jgi.p|Nanoce1779_2|556310, mRNA_5304 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556310
Unique NamemRNA_5304
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length725
Alignment locationscaffold_13:119377..120206 -

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Properties
Property NameValue
TranscriptId556396
TrackFilteredModels2
ProteinId556310
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:119377..120206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556310gene_5304Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556310mRNA_5304-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5304CDS_5304Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5304 ID=mRNA_5304|Name=jgi.p|Nanoce1779_2|556310|organism=Nannochloropsis oceanica|type=mRNA|length=725bp
CAGATCAACAGGACCTGTTCCATCTTACAACTCGAGATCTTGTCCGCCTG
TTCGTCAATCAACGAAATGACAAGCACCACCCAAGCTCTGAAATTCTGGG
AAGCTAAGACAAGCATGGTCGCAGCCAAGGCCACTCAGGTAAAAATGTGT
TGCCAAGGTATCGTCAAGCTCGATTCGTCGCTCAACGCCTTGAGCAACTG
TGAGTGCCTCTCCCTCTCCACCAACCAGATCGACCGAATGGTTCCACTAA
CGGGGATGAAAAAATTACGAGTTTTATCCTTGGGACGAAACCAGCTCAAG
AAAATCGAGAAGTTGGAGGACGTGGGCGAAACTTTGGAAGAGCTCTGGCT
TTCGTACAATTTGGTCACTTCCCTCGATGGCCTGGCTTCCTTGAACAAGC
TTACAACTCTCTTCATCTCTAATAATCAAATTAAAGCATGGGCAGAGATC
GATAAATTGGCCGCCATGCCAAATCTGCGCGATGTGCTCTTGGTGGGAAA
TCCCATCTATGACGGCATGTCGAAGGAAGAAGCCCGTTTAGAGGTTTTGC
GGCGCCTTCCCTTTATCAAGAAAATCGATGGGGTTCTGGTCACACCCTTG
GAGACGGAAAAGGCTTTGGGGGCCAGCGTTGCAGAGGGATCAACCGGGGC
CTCAAAGGCGACGGCGGCGGGCGCCACGAGCAGTGTGGCACCAATAGAGT
AATTAACAAATATGTTTGGTGAGAG
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protein sequence of jgi.p|Nanoce1779_2|556310

>mRNA_5304-protein ID=mRNA_5304-protein|Name=jgi.p|Nanoce1779_2|556310|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MTSTTQALKFWEAKTSMVAAKATQVKMCCQGIVKLDSSLNALSNCECLSL
STNQIDRMVPLTGMKKLRVLSLGRNQLKKIEKLEDVGETLEELWLSYNLV
TSLDGLASLNKLTTLFISNNQIKAWAEIDKLAAMPNLRDVLLVGNPIYDG
MSKEEARLEVLRRLPFIKKIDGVLVTPLETEKALGASVAEGSTGASKATA
AGATSSVAPIE*
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mRNA from alignment at scaffold_13:119377..120206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5304 ID=mRNA_5304|Name=jgi.p|Nanoce1779_2|556310|organism=Nannochloropsis oceanica|type=mRNA|length=830bp|location=Sequence derived from alignment at scaffold_13:119377..120206- (Nannochloropsis oceanica)
CAGATCAACAGGACCTGTTCCATCTTACAACTCGAGATCTTGTCCGCCTG
TTCGTCAATCAACGAAATGGTGAGTTGTTGTTGTTGTCTCTCGAAAATGT
GATGGGCCGTCCCTCCTTTTTTTTTCCCACACCTCTTTTACCCCCACACG
ACAAACTACGAACCTTAAACTAAGACAAGCACCACCCAAGCTCTGAAATT
CTGGGAAGCTAAGACAAGCATGGTCGCAGCCAAGGCCACTCAGGTAAAAA
TGTGTTGCCAAGGTATCGTCAAGCTCGATTCGTCGCTCAACGCCTTGAGC
AACTGTGAGTGCCTCTCCCTCTCCACCAACCAGATCGACCGAATGGTTCC
ACTAACGGGGATGAAAAAATTACGAGTTTTATCCTTGGGACGAAACCAGC
TCAAGAAAATCGAGAAGTTGGAGGACGTGGGCGAAACTTTGGAAGAGCTC
TGGCTTTCGTACAATTTGGTCACTTCCCTCGATGGCCTGGCTTCCTTGAA
CAAGCTTACAACTCTCTTCATCTCTAATAATCAAATTAAAGCATGGGCAG
AGATCGATAAATTGGCCGCCATGCCAAATCTGCGCGATGTGCTCTTGGTG
GGAAATCCCATCTATGACGGCATGTCGAAGGAAGAAGCCCGTTTAGAGGT
TTTGCGGCGCCTTCCCTTTATCAAGAAAATCGATGGGGTTCTGGTCACAC
CCTTGGAGACGGAAAAGGCTTTGGGGGCCAGCGTTGCAGAGGGATCAACC
GGGGCCTCAAAGGCGACGGCGGCGGGCGCCACGAGCAGTGTGGCACCAAT
AGAGTAATTAACAAATATGTTTGGTGAGAG
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Coding sequence (CDS) from alignment at scaffold_13:119377..120206-

