|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 577690 |
| Track | FilteredModels2 |
| ProteinId | 577604 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1286280..1288552 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_531 ID=mRNA_531|Name=jgi.p|Nanoce1779_2|577604|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp
ACAGAAAAGAGCAGCATGCTGCGCCTTCGTCAACAGGCTGGGCGTCGGCT
GGTGGCCGCGGCAACGGGGAGTACGGCCACGCGTGCAGTTTCGTCCTCGG
CCGCAACCCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCCAGCCCAAAG
GGGAACATCAAGTTCTTCAAGGTCTACCGCTGGGACCCGGAGCAGAACCA
AAAGCCCTACCTATCTACCTATCCAGTCGACCTCGATGACTGTGGACCCA
TGGTCCTGGATGCACTCTTCAAAATCAAGAACGAGCAAGACCCTTCGCTT
ACCTTCCGCCGATCCTGCCGAGAGGGCATCTGTGGGTCATGCGCGATGAA
TATTGACGGCACCAACACGTTGGCCTGCCTATCGTACATTAACAAGGGAC
CGGAGCCATGTAAGATTTACCCCTTGCCGCACATGTATGTCCTCAAGGAC
CTGGTACCGGACATGACGAATTTCTATGCGCAGTACAAGAGCATCGAGCC
ATGGCTCAAGGTGAAGGCCCCTGAGTCCAAGGACCCCAACAAGGAGCACC
TGCAGAGCAAGGAAGACAGAAAGAAGCTCGACGGCATGTACGAGTGCATC
CTCTGCGCGTGCTGCTCCACCGCCTGCCCGTCGTACTGGTGGGCAGCCGA
CAAGTACCTGGGACCCGCGGTGTTGATGCAGGCCTATCGCTGGATCGAGG
ACTCGCGCGACGAATTCACTCGGGAGCGCCTGGAGGCCTTGGATGACTCG
TTCAAGCTCTATCGGTGCCACACTATCATGAACTGCACCAAGGTGTGTCC
TAAGCATCTGAATCCCGGCCGGGCCATCGCCCACATTAAGAAGCGATTGG
CGGCAGTGCACTAGAGGGGGGCAGACAAGGTGGGAGGAAAAAGGATTATA
TCATAATATGAAAAAAGAGTCGTAATACTATGAAAAAAAGGGAAGTTGGG
AAGGACCAGAGAGGGAGGTATGACAAAAGTTTTGTGCAGCGACACGGATG
TTGTTGCTTGAGCGAGGATTAGAGAGGGAGGATGAGAGAGAGCAGGGGGA
CTGCGCGGGAGTAGAAGCACATGCCCTCCATGCCCTCGAATGAGATGATC
GAAGGGGGAAAGTGAGGAAGGATCGATAACGACGAAGATGACGATCACGA
ACTACTATGACGGACATGACCTCGGGGAGCCCACGGGCCCACAAGCGCAA
GGAAGGGACTCCTTTCAGAGGCAATTAACATATTGTTTCTCATCTATCCG
TGATAGACTCAGTTTTGGAGAGTGTACATCGTTGATCGTGTTTCGGTGTT
CATCAACTGCTTTCTTTGTTTCTTTCTTTCCGTCCCTCTCCTTCCATCGC
AGGGACAGAGCGGAGACACACATAACAAATTATTACTATGAAGTCAAAGA
CACCGCCTGCCTCTTTTCTTTGGCCGTTTTGTTCGCCCCTCCCTCCCTCC
CTCCTTGACTCACTTCTGTAATTTAAT back to topprotein sequence of jgi.p|Nanoce1779_2|577604 >mRNA_531-protein ID=mRNA_531-protein|Name=jgi.p|Nanoce1779_2|577604|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MLRLRQQAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKF
FKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRS
CREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDM
TNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACC
STACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYR
CHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH* back to topmRNA from alignment at scaffold_3:1286280..1288552- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_531 ID=mRNA_531|Name=jgi.p|Nanoce1779_2|577604|organism=Nannochloropsis oceanica|type=mRNA|length=2273bp|location=Sequence derived from alignment at scaffold_3:1286280..1288552- (Nannochloropsis oceanica)
