jgi.p|Nanoce1779_2|566528, mRNA_5303 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566528
Unique NamemRNA_5303
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2079
Alignment locationscaffold_13:115678..117929 -

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Properties
Property NameValue
TranscriptId566614
TrackFilteredModels2
ProteinId566528
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:115678..117929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566528gene_5303Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566528mRNA_5303-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5303CDS_5303Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5303 ID=mRNA_5303|Name=jgi.p|Nanoce1779_2|566528|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp
ATGGCTTGTTATGGTGGGAGAGAAATAGATGGGCAGTGGTACCAGAGCAG
CACCTCCCTCATCGATTACACCGCGCCCAGCGAAAGTCTTGATAACAATG
CATTCGCTTATCCCTTCCTCTTCCTCTATCCTCACGCACGCAAAGGTAGG
TACGTTCCCCCGGCTTTAAGAGGAGCAGCGAGCGGTGACGACAGTACGGC
TTCTGTGCCTTCCATCCACGCAGACGGAGGAGCAGGTGACACCAGCCACG
AGAACGGCCACAACGACATCCCCGACGCGATCCACCCGGCGGCAGGTGCG
CACCAGCGACAGCAGCAGCCTCTGCGCTACCCCCACAGCTTGCACCCGCA
ACAACCTAACATGGGAGATTATCGAAGTGGTGCCCCCCCCCCTTCCTATG
GCGGAGGAGGAGGGTATGGTGGAGGAGGATATGGTGGAGGAGGAGGATAT
GGAGGGGGAGGAGGGCGAGGGGGAAGTCGAGGTGGCTGGGATCAAGGAGG
AGGGTCGTATGGTCGTGGAGGAGGAGGAGGGTATCGAGGTGGGAATGGAG
GGGGGGGCTACTCGGGGTCTGCGCGAGTGAATGCGCAGGGATTTCACGGG
GACGAGCGCCCGAACAAGCAGTTGGAGGACCAGCTGTTCCGCAAGCCGCA
CGCGCAGACTACAGGGATTAATTTCGATAAATATGACGATATTCCCGTGG
AGACGAGTGGGGAAGGGTGCCCGGAACCGATCACGAGTTTTACTGAGGAG
ATGGTTGGGGCGCAGATGATGACGAATTTGGCGTTTTGCAACTACACCAA
GCCCACGCCCGTGCAGAAGTATTCAGTTCCCATTGGATTGGCGGATCGGG
ACTTGATGGCTTGTGCCCAGACGGGGTCGGGGAAGACGGCGGGGTTTTTG
TTTCCTACAATCGTGTCCATGTTGCGACAGGGTGCACCGGAGCCACCGCA
GGGGGGGCGGAATACGGGAAGGAAGGTGTACCCCATGGCGCTTGTGCTTG
CACCGACGCGGGAGTTGGCGAGCCAGATTTTCGATGAGGCGCAAAAGTTT
TGTTACTGTACGGGGGTGAGGCCTGTCGTGATTTACGGAGGGGCGGAGGT
GAGGAATCAGTTGAGGGAGCTGGAACGGGGGTGTGACTTACTCGTGGCGA
CGCCTGGGAGGTTGGTAGACCTGATGGAGCGGGACCGGATCAGCCTGCAG
AGCATTCGATTCCTGATCCTGGATGAGGCGGATCGCATGCTTGACATGGG
CTTTGAGCCGCAGATCCGGAGGATTGTGGAGCAGGAAGGTATGCCGACGG
ACGCCAGGCAGACCTTCATGTTCAGTGCGACGTTTCCCCGGGATATTCAA
CGGCTGGCGGCTGATTTCATGAAGGATTACATTTTCCTGGCGGTGGGGAG
GGTGGGGTCGGCGAGTAAGGATGTGATCCAAAAGATTGAGTACGTGGAGA
