jgi.p|Nanoce1779_2|592077, mRNA_5306 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592077
Unique NamemRNA_5306
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length801
Alignment locationscaffold_13:124650..125450 -

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Properties
Property NameValue
TranscriptId592163
TrackFilteredModels2
ProteinId592077
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:124650..125450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592077gene_5306Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5306CDS_5306Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592077mRNA_5306-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5306 ID=mRNA_5306|Name=jgi.p|Nanoce1779_2|592077|organism=Nannochloropsis oceanica|type=mRNA|length=801bp
CCTTCCTCTTCCCCCTCCTCCGCGTCCCGCTGAATGCGGCGGCTGTAACG
GGGAAGAGCGGGATGAACCCAAACCATCCTCTCTCCCTATGTCTCTCCCT
CCGTCTCCTCCTATAAAATAAGGAGAGGACTGATCACTCAGACTCGCCCC
ACTCTTCGGCCCCGGCGCCGAATTACCCCCTCCTCCACTTCTCCCTGCTC
CTGCTCCTGCTCCTGCTCCTGCCCCTCCCAAAGCCTGCCGCTGGAAGAAA
GACAACATATCCACATTGGCCCCGCCGCTCTCTTCGCCTCCGATCCCGCT
TCCTTCTCCCCTAGGATTTTGTGAGGCGTCCAAGGGTTTGTACGGGTCCC
AGAGAACTCTTGCCCTTGTCTGCGGCGAGCCTTCAGGCTCCAAAGGGTAG
GAGGAAGAGCAATGGAGCATGCCTGGTTGTTGCAGACTTCTGATAGGCAT
GAAGCCGGGAGGGACACTTAACTCGCTTTCTCTCCCTTTCGCATCCTGGT
GATTAAGGGGTGAGGAGAAGGAGGCGCCGCCGTCCACGGTTAGCGAAAAG
GAAGAGGAGGAAGGGAAAGAGGAGAGATGTGGTTGGTGATGTTGATGCTG
ATATTGCTGCTGGTGCTGCAAATCGGCTTCCGTTGGAACCCTTCCACCGT
GCAGACAATCATTGCTGTTCGCCATGTAGGAGGAGGAGGAGGAAACGGAC
GAGAAAGCACCAAGGCCGCTTGCACGACCCCCACTCCCGCTCCCGGCGCC
GGCCAAAAAATGATCGTCGATCCGAAGTTGGGGGAAAGGGCTGAGTTGTA
G
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protein sequence of jgi.p|Nanoce1779_2|592077

>mRNA_5306-protein ID=mRNA_5306-protein|Name=jgi.p|Nanoce1779_2|592077|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MWLVMLMLILLLVLQIGFRWNPSTVQTIIAVRHVGGGGGNGRESTKAACT
TPTPAPGAGQKMIVDPKLGERAEL*
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mRNA from alignment at scaffold_13:124650..125450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5306 ID=mRNA_5306|Name=jgi.p|Nanoce1779_2|592077|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at scaffold_13:124650..125450- (Nannochloropsis oceanica)
CCTTCCTCTTCCCCCTCCTCCGCGTCCCGCTGAATGCGGCGGCTGTAACG GGGAAGAGCGGGATGAACCCAAACCATCCTCTCTCCCTATGTCTCTCCCT CCGTCTCCTCCTATAAAATAAGGAGAGGACTGATCACTCAGACTCGCCCC ACTCTTCGGCCCCGGCGCCGAATTACCCCCTCCTCCACTTCTCCCTGCTC CTGCTCCTGCTCCTGCTCCTGCCCCTCCCAAAGCCTGCCGCTGGAAGAAA GACAACATATCCACATTGGCCCCGCCGCTCTCTTCGCCTCCGATCCCGCT TCCTTCTCCCCTAGGATTTTGTGAGGCGTCCAAGGGTTTGTACGGGTCCC AGAGAACTCTTGCCCTTGTCTGCGGCGAGCCTTCAGGCTCCAAAGGGTAG GAGGAAGAGCAATGGAGCATGCCTGGTTGTTGCAGACTTCTGATAGGCAT GAAGCCGGGAGGGACACTTAACTCGCTTTCTCTCCCTTTCGCATCCTGGT GATTAAGGGGTGAGGAGAAGGAGGCGCCGCCGTCCACGGTTAGCGAAAAG GAAGAGGAGGAAGGGAAAGAGGAGAGATGTGGTTGGTGATGTTGATGCTG ATATTGCTGCTGGTGCTGCAAATCGGCTTCCGTTGGAACCCTTCCACCGT GCAGACAATCATTGCTGTTCGCCATGTAGGAGGAGGAGGAGGAAACGGAC GAGAAAGCACCAAGGCCGCTTGCACGACCCCCACTCCCGCTCCCGGCGCC GGCCAAAAAATGATCGTCGATCCGAAGTTGGGGGAAAGGGCTGAGTTGTA G
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Coding sequence (CDS) from alignment at scaffold_13:124650..125450-

>mRNA_5306 ID=mRNA_5306|Name=jgi.p|Nanoce1779_2|592077|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_13:124650..125450- (Nannochloropsis oceanica)
ATGTGGTTGGTGATGTTGATGCTGATATTGCTGCTGGTGCTGCAAATCGG
CTTCCGTTGGAACCCTTCCACCGTGCAGACAATCATTGCTGTTCGCCATG
TAGGAGGAGGAGGAGGAAACGGACGAGAAAGCACCAAGGCCGCTTGCACG
ACCCCCACTCCCGCTCCCGGCGCCGGCCAAAAAATGATCGTCGATCCGAA
GTTGGGGGAAAGGGCTGAGTTGTAG
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Synonyms
Publications