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Properties
Property Name | Value |
TranscriptId | 566614 |
Track | FilteredModels2 |
ProteinId | 566528 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_13 | supercontig | scaffold_13:115678..117929 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5303 ID=mRNA_5303|Name=jgi.p|Nanoce1779_2|566528|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp ATGGCTTGTTATGGTGGGAGAGAAATAGATGGGCAGTGGTACCAGAGCAG CACCTCCCTCATCGATTACACCGCGCCCAGCGAAAGTCTTGATAACAATG CATTCGCTTATCCCTTCCTCTTCCTCTATCCTCACGCACGCAAAGGTAGG TACGTTCCCCCGGCTTTAAGAGGAGCAGCGAGCGGTGACGACAGTACGGC TTCTGTGCCTTCCATCCACGCAGACGGAGGAGCAGGTGACACCAGCCACG AGAACGGCCACAACGACATCCCCGACGCGATCCACCCGGCGGCAGGTGCG CACCAGCGACAGCAGCAGCCTCTGCGCTACCCCCACAGCTTGCACCCGCA ACAACCTAACATGGGAGATTATCGAAGTGGTGCCCCCCCCCCTTCCTATG GCGGAGGAGGAGGGTATGGTGGAGGAGGATATGGTGGAGGAGGAGGATAT GGAGGGGGAGGAGGGCGAGGGGGAAGTCGAGGTGGCTGGGATCAAGGAGG AGGGTCGTATGGTCGTGGAGGAGGAGGAGGGTATCGAGGTGGGAATGGAG GGGGGGGCTACTCGGGGTCTGCGCGAGTGAATGCGCAGGGATTTCACGGG GACGAGCGCCCGAACAAGCAGTTGGAGGACCAGCTGTTCCGCAAGCCGCA CGCGCAGACTACAGGGATTAATTTCGATAAATATGACGATATTCCCGTGG AGACGAGTGGGGAAGGGTGCCCGGAACCGATCACGAGTTTTACTGAGGAG ATGGTTGGGGCGCAGATGATGACGAATTTGGCGTTTTGCAACTACACCAA GCCCACGCCCGTGCAGAAGTATTCAGTTCCCATTGGATTGGCGGATCGGG ACTTGATGGCTTGTGCCCAGACGGGGTCGGGGAAGACGGCGGGGTTTTTG TTTCCTACAATCGTGTCCATGTTGCGACAGGGTGCACCGGAGCCACCGCA GGGGGGGCGGAATACGGGAAGGAAGGTGTACCCCATGGCGCTTGTGCTTG CACCGACGCGGGAGTTGGCGAGCCAGATTTTCGATGAGGCGCAAAAGTTT TGTTACTGTACGGGGGTGAGGCCTGTCGTGATTTACGGAGGGGCGGAGGT GAGGAATCAGTTGAGGGAGCTGGAACGGGGGTGTGACTTACTCGTGGCGA CGCCTGGGAGGTTGGTAGACCTGATGGAGCGGGACCGGATCAGCCTGCAG AGCATTCGATTCCTGATCCTGGATGAGGCGGATCGCATGCTTGACATGGG CTTTGAGCCGCAGATCCGGAGGATTGTGGAGCAGGAAGGTATGCCGACGG ACGCCAGGCAGACCTTCATGTTCAGTGCGACGTTTCCCCGGGATATTCAA CGGCTGGCGGCTGATTTCATGAAGGATTACATTTTCCTGGCGGTGGGGAG GGTGGGGTCGGCGAGTAAGGATGTGATCCAAAAGATTGAGTACGTGGAGA TGCACGACAAGATCCATTTCCTTGTCACATTTTTGAGCCAGTGCGACGAT TCGGGCCTGATTCTGATTTTCGTGGAGCGGAAGCGCGATGCGGATTATCT TGAGGGCGTGTTGTATAAGCAGGGCTTTCCATCGGCGAGTATCCATGGGG ACAAGACGCAGAGGGAGCGGGAGGAGGCGTTGCACTACTTTAAAACTGGC CAGTGCCCTGTGCTCGTCGCCACAGACGTCGCGGCCCGTGGGCTGGACAT