TGCACGACAAGATCCATTTCCTTGTCACATTTTTGAGCCAGTGCGACGAT
TCGGGCCTGATTCTGATTTTCGTGGAGCGGAAGCGCGATGCGGATTATCT
TGAGGGCGTGTTGTATAAGCAGGGCTTTCCATCGGCGAGTATCCATGGGG
ACAAGACGCAGAGGGAGCGGGAGGAGGCGTTGCACTACTTTAAAACTGGC
CAGTGCCCTGTGCTCGTCGCCACAGACGTCGCGGCCCGTGGGCTGGACAT
CTCCAACGTGACTCAGGTGATCAACTACGACCTCCCTAACAATATCGACG
ACTACGTGCACCGCATCGGACGTACCGGCCGTGTCGGCAACGTCGGGCAC
GCCCTGTCGTTGATGAACGAGAAGAACAAGAACATTGCGCGGGAGCTCTT
TGATCTGCTCTCGGAGAATGGGCATGATATCCCCCGGTTCTTGGAGGACA
TGGCTTATTCTGGCGGAGGGGGCGGAGGGCGCAAGCCGCGAGGGGGAGGA
AGGGGAGGAGCGCGCTTCGGAGCGAGGGATTTCCGAAAAGACCGGGGAGG
TGGGGGAGGAGACGGCTACGATCGTGGAGGACGGGGGGGGGGTTATCAGG
GGGGGTATGGCAGTGGAGGTGGAGGGTGA
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protein sequence of jgi.p|Nanoce1779_2|566528

>mRNA_5303-protein ID=mRNA_5303-protein|Name=jgi.p|Nanoce1779_2|566528|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp
MACYGGREIDGQWYQSSTSLIDYTAPSESLDNNAFAYPFLFLYPHARKGR
YVPPALRGAASGDDSTASVPSIHADGGAGDTSHENGHNDIPDAIHPAAGA
HQRQQQPLRYPHSLHPQQPNMGDYRSGAPPPSYGGGGGYGGGGYGGGGGY
GGGGGRGGSRGGWDQGGGSYGRGGGGGYRGGNGGGGYSGSARVNAQGFHG
DERPNKQLEDQLFRKPHAQTTGINFDKYDDIPVETSGEGCPEPITSFTEE
MVGAQMMTNLAFCNYTKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFL
FPTIVSMLRQGAPEPPQGGRNTGRKVYPMALVLAPTRELASQIFDEAQKF
CYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLMERDRISLQ
SIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDARQTFMFSATFPRDIQ
RLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHFLVTFLSQCDD
SGLILIFVERKRDADYLEGVLYKQGFPSASIHGDKTQREREEALHYFKTG
QCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGH
ALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYSGGGGGGRKPRGGG
RGGARFGARDFRKDRGGGGGDGYDRGGRGGGYQGGYGSGGGG*
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mRNA from alignment at scaffold_13:115678..117929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5303 ID=mRNA_5303|Name=jgi.p|Nanoce1779_2|566528|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp|location=Sequence derived from alignment at scaffold_13:115678..117929- (Nannochloropsis oceanica)
