Properties
| Property Name | Value |
|---|
| TranscriptId | 592177 |
| Track | FilteredModels2 |
| ProteinId | 592091 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:136011..138452 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5310 ID=mRNA_5310|Name=jgi.p|Nanoce1779_2|592091|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp
AGCACAAGGCATCCATGCAGCAAAGAAGACACACCTCTGCCCAAGTGGCA
GCGCTGCTCGTCCTTCTCCTTGTTCCTACCACCCCGTTCCTCTTCAAGCC
TGCTCCATCCACTCACATGGCCCGCCAGCACAAACGTCCTCTGATAATGC
AATACGCAAATGATTTGGAAGGGGAAGGCGCAAAACCCACCACCACGATC
GAGATTCATCCTCCCCTCCCTGCTGCTGTCCAGGTGGAGGCAGAAGTGGA
AGCGGCAAGGTCCAAACACGCCCAGAGCATGACGCTCCTCCAGGATCTGC
GGCCAGGCATGCGTCTTCATGGTGGGGTGGTGGGTGTGACAGATTTTGCT
GCGTTCTTAGACGTGAAAGTGGTGCGAAAAGGACCCGGTGGGAAGCTGGT
CCGCTGCAACGCCATGCTCCATCCCCACGACGTGCCCCCCGGCACCACTC
TCATCCGTGACGCTCCCCCTGGCCAAGCCCGTCAACAGCAACCCACGCCT
CTCGAGACCGACCCCGCAGTCATCCGTCGCGGTATCCATGTCACCGTGTA
CGTCAAGGACGTTTTCCCCAACTCCGGGAGGTTCTCGGTCACGCTCGACC
CGACCGTGGACAAACAAAAGGTGGTGATCGCTCGAAGGCAGAAGCGAGAA
TTGAGCAAGAAGAGGAACAAGGTTAAAAAGCTGGAGGGGGTCGAGGAAGG
ATTGGAGAAGAAGGCGCAAGTTGTGAAGCTTTTGCGGACAGCCTTGCTGG
TCGATATTGGTCTACCCGTGCCAGCCTTTCTTCCACATAGCAGCATCCCA
GAATCGGTGCCCTTGGAGGTGCGTCTGTGTCTGTGTGGATTTGTGGATAT
CTGGGGGGGGGTGCTTGCTCGTCGTCGTGTTTCTGGCTGTTTTTTTTTTC
CTCCCGGGCATTTCACCAGGTATCATGATTTGACACCAAGAGTCGAATCA
GTGCACGACAGTTATATCCACATGCTTCATCATCATATTTGCACTTATTT
GGACAACGCGACTGACCTCCTGTCCCCCTTCCCTTTCCTTCCTCTTCCCC
TTTTTTCCTCCTGTTGCCCCCTCTCTCAAAAACAAAGGACGTGCGTCAAG
TAGGCGTATTAATGACAGTGCGTTTAAGCGAAAAGACGGACAAGCAAATC
AAATGTGAGATGATGAGGCTCTTACCCCCCACATCTACAGCGCCAGGCAG
GGTGGATGAGTGATGAGTGAAATAAGAAGTACCACATGTCACACAAAGGA
CGACGACGACGATGTTGTTTAGTGAAGATAACAAGGAAAAGGTGGTAGAA
AAAGCACACGCACGGTATCAAAATCGAAAGACAAGATACGTAAACCCTTA
AAGCAAGTGGAGAAGAAAAAGATATGAAGCCATGAACGAACAAACAAACA
CAAAAACAAAAACAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|592091 >mRNA_5310-protein ID=mRNA_5310-protein|Name=jgi.p|Nanoce1779_2|592091|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MQQRRHTSAQVAALLVLLLVPTTPFLFKPAPSTHMARQHKRPLIMQYAND