CTCCAACGTGACTCAGGTGATCAACTACGACCTCCCTAACAATATCGACG ACTACGTGCACCGCATCGGACGTACCGGCCGTGTCGGCAACGTCGGGCAC GCCCTGTCGTTGATGAACGAGAAGAACAAGAACATTGCGCGGGAGCTCTT TGATCTGCTCTCGGAGAATGGGCATGATATCCCCCGGTTCTTGGAGGACA TGGCTTATTCTGGCGGAGGGGGCGGAGGGCGCAAGCCGCGAGGGGGAGGA AGGGGAGGAGCGCGCTTCGGAGCGAGGGATTTCCGAAAAGACCGGGGAGG TGGGGGAGGAGACGGCTACGATCGTGGAGGACGGGGGGGGGGTTATCAGG GGGGGTATGGCAGTGGAGGTGGAGGGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|566528 >mRNA_5303-protein ID=mRNA_5303-protein|Name=jgi.p|Nanoce1779_2|566528|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp MACYGGREIDGQWYQSSTSLIDYTAPSESLDNNAFAYPFLFLYPHARKGR YVPPALRGAASGDDSTASVPSIHADGGAGDTSHENGHNDIPDAIHPAAGA HQRQQQPLRYPHSLHPQQPNMGDYRSGAPPPSYGGGGGYGGGGYGGGGGY GGGGGRGGSRGGWDQGGGSYGRGGGGGYRGGNGGGGYSGSARVNAQGFHG DERPNKQLEDQLFRKPHAQTTGINFDKYDDIPVETSGEGCPEPITSFTEE MVGAQMMTNLAFCNYTKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFL FPTIVSMLRQGAPEPPQGGRNTGRKVYPMALVLAPTRELASQIFDEAQKF CYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLMERDRISLQ SIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDARQTFMFSATFPRDIQ RLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHFLVTFLSQCDD SGLILIFVERKRDADYLEGVLYKQGFPSASIHGDKTQREREEALHYFKTG QCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGH ALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYSGGGGGGRKPRGGG RGGARFGARDFRKDRGGGGGDGYDRGGRGGGYQGGYGSGGGG* back to topmRNA from alignment at scaffold_13:115678..117929- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5303 ID=mRNA_5303|Name=jgi.p|Nanoce1779_2|566528|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp|location=Sequence derived from alignment at scaffold_13:115678..117929- (Nannochloropsis oceanica) ATGGCTTGTTATGGTGGGAGAGAAATAGATGGGCAGTGGTACCAGAGCAG
CACCTCCCTCATCGATTACACCGCGCCCAGCGAAAGTCTTGATAACAATG
CATTCGCTTATCCCTTCCTCTTCCTCTATCCTCACGCACGCAAAGGTAGG
TACGTTCCCCCGGCTTTAAGAGGAGCAGCGAGCGGTGACGACAGTACGGC
TTCTGTGCCTTCCATCCACGCAGACGGAGGAGCAGGTGACACCAGCCACG
AGAACGGCCACAACGACATCCCCGACGCGATCCACCCGGCGGCAGGTGCG
CACCAGCGACAGCAGCAGCCTCTGCGCTACCCCCACAGCTTGCACCCGCA
ACAACCTAACATGGGAGATTATCGAAGTGGTGCCCCCCCCCCTTCCTATG
GCGGAGGAGGAGGGTATGGTGGAGGAGGATATGGTGGAGGAGGAGGATAT
