jgi.p|Nanoce1779_2|592084, mRNA_5308 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592084
Unique NamemRNA_5308
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1557
Alignment locationscaffold_13:132054..133755 -

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Properties
Property NameValue
TranscriptId592170
TrackFilteredModels2
ProteinId592084
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:132054..133755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592084gene_5308Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592084mRNA_5308-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5308CDS_5308Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5308 ID=mRNA_5308|Name=jgi.p|Nanoce1779_2|592084|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
CAGGCCAGTAACGCTCTCGCCAACCGAGACTTCTCTTGCCTTCTTTCGCG
TGGCCGGGGCACCGTGGCTCTCTTCCCTTCCACATCACATCCGCACCCTT
GCCTCATAGTCACAGAGTCAAGCAAGATGAAGCTGATGGTGAGGGACGTG
GGGACTAAGAGGATGGTGGTCGAGGTCGAACCTTCCCTAAAGATAGGTGA
ATTGAAAACCAAGCTCCAAGCCGAGCACAGTGTTGCTGATCCTGCACGCC
AGAAGATGATTTACAAGGGAAAGGTATTGAAGGACGCCGACACCATCGAG
TCCACGGGTGTGACGGAGGCCGACTTCTACGTCTGCATGGTCTCGGCGCC
GCCCAAGCCCAAGCCGACTGTGGTCGCCGCGCCAGCCCCTGCCCAGACAG
CGGCCACGGCTGCTTCGACTGCGGATGCCACGGCGGCTACAGCCACTACA
GCAGCCGCGTCGCCCGCTGCTCCACCCGCTGCGCCTGCATCCGTGGACCC
TGATCAAGTGGAGGGTCTGATTTCGATGGGTTTTGCAGAGGCACATGTCC
GTGCCGCGTTGGAAGCGACGGGTGGCAACCCAGATGCGGCCTACACGCTG
TTGGAGAGCGGGGGCCCCATCCAACCACCTGCCCCTCCCGCTACGGCTGG
TAGTGCCGCTCCTACTGCTAGCGGTGCTCCAGGGGCGATTATGTCTCTGG
AAGATCTCCGAGCGTCGCCGCAATTTGATCAGCTTCGTCGCATGGTTCAG
AGTAATCCGAATGCGATTGACCAGGTGTTGGCGGTCATTGGGCAGCAGAG
CCCGCAGCTCTTTCAGGTCATTTTGGCGCAACAAGACGCGTTTATTGCAA
TGATGAACGAACCAATCGAAGGCACAGAAGCAGTGGGAGCGGGAGCGGGT
GCGGGTGCCGCAGGTGCTGGAGCGGGAGGGGCGACGCAAGCGCAAGTGAA
TCCGTTTGCGGGCCTCGGAGCTATGGGGATGAGAGGGATGGAAGGAATGG
GGGGCGAAAACGGGCCGTCCCCGCAGCAGCTTGCGCAGATGTTGCAGTCC
ATGCCTGAGGCTCAGAGGAACCAACTTTTGTCCACGCTTGTGGGGCTGCC
GCTTGAGCAAGTGGAACAGTTTAGTGGTCAGCTGATCCAGGCGTTGGCGA
GCGGGACGGCGCCGGGCATGCCGGGGGCGGGGGGAGGAGCGATGCCCCCC
GGGGCGCAGCGAATTGAGTTGACCGCAGAAGAGGCAGCGAATTTGAACCA
GTTGGTGGAGATGGGATTTGAACGGAATGAGGCATTGCAGGTGTTTTTGG