LEGEGAKPTTTIEIHPPLPAAVQVEAEVEAARSKHAQSMTLLQDLRPGMR
LHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDA
PPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDK
QKVVIARRQKRELSKKRNKVKKLEGVEEGLEKKAQVVKLLRTALLVDIGL
PVPAFLPHSSIPESVPLEVRLCLCGFVDIWGGVLARRRVSGCFFFPPGHF
TRYHDLTPRVESVHDSYIHMLHHHICTYLDNATDLLSPFPFLPLPLFSSC
CPLSQKQRTCVK* back to topmRNA from alignment at scaffold_13:136011..138452- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5310 ID=mRNA_5310|Name=jgi.p|Nanoce1779_2|592091|organism=Nannochloropsis oceanica|type=mRNA|length=2442bp|location=Sequence derived from alignment at scaffold_13:136011..138452- (Nannochloropsis oceanica)
AGCACAAGGCATCCATGCAGCAAAGAAGACACACCTCTGCCCAAGTGGCA
GCGCTGCTCGTCCTTCTCCTTGTTCCTACCACCCCGTTCCTCTTCAAGCC
TGCTCCATCCACTCACATGGCCCGCCAGCACAAACGTCCTCTGATAATGC
AATACGCAAATGATTTGGAAGGGGAAGGCGCAAAACCCACCACCACGATC
GAGATTCATCCTCCCCTCCCTGCTGCTGTCCAGGTGGAGGCAGAAGTGGA
AGCGGCAAGGTAAGAAGAGGACGAGGACAGTATCCATTCCGAATCGCGCA
CCAATATTTGTGTCTCTATCGGTGGCTAGCATGAGCAGGTGGTTCAGCCC
TTCTCCCGTATCATTACCTCTGGCCCCCTCCTTCACCAGCCGCAGCAGGC
TTGAGCATCGGCCCCGTTCACTCCCATCTTATCTTATGACTCGAAAGCAT
AGGCCACTCCTGATACATACTCCTCATGACCAACCCTCCATTCCTCATTA
CTACCCTTTATTCCAGGTCCAAACACGCCCAGAGCATGACGCTCCTCCAG
GATCTGCGGCCAGGCATGCGTCTTCATGGTGGGGTGGTGGGTGTGACAGA
TTTTGCTGCGTTCTTAGACGTGAAAGTGGTGCGAAAAGGACCCGGTGGGA
AGGTGAGTGCTGCAGTGCATCGGCTATGGAAAAGGAGATAGGGGAACGGA
AAATGAAGGAAGGAGGGGGAAAAGAGACAATTGTGTAGAGTAGGCATGCT
GGATTATGCAGCTTTTTTTGTGGTGGAGGGTGTGCGGCATGGGCCAGGAG
GGAAGCAGAGCGTCGATACAAAGAGAAGGAAGAAATGGAGAAAAGAGAGG
AAAGGGGTATGAGAATGTCCATGAGCGAAGCACCCGCGCTACAGACAATG
CATGCAATGGATGCATGCAGTCTGGCCCGCAGGTTACCAATGCCGTCAGT
CGCTCAACCTGCGGTCGTATCAACGCCAGACTCTCATCCAATTAATTAAA
GGCGGGCCTTTCTGCAAGCTCGAGGCGTGCAGCTACAACGCCATCCGCCT
GCACCATCCCTTTTCCGCTTTTTCCCTCTCTCCACGTTTGGGCCTGTAAC
AGATGGTATTATTTAAAGCCGTGCGTTTACCTCTTCACCCCCCATCCTCC
CTCCCACCCTCCCTCCCCTCCCTGCAGCTGGTCCGCTGCAACGCCATGCT
CCATCCCCACGACGTGCCCCCCGGCACCACTCTCATCCGTGACGCTCCCC
CTGGCCAAGCCCGTCAACAGCAACCCACGCCTCTCGAGACCGACCCCGCA