ACAGAAAAGAGCAGCATGCTGCGCCTTCGTCAACAGGCTGGGCGTCGGCT
GGTGGCCGCGGCAACGGGGAGTACGGCCACGCGTGCAGTTTCGTCCTCGG
CCGCAACCCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCCAGCCCAAAG
GGGGTACGTTGAAGTGGAGGGAGGGAGAGAGGGAGGGAGGGAGGAAGGTT
TGGAAGGAGAGAGGAACACTCAAGGATGAAAGCACGAGGGAGGGGGAAGT
TGTGGGGATGTCTCTGGTGTGGCTCACAAGGGCCTTCGTGGTGCACGTCT
AGAAAGGAGAGATTGTAGAGCAGAGAGAGAACAGTCGCGACATATTGTCT
GATATCGCTCCATTCCACGCACACACACACACGCTCATACACATGCAGAA
CATCAAGTTCTTCAAGGTCTACCGCTGGGACCCGGAGCAGAACCAAAAGC
CCTACCTATCTACCTATCCAGTCGACCTCGATGAGTAAGTGGAGATGCCC
CATGCCACCTCCCTCACTCCCTCCCTCCCTCACTCCCTAGCTTGATCCAC
CATTCCCTCCCTCCTTCCCTTCCTATTCTCATGCAAGATGTCTGGTGCCA
ATCCGCTCGTTGGGTCCTTGAACCCTTTCAAAGGCATCTTCACATCTCAC
CCCTCCCTCCCTCCCTTTCTCCCTCCCTCCCTTTCTCCCTCCCTTTCTCC
CTCCCTTCCTCCCTCCCTCAGCTGTGGACCCATGGTCCTGGATGCACTCT
TCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTCCGCCGATCCTGC
CGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGACGGCACCAACAC
GTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGCCATGTAAGATTT
ACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTACCGGACATGACG
AATTTCTATGCGCAGTACAAGGTGAGCGCGAGGAAGGGAGGGAGGGAGGG
TGGGATGCTTGGCCGACTGGTTTACTCCACCCGCGGGAGCGCTCATTCTT
ACCCTCATTTCCTTCCTCTGTCCCTCCCTCAGAGCATCGAGCCATGGCTC
AAGGTGAAGGCCCCTGAGTCCAAGGACCCCAACAAGGAGCACCTGCAGAG
CAAGGAAGACAGAAAGAAGCTCGACGGCATGTACGAGTGCATCCTCTGCG
CGTGCTGCTCCACCGCCTGCCCGTCGTACTGGTGGGCAGCCGACAAGTAC
CTGGGACCCGCGGTGTTGATGCAGGCCTATCGCTGGATCGAGGACTCGCG
CGACGAATTCACTCGGGAGCGCCTGGAGGCCTTGGATGACTCGTTCAAGG
TACTTTCAGCCTCCTCCCCTCCTCTCTTTCCCGCCCATTCCTCTTTACGT
CTAGCGTCATCTCCTCTTGTCCTCTCTCCTTTTCCTCCTTTTCTCCGCCT
GTATCATCAAACCTCCGATTCCTATCCTCCGTTCCATAAATCTCACCTTT
ACTCATTCTGCCCTAACTCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCC
AGCTCTATCGGTGCCACACTATCATGAACTGCACCAAGGTGTGTCCTAAG
CATCTGAATCCCGGCCGGGCCATCGCCCACATTAAGAAGCGATTGGCGGC
AGTGCACTAGAGGGGGGCAGACAAGGTGGGAGGAAAAAGGATTATATCAT
AATATGAAAAAAGAGTCGTAATACTATGAAAAAAAGGGAAGTTGGGAAGG
ACCAGAGAGGGAGGTATGACAAAAGTTTTGTGCAGCGACACGGATGTTGT
TGCTTGAGCGAGGATTAGAGAGGGAGGATGAGAGAGAGCAGGGGGACTGC
GCGGGAGTAGAAGCACATGCCCTCCATGCCCTCGAATGAGATGATCGAAG
GGGGAAAGTGAGGAAGGATCGATAACGACGAAGATGACGATCACGAACTA
CTATGACGGACATGACCTCGGGGAGCCCACGGGCCCACAAGCGCAAGGAA
GGGACTCCTTTCAGAGGCAATTAACATATTGTTTCTCATCTATCCGTGAT
AGACTCAGTTTTGGAGAGTGTACATCGTTGATCGTGTTTCGGTGTTCATC
AACTGCTTTCTTTGTTTCTTTCTTTCCGTCCCTCTCCTTCCATCGCAGGG
ACAGAGCGGAGACACACATAACAAATTATTACTATGAAGTCAAAGACACC
GCCTGCCTCTTTTCTTTGGCCGTTTTGTTCGCCCCTCCCTCCCTCCCTCC