CCTGTGACAAGAACTTGGAGATGGCGGCAAGTGTCTTGTTTCAGGAGGCG
GAGGCTGGGGGAGGGAGTGGTGGTCCGGGAAGGGGGGAAGGGGGAGAATC
GGAGGGAGGGGACTCGGCTGGAAGCGGGGGAGATCGACAGATGTACTGAC
TTAGTATTTTATTTGTTGATTTGTTCAGAGGGAGGGAGGGGTGTTCGATG
TATGAAAGCGAAAGCACTCAGATATTAATGGTTTGGCCACTATGAGCACT
TCCTCTT
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protein sequence of jgi.p|Nanoce1779_2|592084

>mRNA_5308-protein ID=mRNA_5308-protein|Name=jgi.p|Nanoce1779_2|592084|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKV
LKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAPAPAQTAATAASTAD
ATAATATTAAASPAAPPAAPASVDPDQVEGLISMGFAEAHVRAALEATGG
NPDAAYTLLESGGPIQPPAPPATAGSAAPTASGAPGAIMSLEDLRASPQF
DQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGT
EAVGAGAGAGAAGAGAGGATQAQVNPFAGLGAMGMRGMEGMGGENGPSPQ
QLAQMLQSMPEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGMPG
AGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMA
ASVLFQEAEAGGGSGGPGRGEGGESEGGDSAGSGGDRQMY*
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mRNA from alignment at scaffold_13:132054..133755-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5308 ID=mRNA_5308|Name=jgi.p|Nanoce1779_2|592084|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp|location=Sequence derived from alignment at scaffold_13:132054..133755- (Nannochloropsis oceanica)
CAGGCCAGTAACGCTCTCGCCAACCGAGACTTCTCTTGCCTTCTTTCGCG
TGGCCGGGGCACCGTGGCTCTCTTCCCTTCCACATCACATCCGCACCCTT
GCCTCATAGTCACAGAGTCAAGCAAGATGAAGCTGATGGTGAGGGACGTG
GGGACTAAGAGGATGGTGGTCGAGGTCGAACCTTCCCTAAAGATAGGTGA
ATTGAAAACCAAGCTCCAAGCCGAGCACAGTGTTGCTGATCCTGCACGCC
AGAAGATGATTTACAAGGGAAAGGTATTGAAGGACGCCGACACCATCGAG
TCCACGGGTGTGACGGAGGCCGACTTCTACGTCTGCATGGTCTCGGCGCC
GCCCAAGGTATGTTGTCTAGGACGAGGGAGGGGGAGCGGGGAGGGAACTG
AAACGGAGAGGAGGAATGGGGAAGGCCTCGCCTGGCCACACACTTAGAGT
CAAGACACTTGCACGATCTCCTTCTCTCTTATATATACAGCCCAAGCCGA
CTGTGGTCGCCGCGCCAGCCCCTGCCCAGACAGCGGCCACGGCTGCTTCG
ACTGCGGATGCCACGGCGGCTACAGCCACTACAGCAGCCGCGTCGCCCGC
TGCTCCACCCGCTGCGCCTGCATCCGTGGACCCTGATCAAGTGGAGGGTC
TGATTTCGATGGGTTTTGCAGAGGCACATGTCCGTGCCGCGTTGGAAGCG
ACGGGTGGCAACCCAGATGCGGCCTACACGCTGTTGGAGAGCGGGGGCCC