GTCATCCGTCGCGGTATCCATGTCACCGTGTACGTCAAGGACGTTTTCCC
CAACTCCGGGAGGTTCTCGGTCACGCTCGACCCGACCGTGGACAAACAAA
AGGTGGTGATCGCTCGAAGGCAGAAGCGAGAATTGAGCAAGAAGAGGAAC
AAGGTTAAAAAGCTGGAGGGGGTCGAGGAAGGATTGGAGAAGAAGGCGCA
AGTTGTGAAGGTATGTGGTTGAGAGGGAGGAAGGGAAGGAGGGAGGGGCA
CGTTATGGCTTGGTTAAAAGGGGGCTGTGATGTTATTAGACGAGAACAGC
AATATGTCAAAGAATATAGGGGATAGGGACGGAGGGAGGGGTGAAGGGAC
GGAGGAGGGAATCGAATTTCTCTATTTTCCAATTTGTAGAAGTCCACAAT
TTCTTCCATTCGTTTTCACCTTTTTGTTGACACGCAACACCAACACCGCA
CAGCTTTTGCGGACAGCCTTGCTGGTCGATATTGGTCTACCCGTGCCAGC
CTTTCTTCCACATAGCAGCATCCCAGAATCGGTGCCCTTGGAGGTGCGTC
TGTGTCTGTGTGGATTTGTGGATATCTGGGGGGGGGTGCTTGCTCGTCGT
CGTGTTTCTGGCTGTTTTTTTTTTCCTCCCGGGCATTTCACCAGGTATCA
TGATTTGACACCAAGAGTCGAATCAGTGCACGACAGTTATATCCACATGC
TTCATCATCATATTTGCACTTATTTGGACAACGCGACTGACCTCCTGTCC
CCCTTCCCTTTCCTTCCTCTTCCCCTTTTTTCCTCCTGTTGCCCCCTCTC
TCAAAAACAAAGGACGTGCGTCAAGTAGGCGTATTAATGACAGTGCGTTT
AAGCGAAAAGACGGACAAGCAAATCAAATGTGAGATGATGAGGCTCTTAC
CCCCCACATCTACAGCGCCAGGCAGGGTGGATGAGTGATGAGTGAAATAA
GAAGTACCACATGTCACACAAAGGACGACGACGACGATGTTGTTTAGTGA
AGATAACAAGGAAAAGGTGGTAGAAAAAGCACACGCACGGTATCAAAATC
GAAAGACAAGATACGTAAACCCTTAAAGCAAGTGGAGAAGAAAAAGATAT
GAAGCCATGAACGAACAAACAAACACAAAAACAAAAACAAAA back to topCoding sequence (CDS) from alignment at scaffold_13:136011..138452- >mRNA_5310 ID=mRNA_5310|Name=jgi.p|Nanoce1779_2|592091|organism=Nannochloropsis oceanica|type=CDS|length=4356bp|location=Sequence derived from alignment at scaffold_13:136011..138452- (Nannochloropsis oceanica)
CTTTTGCGGACAGCCTTGCTGGTCGATATTGGTCTACCCGTGCCAGCCTT
TCTTCCACATAGCAGCATCCCAGAATCGGTGCCCTTGGAGGTGCGTCTGT
GTCTGTGTGGATTTGTGGATATCTGGGGGGGGGTGCTTGCTCGTCGTCGT
GTTTCTGGCTGTTTTTTTTTTCCTCCCGGGCATTTCACCAGGTATCATGA
TTTGACACCAAGAGTCGAATCAGTGCACGACAGTTATATCCACATGCTTC
ATCATCATATTTGCACTTATTTGGACAACGCGACTGACCTCCTGTCCCCC
TTCCCTTTCCTTCCTCTTCCCCTTTTTTCCTCCTGTTGCCCCCTCTCTCA
AAAACAAAGGACGTGCGTCAAGTAGCTGGTCCGCTGCAACGCCATGCTCC
ATCCCCACGACGTGCCCCCCGGCACCACTCTCATCCGTGACGCTCCCCCT
GGCCAAGCCCGTCAACAGCAACCCACGCCTCTCGAGACCGACCCCGCAGT
CATCCGTCGCGGTATCCATGTCACCGTGTACGTCAAGGACGTTTTCCCCA