TTGACTCACTTCTGTAATTTAAT back to topCoding sequence (CDS) from alignment at scaffold_3:1286280..1288552- >mRNA_531 ID=mRNA_531|Name=jgi.p|Nanoce1779_2|577604|organism=Nannochloropsis oceanica|type=CDS|length=4245bp|location=Sequence derived from alignment at scaffold_3:1286280..1288552- (Nannochloropsis oceanica)
CTCTATCGGTGCCACACTATCATGAACTGCACCAAGGTGTGTCCTAAGCA
TCTGAATCCCGGCCGGGCCATCGCCCACATTAAGAAGCGATTGGCGGCAG
TGCACTAGAGCATCGAGCCATGGCTCAAGGTGAAGGCCCCTGAGTCCAAG
GACCCCAACAAGGAGCACCTGCAGAGCAAGGAAGACAGAAAGAAGCTCGA
CGGCATGTACGAGTGCATCCTCTGCGCGTGCTGCTCCACCGCCTGCCCGT
CGTACTGGTGGGCAGCCGACAAGTACCTGGGACCCGCGGTGTTGATGCAG
GCCTATCGCTGGATCGAGGACTCGCGCGACGAATTCACTCGGGAGCGCCT
GGAGGCCTTGGATGACTCGTTCAAGCTGTGGACCCATGGTCCTGGATGCA
CTCTTCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTCCGCCGATC
CTGCCGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGACGGCACCA
ACACGTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGCCATGTAAG
ATTTACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTACCGGACAT
GACGAATTTCTATGCGCAGTACAAGAACATCAAGTTCTTCAAGGTCTACC
GCTGGGACCCGGAGCAGAACCAAAAGCCCTACCTATCTACCTATCCAGTC
GACCTCGATGAATGCTGCGCCTTCGTCAACAGGCTGGGCGTCGGCTGGTG
GCCGCGGCAACGGGGAGTACGGCCACGCGTGCAGTTTCGTCCTCGGCCGC
AACCCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCCAGCCCAAAGGGGC
TCTATCGGTGCCACACTATCATGAACTGCACCAAGGTGTGTCCTAAGCAT
CTGAATCCCGGCCGGGCCATCGCCCACATTAAGAAGCGATTGGCGGCAGT
GCACTAGAGCATCGAGCCATGGCTCAAGGTGAAGGCCCCTGAGTCCAAGG
ACCCCAACAAGGAGCACCTGCAGAGCAAGGAAGACAGAAAGAAGCTCGAC
GGCATGTACGAGTGCATCCTCTGCGCGTGCTGCTCCACCGCCTGCCCGTC
GTACTGGTGGGCAGCCGACAAGTACCTGGGACCCGCGGTGTTGATGCAGG
CCTATCGCTGGATCGAGGACTCGCGCGACGAATTCACTCGGGAGCGCCTG
GAGGCCTTGGATGACTCGTTCAAGCTGTGGACCCATGGTCCTGGATGCAC
TCTTCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTCCGCCGATCC
TGCCGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGACGGCACCAA
CACGTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGCCATGTAAGA
TTTACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTACCGGACATG
ACGAATTTCTATGCGCAGTACAAGAACATCAAGTTCTTCAAGGTCTACCG
CTGGGACCCGGAGCAGAACCAAAAGCCCTACCTATCTACCTATCCAGTCG
ACCTCGATGAATGCTGCGCCTTCGTCAACAGGCTGGGCGTCGGCTGGTGG
CCGCGGCAACGGGGAGTACGGCCACGCGTGCAGTTTCGTCCTCGGCCGCA
ACCCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCCAGCCCAAAGGGGCT
CTATCGGTGCCACACTATCATGAACTGCACCAAGGTGTGTCCTAAGCATC
TGAATCCCGGCCGGGCCATCGCCCACATTAAGAAGCGATTGGCGGCAGTG
CACTAGAGCATCGAGCCATGGCTCAAGGTGAAGGCCCCTGAGTCCAAGGA
CCCCAACAAGGAGCACCTGCAGAGCAAGGAAGACAGAAAGAAGCTCGACG
GCATGTACGAGTGCATCCTCTGCGCGTGCTGCTCCACCGCCTGCCCGTCG
TACTGGTGGGCAGCCGACAAGTACCTGGGACCCGCGGTGTTGATGCAGGC
CTATCGCTGGATCGAGGACTCGCGCGACGAATTCACTCGGGAGCGCCTGG
