGGTGGCTCTGGTAGAAAATTAAAGGGGAGG
CACCATCAGGTGATTCCAACACCGAAGGAGGTAATGGCACGGCTATTTGC
CGACGATCGAAAGGTTAAAGGTATGGTGTTGTCGGCCAAGTCTTGAATGC
AGAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCACGACT
TCAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGCTGTT
GCAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCGCCCC
TGCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCTCTCC
CCCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCACGTG
CGCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTCACTT
CTCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAAGCAA
AAGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGCTTCA
AACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCTCGCC
AGCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGCAACTGCCATGCAGCTC
TCCATCGTCCTTAGGATCCATCTTCCCTCACACACTTTGGCCTCCTCCTC
CACCTTCTTTTCCTCCCCTTCCTCTTCTTCTTTCTCCTTTTCCACCTTTT
ATAACTCCTGGCTGTCCAAAATCCGGCAACAAACCTACTATTCCCGTACG
CGGCTTTTAGAAATTCTCATCACATATTACTGGGTGAAAATTACGGCTAA
GGACGCCCTCGTCTTCTTATCCTTTCTCGGTCTTTTCATACAATGCTGTC
TTGTGATTGGAGGGGTGATGTTAGCGTTGGTGCGGAGAACTAAGGAAGAG
ACCGAGGAGAACAAATCGCCTCATGGACAGGAAACGTGCACGTCATTGGC
ATCCTTCTTCTATTCTCCACTTACCCTTGCCTCGCAAAAATGCACCGCGC
TCACAACACATCCACGACGCGTCAGCAGCAACAACAGCAGCAGCAGCAAC
TACAGTCACAATAGACATCAACCTCCCTCCCTCACCGCCATCTCTAGCAA
CAAGAAGAGGGAAAGTAATATTACTGTTAGCAAACTCGCAGGAGACTCCT
CGTCATTCCTCTTCCTTGATGTACCGTTTTCGAGTCAATGGCAATGCGTG
ACGCACGATTGTCGGGCGGCGCCCACCCTTCTGCAAGACAGAGATTTAGA
CGCCGTGGCTGCTGCTGGTGGCTCTGGTAGAAAATTAAAGGGGAGGCACC
ATCAGGTGATTCCAACACCGAAGGAGGTAATGGCACGGCTATTTGCCGAC
GATCGAAAGGTTAAAGGTATGGTGTTGTCGGCCAAGTCTTGA

Synonyms

Publications