ATGGCTTGTTATGGTGGGAGAGAAATAGATGGGCAGTGGTACCAGAGCAG CACCTCCCTCATCGATTACACCGCGCCCAGCGAAAGTCTTGATAACAATG CATTCGCTTATCCCTTCCTCTTCCTCTATCCTCACGCACGCAAAGGTAGG TACGTTCCCCCGGCTTTAAGAGGAGCAGCGAGCGGTGACGACAGTACGGC TTCTGTGCCTTCCATCCACGCAGACGGAGGAGCAGGTGACACCAGCCACG AGAACGGCCACAACGACATCCCCGACGCGATCCACCCGGCGGCAGGTGCG CACCAGCGACAGCAGCAGCCTCTGCGCTACCCCCACAGCTTGCACCCGCA ACAACCTAACATGGGAGATTATCGAAGTGGTGCCCCCCCCCCTTCCTATG GCGGAGGAGGAGGGTATGGTGGAGGAGGATATGGTGGAGGAGGAGGATAT GGAGGGGGAGGAGGGCGAGGGGGAAGTCGAGGTGGCTGGGATCAAGGAGG AGGGTCGTATGGTCGTGGAGGAGGAGGAGGGTATCGAGGTGGGAATGGAG GGGGGGGCTACTCGGGGTCTGCGCGAGTGAATGCGCAGGGATTTCACGGG GACGAGCGCCCGAACAAGCAGTTGGAGGACCAGCTGTTCCGCAAGCCGCA CGCGCAGACTACAGGGATTAATTTCGATAAATATGACGATATTCCCGTGG AGACGAGTGGGGAAGGGTGCCCGGAACCGATCACGAGTTTTACTGAGGAG ATGGTTGGGGCGCAGATGATGACGAATTTGGCGTTTTGCAACTACACCAA GCCCACGCCCGTGCAGAAGTATTCAGTTCCCATTGGATTGGCGGATCGGG ACTTGATGGCTTGTGCCCAGACGGGGTCGGGGAAGACGGCGGGGTTTTTG TTTCCTACAATCGTGTCCATGTTGCGACAGGGTGCACCGGAGCCACCGCA GGGGGGGCGGAATACGGGAAGGAAGGTGTACCCCATGGCGCTTGTGCTTG CACCGACGCGGGAGTTGGCGAGCCAGATTTTCGATGAGGCGCAAAAGTTT TGTTACTGTACGGGGGTGAGGCCTGTCGTGATTTACGGAGGGGCGGAGGT GAGGAATCAGTTGAGGGAGCTGGAACGGGGGTGTGACTTACTCGTGGCGA CGCCTGGGAGGTTGGTAGACCTGATGGAGCGGGACCGGATCAGCCTGCAG AGCATTCGATTCCTGATCCTGGATGAGGCGGATCGCATGCTTGACATGGG CTTTGAGCCGCAGATCCGGAGGATTGTGGAGCAGGAAGGTATGCCGACGG ACGCCAGGCAGACCTTCATGTTCAGTGCGACGTTTCCCCGGGATATTCAA CGGCTGGCGGCTGATTTCATGAAGGATTACATTTTCCTGGCGGTGGGGAG GGTGGGGTCGGCGAGTAAGGATGTGATCCAAAAGATTGAGTACGTGGAGA TGCACGACAAGATCCATTTCCTTGTCACATTTTTGAGCCAGTGCGACGAT TCGGGCCTGATTCTGATTTTCGTGGAGCGGAAGCGCGATGCGGATTATCT TGAGGGCGTGTTGTATAAGCAGGGCTTTCCATCGGCGAGTATCCATGGGG ACAAGACGCAGAGGGAGCGGGAGGAGGCGTTGCACTACTTTAAAACTGGT ACGTAGTGGCTTTGGGTCTGGGGATATGTGTGTACGTGTGTATCTATGTC GGTATCGTCCCTTATTTGTATGCATGCACGCTTGGAGAGTGCATGTCGTC CTTCCCGCCGCGCCGTCTCACCCTCCCTCCCTCCCTCCTTCCCCCCCCCC CCCCCCTTTCGAAACACACAGGCCAGTGCCCTGTGCTCGTCGCCACAGAC GTCGCGGCCCGTGGGCTGGACATCTCCAACGTGACTCAGGTGATCAACTA CGACCTCCCTAACAATATCGACGACTACGTGCACCGCATCGGACGTACCG GCCGTGTCGGCAACGTCGGGCACGCCCTGTCGTTGATGAACGAGAAGAAC AAGAACATTGCGCGGGAGCTCTTTGATCTGCTCTCGGAGAATGGGCATGA TATCCCCCGGTTCTTGGAGGACATGGCTTATTCTGGCGGAGGGGGCGGAG GGCGCAAGCCGCGAGGGGGAGGAAGGGGAGGAGCGCGCTTCGGAGCGAGG GATTTCCGAAAAGACCGGGGAGGTGGGGGAGGAGACGGCTACGATCGTGG AGGACGGGGGGGGGGTTATCAGGGGGGGTATGGCAGTGGAGGTGGAGGGT GA
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Coding sequence (CDS) from alignment at scaffold_13:115678..117929-