GGAGGGGGAGGAGGGCGAGGGGGAAGTCGAGGTGGCTGGGATCAAGGAGG
AGGGTCGTATGGTCGTGGAGGAGGAGGAGGGTATCGAGGTGGGAATGGAG
GGGGGGGCTACTCGGGGTCTGCGCGAGTGAATGCGCAGGGATTTCACGGG
GACGAGCGCCCGAACAAGCAGTTGGAGGACCAGCTGTTCCGCAAGCCGCA
CGCGCAGACTACAGGGATTAATTTCGATAAATATGACGATATTCCCGTGG
AGACGAGTGGGGAAGGGTGCCCGGAACCGATCACGAGTTTTACTGAGGAG
ATGGTTGGGGCGCAGATGATGACGAATTTGGCGTTTTGCAACTACACCAA
GCCCACGCCCGTGCAGAAGTATTCAGTTCCCATTGGATTGGCGGATCGGG
ACTTGATGGCTTGTGCCCAGACGGGGTCGGGGAAGACGGCGGGGTTTTTG
TTTCCTACAATCGTGTCCATGTTGCGACAGGGTGCACCGGAGCCACCGCA
GGGGGGGCGGAATACGGGAAGGAAGGTGTACCCCATGGCGCTTGTGCTTG
CACCGACGCGGGAGTTGGCGAGCCAGATTTTCGATGAGGCGCAAAAGTTT
TGTTACTGTACGGGGGTGAGGCCTGTCGTGATTTACGGAGGGGCGGAGGT
GAGGAATCAGTTGAGGGAGCTGGAACGGGGGTGTGACTTACTCGTGGCGA
CGCCTGGGAGGTTGGTAGACCTGATGGAGCGGGACCGGATCAGCCTGCAG
AGCATTCGATTCCTGATCCTGGATGAGGCGGATCGCATGCTTGACATGGG
CTTTGAGCCGCAGATCCGGAGGATTGTGGAGCAGGAAGGTATGCCGACGG
ACGCCAGGCAGACCTTCATGTTCAGTGCGACGTTTCCCCGGGATATTCAA
CGGCTGGCGGCTGATTTCATGAAGGATTACATTTTCCTGGCGGTGGGGAG
GGTGGGGTCGGCGAGTAAGGATGTGATCCAAAAGATTGAGTACGTGGAGA
TGCACGACAAGATCCATTTCCTTGTCACATTTTTGAGCCAGTGCGACGAT
TCGGGCCTGATTCTGATTTTCGTGGAGCGGAAGCGCGATGCGGATTATCT
TGAGGGCGTGTTGTATAAGCAGGGCTTTCCATCGGCGAGTATCCATGGGG
ACAAGACGCAGAGGGAGCGGGAGGAGGCGTTGCACTACTTTAAAACTGGT
ACGTAGTGGCTTTGGGTCTGGGGATATGTGTGTACGTGTGTATCTATGTC
GGTATCGTCCCTTATTTGTATGCATGCACGCTTGGAGAGTGCATGTCGTC
CTTCCCGCCGCGCCGTCTCACCCTCCCTCCCTCCCTCCTTCCCCCCCCCC
CCCCCCTTTCGAAACACACAGGCCAGTGCCCTGTGCTCGTCGCCACAGAC
GTCGCGGCCCGTGGGCTGGACATCTCCAACGTGACTCAGGTGATCAACTA
CGACCTCCCTAACAATATCGACGACTACGTGCACCGCATCGGACGTACCG
GCCGTGTCGGCAACGTCGGGCACGCCCTGTCGTTGATGAACGAGAAGAAC
AAGAACATTGCGCGGGAGCTCTTTGATCTGCTCTCGGAGAATGGGCATGA
TATCCCCCGGTTCTTGGAGGACATGGCTTATTCTGGCGGAGGGGGCGGAG
GGCGCAAGCCGCGAGGGGGAGGAAGGGGAGGAGCGCGCTTCGGAGCGAGG
GATTTCCGAAAAGACCGGGGAGGTGGGGGAGGAGACGGCTACGATCGTGG
AGGACGGGGGGGGGGTTATCAGGGGGGGTATGGCAGTGGAGGTGGAGGGT