ACTCCGGGAGGTTCTCGGTCACGCTCGACCCGACCGTGGACAAACAAAAG
GTGGTGATCGCTCGAAGGCAGAAGCGAGAATTGAGCAAGAAGAGGAACAA
GGTTAAAAAGCTGGAGGGGGTCGAGGAAGGATTGGAGAAGAAGGCGCAAG
TTGTGAAGGTCCAAACACGCCCAGAGCATGACGCTCCTCCAGGATCTGCG
GCCAGGCATGCGTCTTCATGGTGGGGTGGTGGGTGTGACAGATTTTGCTG
CGTTCTTAGACGTGAAAGTGGTGCGAAAAGGACCCGGTGGGAAGATGCAG
CAAAGAAGACACACCTCTGCCCAAGTGGCAGCGCTGCTCGTCCTTCTCCT
TGTTCCTACCACCCCGTTCCTCTTCAAGCCTGCTCCATCCACTCACATGG
CCCGCCAGCACAAACGTCCTCTGATAATGCAATACGCAAATGATTTGGAA
GGGGAAGGCGCAAAACCCACCACCACGATCGAGATTCATCCTCCCCTCCC
TGCTGCTGTCCAGGTGGAGGCAGAAGTGGAAGCGGCAAGCTTTTGCGGAC
AGCCTTGCTGGTCGATATTGGTCTACCCGTGCCAGCCTTTCTTCCACATA
GCAGCATCCCAGAATCGGTGCCCTTGGAGGTGCGTCTGTGTCTGTGTGGA
TTTGTGGATATCTGGGGGGGGGTGCTTGCTCGTCGTCGTGTTTCTGGCTG
TTTTTTTTTTCCTCCCGGGCATTTCACCAGGTATCATGATTTGACACCAA
GAGTCGAATCAGTGCACGACAGTTATATCCACATGCTTCATCATCATATT
TGCACTTATTTGGACAACGCGACTGACCTCCTGTCCCCCTTCCCTTTCCT
TCCTCTTCCCCTTTTTTCCTCCTGTTGCCCCCTCTCTCAAAAACAAAGGA
CGTGCGTCAAGTAGCTGGTCCGCTGCAACGCCATGCTCCATCCCCACGAC
GTGCCCCCCGGCACCACTCTCATCCGTGACGCTCCCCCTGGCCAAGCCCG
TCAACAGCAACCCACGCCTCTCGAGACCGACCCCGCAGTCATCCGTCGCG
GTATCCATGTCACCGTGTACGTCAAGGACGTTTTCCCCAACTCCGGGAGG
TTCTCGGTCACGCTCGACCCGACCGTGGACAAACAAAAGGTGGTGATCGC
TCGAAGGCAGAAGCGAGAATTGAGCAAGAAGAGGAACAAGGTTAAAAAGC
TGGAGGGGGTCGAGGAAGGATTGGAGAAGAAGGCGCAAGTTGTGAAGGTC
CAAACACGCCCAGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGC
GTCTTCATGGTGGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGAC
GTGAAAGTGGTGCGAAAAGGACCCGGTGGGAAGATGCAGCAAAGAAGACA
CACCTCTGCCCAAGTGGCAGCGCTGCTCGTCCTTCTCCTTGTTCCTACCA
CCCCGTTCCTCTTCAAGCCTGCTCCATCCACTCACATGGCCCGCCAGCAC
AAACGTCCTCTGATAATGCAATACGCAAATGATTTGGAAGGGGAAGGCGC
AAAACCCACCACCACGATCGAGATTCATCCTCCCCTCCCTGCTGCTGTCC
AGGTGGAGGCAGAAGTGGAAGCGGCAAGCTTTTGCGGACAGCCTTGCTGG
TCGATATTGGTCTACCCGTGCCAGCCTTTCTTCCACATAGCAGCATCCCA
GAATCGGTGCCCTTGGAGGTGCGTCTGTGTCTGTGTGGATTTGTGGATAT
CTGGGGGGGGGTGCTTGCTCGTCGTCGTGTTTCTGGCTGTTTTTTTTTTC
CTCCCGGGCATTTCACCAGGTATCATGATTTGACACCAAGAGTCGAATCA
GTGCACGACAGTTATATCCACATGCTTCATCATCATATTTGCACTTATTT
GGACAACGCGACTGACCTCCTGTCCCCCTTCCCTTTCCTTCCTCTTCCCC