CATCCAACCACCTGCCCCTCCCGCTACGGCTGGTAGTGCCGCTCCTACTG
CTAGCGGTGCTCCAGGGGCGATTATGTCTCTGGAAGATCTCCGAGCGTCG
CCGCAATTTGATCAGCTTCGTCGCATGGTTCAGAGTAATCCGAATGCGAT
TGACCAGGTGTTGGCGGTCATTGGGCAGCAGAGCCCGCAGCTCTTTCAGG
TCATTTTGGCGCAACAAGACGCGTTTATTGCAATGATGAACGAACCAATC
GAAGGCACAGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTGCCGCAGGTGC
TGGAGCGGGAGGGGCGACGCAAGCGCAAGTGAATCCGTTTGCGGGCCTCG
GAGCTATGGGGATGAGAGGGATGGAAGGAATGGGGGGCGAAAACGGGCCG
TCCCCGCAGCAGCTTGCGCAGATGTTGCAGTCCATGCCTGAGGCTCAGAG
GAACCAACTTTTGTCCACGCTTGTGGGGCTGCCGCTTGAGCAAGTGGAAC
AGTTTAGTGGTCAGCTGATCCAGGCGTTGGCGAGCGGGACGGCGCCGGGC
ATGCCGGGGGCGGGGGGAGGAGCGATGCCCCCCGGGGCGCAGCGAATTGA
GTTGACCGCAGAAGAGGCAGCGAATTTGAACCAGTTGGTGGAGATGGGAT
TTGAACGGAATGAGGCATTGCAGGTGTTTTTGGCCTGTGACAAGAACTTG
GAGATGGCGGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTGGGGGAGGGAG
TGGTGGTCCGGGAAGGGGGGAAGGGGGAGAATCGGAGGGAGGGGACTCGG
CTGGAAGCGGGGGAGATCGACAGATGTACTGACTTAGTATTTTATTTGTT
GATTTGTTCAGAGGGAGGGAGGGAGGGAGGGAGGGGTGTTCGATGTATGA
AAGCGAAAGCACTCAGATATTAATGGTTTGGCCACTATGAGCACTTCCTC
TT
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Coding sequence (CDS) from alignment at scaffold_13:132054..133755-

>mRNA_5308 ID=mRNA_5308|Name=jgi.p|Nanoce1779_2|592084|organism=Nannochloropsis oceanica|type=CDS|length=2646bp|location=Sequence derived from alignment at scaffold_13:132054..133755- (Nannochloropsis oceanica)
CCCAAGCCGACTGTGGTCGCCGCGCCAGCCCCTGCCCAGACAGCGGCCAC
GGCTGCTTCGACTGCGGATGCCACGGCGGCTACAGCCACTACAGCAGCCG
CGTCGCCCGCTGCTCCACCCGCTGCGCCTGCATCCGTGGACCCTGATCAA
GTGGAGGGTCTGATTTCGATGGGTTTTGCAGAGGCACATGTCCGTGCCGC
GTTGGAAGCGACGGGTGGCAACCCAGATGCGGCCTACACGCTGTTGGAGA
GCGGGGGCCCCATCCAACCACCTGCCCCTCCCGCTACGGCTGGTAGTGCC
GCTCCTACTGCTAGCGGTGCTCCAGGGGCGATTATGTCTCTGGAAGATCT
CCGAGCGTCGCCGCAATTTGATCAGCTTCGTCGCATGGTTCAGAGTAATC
CGAATGCGATTGACCAGGTGTTGGCGGTCATTGGGCAGCAGAGCCCGCAG
CTCTTTCAGGTCATTTTGGCGCAACAAGACGCGTTTATTGCAATGATGAA
CGAACCAATCGAAGGCACAGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTG
CCGCAGGTGCTGGAGCGGGAGGGGCGACGCAAGCGCAAGTGAATCCGTTT
GCGGGCCTCGGAGCTATGGGGATGAGAGGGATGGAAGGAATGGGGGGCGA
AAACGGGCCGTCCCCGCAGCAGCTTGCGCAGATGTTGCAGTCCATGCCTG