GA back to topCoding sequence (CDS) from alignment at scaffold_13:115678..117929- >mRNA_5303 ID=mRNA_5303|Name=jgi.p|Nanoce1779_2|566528|organism=Nannochloropsis oceanica|type=CDS|length=4158bp|location=Sequence derived from alignment at scaffold_13:115678..117929- (Nannochloropsis oceanica) GCCAGTGCCCTGTGCTCGTCGCCACAGACGTCGCGGCCCGTGGGCTGGAC ATCTCCAACGTGACTCAGGTGATCAACTACGACCTCCCTAACAATATCGA CGACTACGTGCACCGCATCGGACGTACCGGCCGTGTCGGCAACGTCGGGC ACGCCCTGTCGTTGATGAACGAGAAGAACAAGAACATTGCGCGGGAGCTC TTTGATCTGCTCTCGGAGAATGGGCATGATATCCCCCGGTTCTTGGAGGA CATGGCTTATTCTGGCGGAGGGGGCGGAGGGCGCAAGCCGCGAGGGGGAG GAAGGGGAGGAGCGCGCTTCGGAGCGAGGGATTTCCGAAAAGACCGGGGA GGTGGGGGAGGAGACGGCTACGATCGTGGAGGACGGGGGGGGGGTTATCA GGGGGGGTATGGCAGTGGAGGTGGAGGGTGAATGGCTTGTTATGGTGGGA GAGAAATAGATGGGCAGTGGTACCAGAGCAGCACCTCCCTCATCGATTAC ACCGCGCCCAGCGAAAGTCTTGATAACAATGCATTCGCTTATCCCTTCCT CTTCCTCTATCCTCACGCACGCAAAGGTAGGTACGTTCCCCCGGCTTTAA GAGGAGCAGCGAGCGGTGACGACAGTACGGCTTCTGTGCCTTCCATCCAC GCAGACGGAGGAGCAGGTGACACCAGCCACGAGAACGGCCACAACGACAT CCCCGACGCGATCCACCCGGCGGCAGGTGCGCACCAGCGACAGCAGCAGC CTCTGCGCTACCCCCACAGCTTGCACCCGCAACAACCTAACATGGGAGAT TATCGAAGTGGTGCCCCCCCCCCTTCCTATGGCGGAGGAGGAGGGTATGG TGGAGGAGGATATGGTGGAGGAGGAGGATATGGAGGGGGAGGAGGGCGAG GGGGAAGTCGAGGTGGCTGGGATCAAGGAGGAGGGTCGTATGGTCGTGGA GGAGGAGGAGGGTATCGAGGTGGGAATGGAGGGGGGGGCTACTCGGGGTC TGCGCGAGTGAATGCGCAGGGATTTCACGGGGACGAGCGCCCGAACAAGC AGTTGGAGGACCAGCTGTTCCGCAAGCCGCACGCGCAGACTACAGGGATT AATTTCGATAAATATGACGATATTCCCGTGGAGACGAGTGGGGAAGGGTG CCCGGAACCGATCACGAGTTTTACTGAGGAGATGGTTGGGGCGCAGATGA TGACGAATTTGGCGTTTTGCAACTACACCAAGCCCACGCCCGTGCAGAAG TATTCAGTTCCCATTGGATTGGCGGATCGGGACTTGATGGCTTGTGCCCA GACGGGGTCGGGGAAGACGGCGGGGTTTTTGTTTCCTACAATCGTGTCCA TGTTGCGACAGGGTGCACCGGAGCCACCGCAGGGGGGGCGGAATACGGGA AGGAAGGTGTACCCCATGGCGCTTGTGCTTGCACCGACGCGGGAGTTGGC GAGCCAGATTTTCGATGAGGCGCAAAAGTTTTGTTACTGTACGGGGGTGA GGCCTGTCGTGATTTACGGAGGGGCGGAGGTGAGGAATCAGTTGAGGGAG CTGGAACGGGGGTGTGACTTACTCGTGGCGACGCCTGGGAGGTTGGTAGA CCTGATGGAGCGGGACCGGATCAGCCTGCAGAGCATTCGATTCCTGATCC TGGATGAGGCGGATCGCATGCTTGACATGGGCTTTGAGCCGCAGATCCGG AGGATTGTGGAGCAGGAAGGTATGCCGACGGACGCCAGGCAGACCTTCAT GTTCAGTGCGACGTTTCCCCGGGATATTCAACGGCTGGCGGCTGATTTCA TGAAGGATTACATTTTCCTGGCGGTGGGGAGGGTGGGGTCGGCGAGTAAG GATGTGATCCAAAAGATTGAGTACGTGGAGATGCACGACAAGATCCATTT CCTTGTCACATTTTTGAGCCAGTGCGACGATTCGGGCCTGATTCTGATTT TCGTGGAGCGGAAGCGCGATGCGGATTATCTTGAGGGCGTGTTGTATAAG CAGGGCTTTCCATCGGCGAGTATCCATGGGGACAAGACGCAGAGGGAGCG GGAGGAGGCGTTGCACTACTTTAAAACTGGCCAGTGCCCTGTGCTCGTCG