TTTTTTCCTCCTGTTGCCCCCTCTCTCAAAAACAAAGGACGTGCGTCAAG
TAGCTGGTCCGCTGCAACGCCATGCTCCATCCCCACGACGTGCCCCCCGG
CACCACTCTCATCCGTGACGCTCCCCCTGGCCAAGCCCGTCAACAGCAAC
CCACGCCTCTCGAGACCGACCCCGCAGTCATCCGTCGCGGTATCCATGTC
ACCGTGTACGTCAAGGACGTTTTCCCCAACTCCGGGAGGTTCTCGGTCAC
GCTCGACCCGACCGTGGACAAACAAAAGGTGGTGATCGCTCGAAGGCAGA
AGCGAGAATTGAGCAAGAAGAGGAACAAGGTTAAAAAGCTGGAGGGGGTC
GAGGAAGGATTGGAGAAGAAGGCGCAAGTTGTGAAGGTCCAAACACGCCC
AGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTCATGGT
GGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGACGTGAAAGTGGT
GCGAAAAGGACCCGGTGGGAAGATGCAGCAAAGAAGACACACCTCTGCCC
AAGTGGCAGCGCTGCTCGTCCTTCTCCTTGTTCCTACCACCCCGTTCCTC
TTCAAGCCTGCTCCATCCACTCACATGGCCCGCCAGCACAAACGTCCTCT
GATAATGCAATACGCAAATGATTTGGAAGGGGAAGGCGCAAAACCCACCA
CCACGATCGAGATTCATCCTCCCCTCCCTGCTGCTGTCCAGGTGGAGGCA
GAAGTGGAAGCGGCAAGCTTTTGCGGACAGCCTTGCTGGTCGATATTGGT
CTACCCGTGCCAGCCTTTCTTCCACATAGCAGCATCCCAGAATCGGTGCC
CTTGGAGGTGCGTCTGTGTCTGTGTGGATTTGTGGATATCTGGGGGGGGG
TGCTTGCTCGTCGTCGTGTTTCTGGCTGTTTTTTTTTTCCTCCCGGGCAT
TTCACCAGGTATCATGATTTGACACCAAGAGTCGAATCAGTGCACGACAG
TTATATCCACATGCTTCATCATCATATTTGCACTTATTTGGACAACGCGA
CTGACCTCCTGTCCCCCTTCCCTTTCCTTCCTCTTCCCCTTTTTTCCTCC
TGTTGCCCCCTCTCTCAAAAACAAAGGACGTGCGTCAAGTAGCTGGTCCG
CTGCAACGCCATGCTCCATCCCCACGACGTGCCCCCCGGCACCACTCTCA
TCCGTGACGCTCCCCCTGGCCAAGCCCGTCAACAGCAACCCACGCCTCTC
GAGACCGACCCCGCAGTCATCCGTCGCGGTATCCATGTCACCGTGTACGT
CAAGGACGTTTTCCCCAACTCCGGGAGGTTCTCGGTCACGCTCGACCCGA
CCGTGGACAAACAAAAGGTGGTGATCGCTCGAAGGCAGAAGCGAGAATTG
AGCAAGAAGAGGAACAAGGTTAAAAAGCTGGAGGGGGTCGAGGAAGGATT
GGAGAAGAAGGCGCAAGTTGTGAAGGTCCAAACACGCCCAGAGCATGACG
CTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTCATGGTGGGGTGGTGGG
TGTGACAGATTTTGCTGCGTTCTTAGACGTGAAAGTGGTGCGAAAAGGAC
CCGGTGGGAAGATGCAGCAAAGAAGACACACCTCTGCCCAAGTGGCAGCG
CTGCTCGTCCTTCTCCTTGTTCCTACCACCCCGTTCCTCTTCAAGCCTGC
TCCATCCACTCACATGGCCCGCCAGCACAAACGTCCTCTGATAATGCAAT
ACGCAAATGATTTGGAAGGGGAAGGCGCAAAACCCACCACCACGATCGAG
ATTCATCCTCCCCTCCCTGCTGCTGTCCAGGTGGAGGCAGAAGTGGAAGC
GGCAAG back to top
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