>mRNA_5303 ID=mRNA_5303|Name=jgi.p|Nanoce1779_2|566528|organism=Nannochloropsis oceanica|type=CDS|length=4158bp|location=Sequence derived from alignment at scaffold_13:115678..117929- (Nannochloropsis oceanica)
GCCAGTGCCCTGTGCTCGTCGCCACAGACGTCGCGGCCCGTGGGCTGGAC
ATCTCCAACGTGACTCAGGTGATCAACTACGACCTCCCTAACAATATCGA
CGACTACGTGCACCGCATCGGACGTACCGGCCGTGTCGGCAACGTCGGGC
ACGCCCTGTCGTTGATGAACGAGAAGAACAAGAACATTGCGCGGGAGCTC
TTTGATCTGCTCTCGGAGAATGGGCATGATATCCCCCGGTTCTTGGAGGA
CATGGCTTATTCTGGCGGAGGGGGCGGAGGGCGCAAGCCGCGAGGGGGAG
GAAGGGGAGGAGCGCGCTTCGGAGCGAGGGATTTCCGAAAAGACCGGGGA
GGTGGGGGAGGAGACGGCTACGATCGTGGAGGACGGGGGGGGGGTTATCA
GGGGGGGTATGGCAGTGGAGGTGGAGGGTGAATGGCTTGTTATGGTGGGA
GAGAAATAGATGGGCAGTGGTACCAGAGCAGCACCTCCCTCATCGATTAC
ACCGCGCCCAGCGAAAGTCTTGATAACAATGCATTCGCTTATCCCTTCCT
CTTCCTCTATCCTCACGCACGCAAAGGTAGGTACGTTCCCCCGGCTTTAA
GAGGAGCAGCGAGCGGTGACGACAGTACGGCTTCTGTGCCTTCCATCCAC
GCAGACGGAGGAGCAGGTGACACCAGCCACGAGAACGGCCACAACGACAT
CCCCGACGCGATCCACCCGGCGGCAGGTGCGCACCAGCGACAGCAGCAGC
CTCTGCGCTACCCCCACAGCTTGCACCCGCAACAACCTAACATGGGAGAT
TATCGAAGTGGTGCCCCCCCCCCTTCCTATGGCGGAGGAGGAGGGTATGG
TGGAGGAGGATATGGTGGAGGAGGAGGATATGGAGGGGGAGGAGGGCGAG
GGGGAAGTCGAGGTGGCTGGGATCAAGGAGGAGGGTCGTATGGTCGTGGA
GGAGGAGGAGGGTATCGAGGTGGGAATGGAGGGGGGGGCTACTCGGGGTC
TGCGCGAGTGAATGCGCAGGGATTTCACGGGGACGAGCGCCCGAACAAGC
AGTTGGAGGACCAGCTGTTCCGCAAGCCGCACGCGCAGACTACAGGGATT
AATTTCGATAAATATGACGATATTCCCGTGGAGACGAGTGGGGAAGGGTG
CCCGGAACCGATCACGAGTTTTACTGAGGAGATGGTTGGGGCGCAGATGA
TGACGAATTTGGCGTTTTGCAACTACACCAAGCCCACGCCCGTGCAGAAG
TATTCAGTTCCCATTGGATTGGCGGATCGGGACTTGATGGCTTGTGCCCA
GACGGGGTCGGGGAAGACGGCGGGGTTTTTGTTTCCTACAATCGTGTCCA
TGTTGCGACAGGGTGCACCGGAGCCACCGCAGGGGGGGCGGAATACGGGA
AGGAAGGTGTACCCCATGGCGCTTGTGCTTGCACCGACGCGGGAGTTGGC
GAGCCAGATTTTCGATGAGGCGCAAAAGTTTTGTTACTGTACGGGGGTGA
GGCCTGTCGTGATTTACGGAGGGGCGGAGGTGAGGAATCAGTTGAGGGAG
CTGGAACGGGGGTGTGACTTACTCGTGGCGACGCCTGGGAGGTTGGTAGA
CCTGATGGAGCGGGACCGGATCAGCCTGCAGAGCATTCGATTCCTGATCC
TGGATGAGGCGGATCGCATGCTTGACATGGGCTTTGAGCCGCAGATCCGG
AGGATTGTGGAGCAGGAAGGTATGCCGACGGACGCCAGGCAGACCTTCAT
GTTCAGTGCGACGTTTCCCCGGGATATTCAACGGCTGGCGGCTGATTTCA
TGAAGGATTACATTTTCCTGGCGGTGGGGAGGGTGGGGTCGGCGAGTAAG
GATGTGATCCAAAAGATTGAGTACGTGGAGATGCACGACAAGATCCATTT
CCTTGTCACATTTTTGAGCCAGTGCGACGATTCGGGCCTGATTCTGATTT
TCGTGGAGCGGAAGCGCGATGCGGATTATCTTGAGGGCGTGTTGTATAAG
CAGGGCTTTCCATCGGCGAGTATCCATGGGGACAAGACGCAGAGGGAGCG
