jgi.p|Nanoce1779_2|592064, mRNA_5301 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592064
Unique NamemRNA_5301
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1498
Alignment locationscaffold_13:113068..114565 +

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Properties
Property NameValue
TranscriptId592150
TrackFilteredModels2
ProteinId592064
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:113068..114565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592064gene_5301Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592064mRNA_5301-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5301CDS_5301Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5301 ID=mRNA_5301|Name=jgi.p|Nanoce1779_2|592064|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
TCAGCCTCGTATCGTATATGTAGCGTGTCTTTCCTCTCCCTTGATATTTC
TTGCGGTGATAAGGAGATAAATCGCCCTTCACACCTAATGCCCGGAGCCT
CAAGTCTTGATTCAAAAAGGGGAGGAAATGGAGAGTCAGCCACGCTCACT
TTCTCCCTTCCATTTCTTTCCCTCTCTCCAACCCTCCTCTCTATCTCCCC
TCTCAACCCAAAGCGAAGGGAAGAAACAGGGGAGGAGCGCGGAGGGTGCG
TGTGATTTTTGTGAGGCTCTTTGAGAGCGGCGAAAAGGTGCACCTTATAG
AATTAAGCTCCTCTCGTGAGTGCCATCTGCCTCGGACTGCGCAAAAACTA
CATCTTCATGTCCTTACTCTTATCTCTTTCTCTATTCGCGTATTTCTTAC
CTCATTTTGTTAGGCGTCTGTGTTTGTCGTGCTCTTGTATCATACAAACG
TTTGTGTCTAATCACCGTCTTCTTCGTCTTCTTCATCTTCTTCCCCCCTC
ACACCCCTCTCTTATCCCTATTCCGTCTTTCATTCACGGAGGTGGGGAGT
ACGGAGGGAGGGAGGCCGGCGGATCAGCCTTCTCTCTTGTTCTTGTTGCT
ATTCCTTCCTCATCATTTAAACCGTCTTCGTTCATTAATGTCTCCTGTTG
ATCCATATGTTTTTTCTCTCACGTGCTTGCTTTTCAGCAAGCACGTGAAG
AAAAACAAAAACCACAAAACGAAAGGCGGCCTCGGGAGGATCTCCAACAG
TACACCATCGTTGTGAAAGACCCCTAAGAAATAGGCGGGTGCCCATGACA
ACAGCAGCCAAACAAGCAAATGCCCTTTCCCCTTTAGAAACGTTTGTTCT
CCTATCAAGAGAGTTTGTATGCACTAGCTACTTGCTCTCTATCGATTACT
TGACACTCCAAAAACACACACACACGCACGCATGTGGCCAGACACATCTA
CCGTTACACCCTATATGAAGAGAAATAGACAGGTAATCGACCGTCAGCCG
GCCAGAAAGAGAGACAGATTAATGATTTAAAAAGACCACGAAGGCAGGCA
ATTTTACGCGATGCACCTACCACTTGCTACCTAGCATTACTTAATATTTT
CCACTCTCTCACTCTCACACTCTATGTCTCGATAACAGCGCTCTCGGCCC
CGAAAGCTCTGTATTCCGGGACTTGCATTAGATTTCACGATTAAAAAAAT
GAGTGAGGTTTCGCTCGTGATCTCATAACCCTCCCTTCTCCCTCCTTCGT
TTTCTCTTGCCTTCTCTATTTCTCTTACGGCGCCGGCGAATACTGATGGT
AAGCACACACCTTTCACAGACAAATCAAAATCATGAAAACTTCCATCTTC
TCGTCTTTACCCTTTTCTTTCTACTTCGACCTGCCACAGCTGCTGGTACT
ACTACTACTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGA
TGGTGGTGCTGCAAGAGCTTTCTTCTCTGTCCCTCTTCTGCTTTCTCC
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protein sequence of jgi.p|Nanoce1779_2|592064