CCACAGACGTCGCGGCCCGTGGGCTGGACATCTCCAACGTGACTCAGGTG ATCAACTACGACCTCCCTAACAATATCGACGACTACGTGCACCGCATCGG ACGTACCGGCCGTGTCGGCAACGTCGGGCACGCCCTGTCGTTGATGAACG AGAAGAACAAGAACATTGCGCGGGAGCTCTTTGATCTGCTCTCGGAGAAT GGGCATGATATCCCCCGGTTCTTGGAGGACATGGCTTATTCTGGCGGAGG GGGCGGAGGGCGCAAGCCGCGAGGGGGAGGAAGGGGAGGAGCGCGCTTCG GAGCGAGGGATTTCCGAAAAGACCGGGGAGGTGGGGGAGGAGACGGCTAC GATCGTGGAGGACGGGGGGGGGGTTATCAGGGGGGGTATGGCAGTGGAGG TGGAGGGTGAATGGCTTGTTATGGTGGGAGAGAAATAGATGGGCAGTGGT ACCAGAGCAGCACCTCCCTCATCGATTACACCGCGCCCAGCGAAAGTCTT GATAACAATGCATTCGCTTATCCCTTCCTCTTCCTCTATCCTCACGCACG CAAAGGTAGGTACGTTCCCCCGGCTTTAAGAGGAGCAGCGAGCGGTGACG ACAGTACGGCTTCTGTGCCTTCCATCCACGCAGACGGAGGAGCAGGTGAC ACCAGCCACGAGAACGGCCACAACGACATCCCCGACGCGATCCACCCGGC GGCAGGTGCGCACCAGCGACAGCAGCAGCCTCTGCGCTACCCCCACAGCT TGCACCCGCAACAACCTAACATGGGAGATTATCGAAGTGGTGCCCCCCCC CCTTCCTATGGCGGAGGAGGAGGGTATGGTGGAGGAGGATATGGTGGAGG AGGAGGATATGGAGGGGGAGGAGGGCGAGGGGGAAGTCGAGGTGGCTGGG ATCAAGGAGGAGGGTCGTATGGTCGTGGAGGAGGAGGAGGGTATCGAGGT GGGAATGGAGGGGGGGGCTACTCGGGGTCTGCGCGAGTGAATGCGCAGGG ATTTCACGGGGACGAGCGCCCGAACAAGCAGTTGGAGGACCAGCTGTTCC GCAAGCCGCACGCGCAGACTACAGGGATTAATTTCGATAAATATGACGAT ATTCCCGTGGAGACGAGTGGGGAAGGGTGCCCGGAACCGATCACGAGTTT TACTGAGGAGATGGTTGGGGCGCAGATGATGACGAATTTGGCGTTTTGCA ACTACACCAAGCCCACGCCCGTGCAGAAGTATTCAGTTCCCATTGGATTG GCGGATCGGGACTTGATGGCTTGTGCCCAGACGGGGTCGGGGAAGACGGC GGGGTTTTTGTTTCCTACAATCGTGTCCATGTTGCGACAGGGTGCACCGG AGCCACCGCAGGGGGGGCGGAATACGGGAAGGAAGGTGTACCCCATGGCG CTTGTGCTTGCACCGACGCGGGAGTTGGCGAGCCAGATTTTCGATGAGGC GCAAAAGTTTTGTTACTGTACGGGGGTGAGGCCTGTCGTGATTTACGGAG GGGCGGAGGTGAGGAATCAGTTGAGGGAGCTGGAACGGGGGTGTGACTTA CTCGTGGCGACGCCTGGGAGGTTGGTAGACCTGATGGAGCGGGACCGGAT CAGCCTGCAGAGCATTCGATTCCTGATCCTGGATGAGGCGGATCGCATGC TTGACATGGGCTTTGAGCCGCAGATCCGGAGGATTGTGGAGCAGGAAGGT ATGCCGACGGACGCCAGGCAGACCTTCATGTTCAGTGCGACGTTTCCCCG GGATATTCAACGGCTGGCGGCTGATTTCATGAAGGATTACATTTTCCTGG CGGTGGGGAGGGTGGGGTCGGCGAGTAAGGATGTGATCCAAAAGATTGAG TACGTGGAGATGCACGACAAGATCCATTTCCTTGTCACATTTTTGAGCCA GTGCGACGATTCGGGCCTGATTCTGATTTTCGTGGAGCGGAAGCGCGATG CGGATTATCTTGAGGGCGTGTTGTATAAGCAGGGCTTTCCATCGGCGAGT ATCCATGGGGACAAGACGCAGAGGGAGCGGGAGGAGGCGTTGCACTACTT TAAAACTG back to top
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