GGAGGAGGCGTTGCACTACTTTAAAACTGGCCAGTGCCCTGTGCTCGTCG
CCACAGACGTCGCGGCCCGTGGGCTGGACATCTCCAACGTGACTCAGGTG
ATCAACTACGACCTCCCTAACAATATCGACGACTACGTGCACCGCATCGG
ACGTACCGGCCGTGTCGGCAACGTCGGGCACGCCCTGTCGTTGATGAACG
AGAAGAACAAGAACATTGCGCGGGAGCTCTTTGATCTGCTCTCGGAGAAT
GGGCATGATATCCCCCGGTTCTTGGAGGACATGGCTTATTCTGGCGGAGG
GGGCGGAGGGCGCAAGCCGCGAGGGGGAGGAAGGGGAGGAGCGCGCTTCG
GAGCGAGGGATTTCCGAAAAGACCGGGGAGGTGGGGGAGGAGACGGCTAC
GATCGTGGAGGACGGGGGGGGGGTTATCAGGGGGGGTATGGCAGTGGAGG
TGGAGGGTGAATGGCTTGTTATGGTGGGAGAGAAATAGATGGGCAGTGGT
ACCAGAGCAGCACCTCCCTCATCGATTACACCGCGCCCAGCGAAAGTCTT
GATAACAATGCATTCGCTTATCCCTTCCTCTTCCTCTATCCTCACGCACG
CAAAGGTAGGTACGTTCCCCCGGCTTTAAGAGGAGCAGCGAGCGGTGACG
ACAGTACGGCTTCTGTGCCTTCCATCCACGCAGACGGAGGAGCAGGTGAC
ACCAGCCACGAGAACGGCCACAACGACATCCCCGACGCGATCCACCCGGC
GGCAGGTGCGCACCAGCGACAGCAGCAGCCTCTGCGCTACCCCCACAGCT
TGCACCCGCAACAACCTAACATGGGAGATTATCGAAGTGGTGCCCCCCCC
CCTTCCTATGGCGGAGGAGGAGGGTATGGTGGAGGAGGATATGGTGGAGG
AGGAGGATATGGAGGGGGAGGAGGGCGAGGGGGAAGTCGAGGTGGCTGGG
ATCAAGGAGGAGGGTCGTATGGTCGTGGAGGAGGAGGAGGGTATCGAGGT
GGGAATGGAGGGGGGGGCTACTCGGGGTCTGCGCGAGTGAATGCGCAGGG
ATTTCACGGGGACGAGCGCCCGAACAAGCAGTTGGAGGACCAGCTGTTCC
GCAAGCCGCACGCGCAGACTACAGGGATTAATTTCGATAAATATGACGAT
ATTCCCGTGGAGACGAGTGGGGAAGGGTGCCCGGAACCGATCACGAGTTT
TACTGAGGAGATGGTTGGGGCGCAGATGATGACGAATTTGGCGTTTTGCA
ACTACACCAAGCCCACGCCCGTGCAGAAGTATTCAGTTCCCATTGGATTG
GCGGATCGGGACTTGATGGCTTGTGCCCAGACGGGGTCGGGGAAGACGGC
GGGGTTTTTGTTTCCTACAATCGTGTCCATGTTGCGACAGGGTGCACCGG
AGCCACCGCAGGGGGGGCGGAATACGGGAAGGAAGGTGTACCCCATGGCG
CTTGTGCTTGCACCGACGCGGGAGTTGGCGAGCCAGATTTTCGATGAGGC
GCAAAAGTTTTGTTACTGTACGGGGGTGAGGCCTGTCGTGATTTACGGAG
GGGCGGAGGTGAGGAATCAGTTGAGGGAGCTGGAACGGGGGTGTGACTTA
CTCGTGGCGACGCCTGGGAGGTTGGTAGACCTGATGGAGCGGGACCGGAT
CAGCCTGCAGAGCATTCGATTCCTGATCCTGGATGAGGCGGATCGCATGC
TTGACATGGGCTTTGAGCCGCAGATCCGGAGGATTGTGGAGCAGGAAGGT
ATGCCGACGGACGCCAGGCAGACCTTCATGTTCAGTGCGACGTTTCCCCG
GGATATTCAACGGCTGGCGGCTGATTTCATGAAGGATTACATTTTCCTGG
CGGTGGGGAGGGTGGGGTCGGCGAGTAAGGATGTGATCCAAAAGATTGAG
TACGTGGAGATGCACGACAAGATCCATTTCCTTGTCACATTTTTGAGCCA
GTGCGACGATTCGGGCCTGATTCTGATTTTCGTGGAGCGGAAGCGCGATG
CGGATTATCTTGAGGGCGTGTTGTATAAGCAGGGCTTTCCATCGGCGAGT
ATCCATGGGGACAAGACGCAGAGGGAGCGGGAGGAGGCGTTGCACTACTT
TAAAACTG
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Synonyms
Publications