AGGCCTTGGATGACTCGTTCAAGCTGTGGACCCATGGTCCTGGATGCACT
CTTCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTCCGCCGATCCT
GCCGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGACGGCACCAAC
ACGTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGCCATGTAAGAT
TTACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTACCGGACATGA
CGAATTTCTATGCGCAGTACAAGAACATCAAGTTCTTCAAGGTCTACCGC
TGGGACCCGGAGCAGAACCAAAAGCCCTACCTATCTACCTATCCAGTCGA
CCTCGATGAATGCTGCGCCTTCGTCAACAGGCTGGGCGTCGGCTGGTGGC
CGCGGCAACGGGGAGTACGGCCACGCGTGCAGTTTCGTCCTCGGCCGCAA
CCCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCCAGCCCAAAGGGGCTC
TATCGGTGCCACACTATCATGAACTGCACCAAGGTGTGTCCTAAGCATCT
GAATCCCGGCCGGGCCATCGCCCACATTAAGAAGCGATTGGCGGCAGTGC
ACTAGAGCATCGAGCCATGGCTCAAGGTGAAGGCCCCTGAGTCCAAGGAC
CCCAACAAGGAGCACCTGCAGAGCAAGGAAGACAGAAAGAAGCTCGACGG
CATGTACGAGTGCATCCTCTGCGCGTGCTGCTCCACCGCCTGCCCGTCGT
ACTGGTGGGCAGCCGACAAGTACCTGGGACCCGCGGTGTTGATGCAGGCC
TATCGCTGGATCGAGGACTCGCGCGACGAATTCACTCGGGAGCGCCTGGA
GGCCTTGGATGACTCGTTCAAGCTGTGGACCCATGGTCCTGGATGCACTC
TTCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTCCGCCGATCCTG
CCGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGACGGCACCAACA
CGTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGCCATGTAAGATT
TACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTACCGGACATGAC
GAATTTCTATGCGCAGTACAAGAACATCAAGTTCTTCAAGGTCTACCGCT
GGGACCCGGAGCAGAACCAAAAGCCCTACCTATCTACCTATCCAGTCGAC
CTCGATGAATGCTGCGCCTTCGTCAACAGGCTGGGCGTCGGCTGGTGGCC
GCGGCAACGGGGAGTACGGCCACGCGTGCAGTTTCGTCCTCGGCCGCAAC
CCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCCAGCCCAAAGGGGCTCT
ATCGGTGCCACACTATCATGAACTGCACCAAGGTGTGTCCTAAGCATCTG
AATCCCGGCCGGGCCATCGCCCACATTAAGAAGCGATTGGCGGCAGTGCA
CTAGAGCATCGAGCCATGGCTCAAGGTGAAGGCCCCTGAGTCCAAGGACC
CCAACAAGGAGCACCTGCAGAGCAAGGAAGACAGAAAGAAGCTCGACGGC
ATGTACGAGTGCATCCTCTGCGCGTGCTGCTCCACCGCCTGCCCGTCGTA
CTGGTGGGCAGCCGACAAGTACCTGGGACCCGCGGTGTTGATGCAGGCCT
ATCGCTGGATCGAGGACTCGCGCGACGAATTCACTCGGGAGCGCCTGGAG
GCCTTGGATGACTCGTTCAAGCTGTGGACCCATGGTCCTGGATGCACTCT
TCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTCCGCCGATCCTGC
CGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGACGGCACCAACAC
GTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGCCATGTAAGATTT
ACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTACCGGACATGACG
AATTTCTATGCGCAGTACAAGAACATCAAGTTCTTCAAGGTCTACCGCTG
GGACCCGGAGCAGAACCAAAAGCCCTACCTATCTACCTATCCAGTCGACC
TCGATGAATGCTGCGCCTTCGTCAACAGGCTGGGCGTCGGCTGGTGGCCG
CGGCAACGGGGAGTACGGCCACGCGTGCAGTTTCGTCCTCGGCCGCAACC
CCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCCAGCCCAAAGGGG back to top
|