>mRNA_5304 ID=mRNA_5304|Name=jgi.p|Nanoce1779_2|556310|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_13:119377..120206- (Nannochloropsis oceanica)
ACAAGCACCACCCAAGCTCTGAAATTCTGGGAAGCTAAGACAAGCATGGT
CGCAGCCAAGGCCACTCAGGTAAAAATGTGTTGCCAAGGTATCGTCAAGC
TCGATTCGTCGCTCAACGCCTTGAGCAACTGTGAGTGCCTCTCCCTCTCC
ACCAACCAGATCGACCGAATGGTTCCACTAACGGGGATGAAAAAATTACG
AGTTTTATCCTTGGGACGAAACCAGCTCAAGAAAATCGAGAAGTTGGAGG
ACGTGGGCGAAACTTTGGAAGAGCTCTGGCTTTCGTACAATTTGGTCACT
TCCCTCGATGGCCTGGCTTCCTTGAACAAGCTTACAACTCTCTTCATCTC
TAATAATCAAATTAAAGCATGGGCAGAGATCGATAAATTGGCCGCCATGC
CAAATCTGCGCGATGTGCTCTTGGTGGGAAATCCCATCTATGACGGCATG
TCGAAGGAAGAAGCCCGTTTAGAGGTTTTGCGGCGCCTTCCCTTTATCAA
GAAAATCGATGGGGTTCTGGTCACACCCTTGGAGACGGAAAAGGCTTTGG
GGGCCAGCGTTGCAGAGGGATCAACCGGGGCCTCAAAGGCGACGGCGGCG
GGCGCCACGAGCAGTGTGGCACCAATAGAGTAAATGACAAGCACCACCCA
AGCTCTGAAATTCTGGGAAGCTAAGACAAGCATGGTCGCAGCCAAGGCCA
CTCAGGTAAAAATGTGTTGCCAAGGTATCGTCAAGCTCGATTCGTCGCTC
AACGCCTTGAGCAACTGTGAGTGCCTCTCCCTCTCCACCAACCAGATCGA
CCGAATGGTTCCACTAACGGGGATGAAAAAATTACGAGTTTTATCCTTGG
GACGAAACCAGCTCAAGAAAATCGAGAAGTTGGAGGACGTGGGCGAAACT
TTGGAAGAGCTCTGGCTTTCGTACAATTTGGTCACTTCCCTCGATGGCCT
GGCTTCCTTGAACAAGCTTACAACTCTCTTCATCTCTAATAATCAAATTA
AAGCATGGGCAGAGATCGATAAATTGGCCGCCATGCCAAATCTGCGCGAT
GTGCTCTTGGTGGGAAATCCCATCTATGACGGCATGTCGAAGGAAGAAGC
CCGTTTAGAGGTTTTGCGGCGCCTTCCCTTTATCAAGAAAATCGATGGGG
TTCTGGTCACACCCTTGGAGACGGAAAAGGCTTTGGGGGCCAGCGTTGCA
GAGGGATCAACCGGGGCCTCAAAGGCGACGGCGGCGGGCGCCACGAGCAG
TGTGGCACCAATAGAGTAAATG
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Synonyms
Publications