>mRNA_5301-protein ID=mRNA_5301-protein|Name=jgi.p|Nanoce1779_2|592064|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MSLLLSLSLFAYFLPHFVRRLCLSCSCIIQTFVSNHRLLRLLHLLPPSHP
SLIPIPSFIHGGGEYGGREAGGSAFSLVLVAIPSSSFKPSSFINVSC*
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mRNA from alignment at scaffold_13:113068..114565+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5301 ID=mRNA_5301|Name=jgi.p|Nanoce1779_2|592064|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp|location=Sequence derived from alignment at scaffold_13:113068..114565+ (Nannochloropsis oceanica)
TCAGCCTCGTATCGTATATGTAGCGTGTCTTTCCTCTCCCTTGATATTTC
TTGCGGTGATAAGGAGATAAATCGCCCTTCACACCTAATGCCCGGAGCCT
CAAGTCTTGATTCAAAAAGGGGAGGAAATGGAGAGTCAGCCACGCTCACT
TTCTCCCTTCCATTTCTTTCCCTCTCTCCAACCCTCCTCTCTATCTCCCC
TCTCAACCCAAAGCGAAGGGAAGAAACAGGGGAGGAGCGCGGAGGGTGCG
TGTGATTTTTGTGAGGCTCTTTGAGAGCGGCGAAAAGGTGCACCTTATAG
AATTAAGCTCCTCTCGTGAGTGCCATCTGCCTCGGACTGCGCAAAAACTA
CATCTTCATGTCCTTACTCTTATCTCTTTCTCTATTCGCGTATTTCTTAC
CTCATTTTGTTAGGCGTCTGTGTTTGTCGTGCTCTTGTATCATACAAACG
TTTGTGTCTAATCACCGTCTTCTTCGTCTTCTTCATCTTCTTCCCCCCTC
ACACCCCTCTCTTATCCCTATTCCGTCTTTCATTCACGGAGGTGGGGAGT
ACGGAGGGAGGGAGGCCGGCGGATCAGCCTTCTCTCTTGTTCTTGTTGCT
ATTCCTTCCTCATCATTTAAACCGTCTTCGTTCATTAATGTCTCCTGTTG
ATCCATATGTTTTTTCTCTCACGTGCTTGCTTTTCAGCAAGCACGTGAAG
AAAAACAAAAACCACAAAACGAAAGGCGGCCTCGGGAGGATCTCCAACAG
TACACCATCGTTGTGAAAGACCCCTAAGAAATAGGCGGGTGCCCATGACA
ACAGCAGCCAAACAAGCAAATGCCCTTTCCCCTTTAGAAACGTTTGTTCT
CCTATCAAGAGAGTTTGTATGCACTAGCTACTTGCTCTCTATCGATTACT
TGACACTCCAAAAACACACACACACGCACGCATGTGGCCAGACACATCTA
CCGTTACACCCTATATGAAGAGAAATAGACAGGTAATCGACCGTCAGCCG
GCCAGAAAGAGAGACAGATTAATGATTTAAAAAGACCACGAAGGCAGGCA
ATTTTACGCGATGCACCTACCACTTGCTACCTAGCATTACTTAATATTTT
CCACTCTCTCACTCTCACACTCTATGTCTCGATAACAGCGCTCTCGGCCC
CGAAAGCTCTGTATTCCGGGACTTGCATTAGATTTCACGATTAAAAAAAT
GAGTGAGGTTTCGCTCGTGATCTCATAACCCTCCCTTCTCCCTCCTTCGT
TTTCTCTTGCCTTCTCTATTTCTCTTACGGCGCCGGCGAATACTGATGGT
AAGCACACACCTTTCACAGACAAATCAAAATCATGAAAACTTCCATCTTC
TCGTCTTTACCCTTTTCTTTCTACTTCGACCTGCCACAGCTGCTGGTACT
ACTACTACTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGA
TGGTGGTGCTGCAAGAGCTTTCTTCTCTGTCCCTCTTCTGCTTTCTCC
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Coding sequence (CDS) from alignment at scaffold_13:113068..114565+

>mRNA_5301 ID=mRNA_5301|Name=jgi.p|Nanoce1779_2|592064|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_13:113068..114565+ (Nannochloropsis oceanica)
ATGTCCTTACTCTTATCTCTTTCTCTATTCGCGTATTTCTTACCTCATTT
TGTTAGGCGTCTGTGTTTGTCGTGCTCTTGTATCATACAAACGTTTGTGT
CTAATCACCGTCTTCTTCGTCTTCTTCATCTTCTTCCCCCCTCACACCCC
TCTCTTATCCCTATTCCGTCTTTCATTCACGGAGGTGGGGAGTACGGAGG
GAGGGAGGCCGGCGGATCAGCCTTCTCTCTTGTTCTTGTTGCTATTCCTT
CCTCATCATTTAAACCGTCTTCGTTCATTAATGTCTCCTGTTGA
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Synonyms
Publications