AGGCTCAGAGGAACCAACTTTTGTCCACGCTTGTGGGGCTGCCGCTTGAG
CAAGTGGAACAGTTTAGTGGTCAGCTGATCCAGGCGTTGGCGAGCGGGAC
GGCGCCGGGCATGCCGGGGGCGGGGGGAGGAGCGATGCCCCCCGGGGCGC
AGCGAATTGAGTTGACCGCAGAAGAGGCAGCGAATTTGAACCAGTTGGTG
GAGATGGGATTTGAACGGAATGAGGCATTGCAGGTGTTTTTGGCCTGTGA
CAAGAACTTGGAGATGGCGGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTG
GGGGAGGGAGTGGTGGTCCGGGAAGGGGGGAAGGGGGAGAATCGGAGGGA
GGGGACTCGGCTGGAAGCGGGGGAGATCGACAGATGTACTGAATGAAGCT
GATGGTGAGGGACGTGGGGACTAAGAGGATGGTGGTCGAGGTCGAACCTT
CCCTAAAGATAGGTGAATTGAAAACCAAGCTCCAAGCCGAGCACAGTGTT
GCTGATCCTGCACGCCAGAAGATGATTTACAAGGGAAAGGTATTGAAGGA
CGCCGACACCATCGAGTCCACGGGTGTGACGGAGGCCGACTTCTACGTCT
GCATGGTCTCGGCGCCGCCCAAGCCCAAGCCGACTGTGGTCGCCGCGCCA
GCCCCTGCCCAGACAGCGGCCACGGCTGCTTCGACTGCGGATGCCACGGC
GGCTACAGCCACTACAGCAGCCGCGTCGCCCGCTGCTCCACCCGCTGCGC
CTGCATCCGTGGACCCTGATCAAGTGGAGGGTCTGATTTCGATGGGTTTT
GCAGAGGCACATGTCCGTGCCGCGTTGGAAGCGACGGGTGGCAACCCAGA
TGCGGCCTACACGCTGTTGGAGAGCGGGGGCCCCATCCAACCACCTGCCC
CTCCCGCTACGGCTGGTAGTGCCGCTCCTACTGCTAGCGGTGCTCCAGGG
GCGATTATGTCTCTGGAAGATCTCCGAGCGTCGCCGCAATTTGATCAGCT
TCGTCGCATGGTTCAGAGTAATCCGAATGCGATTGACCAGGTGTTGGCGG
TCATTGGGCAGCAGAGCCCGCAGCTCTTTCAGGTCATTTTGGCGCAACAA
GACGCGTTTATTGCAATGATGAACGAACCAATCGAAGGCACAGAAGCAGT
GGGAGCGGGAGCGGGTGCGGGTGCCGCAGGTGCTGGAGCGGGAGGGGCGA
CGCAAGCGCAAGTGAATCCGTTTGCGGGCCTCGGAGCTATGGGGATGAGA
GGGATGGAAGGAATGGGGGGCGAAAACGGGCCGTCCCCGCAGCAGCTTGC
GCAGATGTTGCAGTCCATGCCTGAGGCTCAGAGGAACCAACTTTTGTCCA
CGCTTGTGGGGCTGCCGCTTGAGCAAGTGGAACAGTTTAGTGGTCAGCTG
ATCCAGGCGTTGGCGAGCGGGACGGCGCCGGGCATGCCGGGGGCGGGGGG
AGGAGCGATGCCCCCCGGGGCGCAGCGAATTGAGTTGACCGCAGAAGAGG
CAGCGAATTTGAACCAGTTGGTGGAGATGGGATTTGAACGGAATGAGGCA
TTGCAGGTGTTTTTGGCCTGTGACAAGAACTTGGAGATGGCGGCAAGTGT
CTTGTTTCAGGAGGCGGAGGCTGGGGGAGGGAGTGGTGGTCCGGGAAGGG
GGGAAGGGGGAGAATCGGAGGGAGGGGACTCGGCTGGAAGCGGGGGAGAT
CGACAGATGTACTGAATGAAGCTGATGGTGAGGGACGTGGGGACTAAGAG
GATGGTGGTCGAGGTCGAACCTTCCCTAAAGATAGGTGAATTGAAAACCA
AGCTCCAAGCCGAGCACAGTGTTGCTGATCCTGCACGCCAGAAGATGATT
TACAAGGGAAAGGTATTGAAGGACGCCGACACCATCGAGTCCACGGGTGT
GACGGAGGCCGACTTCTACGTCTGCATGGTCTCGGCGCCGCCCAAG
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Synonyms
Publications