jgi.p|Nanoce1779_2|623425, mRNA_5300 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|623425
Unique Name	mRNA_5300
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1485
Alignment location	scaffold_13:110763..112392 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	623511
Track	FilteredModels2
ProteinId	623425

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:110763..112392 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623425	gene_5300	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623425	mRNA_5300-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5300	CDS_5300	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:110763..112392+
coding sequence from alignment at scaffold_13:110763..112392+

mRNA sequence

>mRNA_5300 ID=mRNA_5300|Name=jgi.p|Nanoce1779_2|623425|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp
ATGTTTGACAATTTGTCGATCGTGGTAGTGGGCGCGTCGGGGGACCTGGC
CAAGAAAAAGACATTTCCGAGTCTGTTCGATTTGTACAGCCACGGGTACA
TTCCTGAGCATGTGGTTATCTTGGGCTATGCCCGCTCGCACAAATCTGAT
GAGGAGCTACGTGCCCAGCTTAAACCATTTCTGGTCAAGCACGGAGACGC
AGATAAGGTCGATAACTTCTTGGAAAAGATTGTATATCGGTCGGGTGAGT
ACAATGACAAGAATGCCTTTGCGTCCTTGCATGGCGAGCTGCTGGAGTTC
GAAGCGTCGCAAGGGATCTCGAACACTACCAACCGACTGTTTTACTTCGC
AATTCCTCCCAATGTGTTTCTGGATACGGCCCGCTCAATTCATGGGACGG
CAGTCTCCCCTTCAGGGTGGACGCGGATTGTTGTAGAAAAGCCGTTCGGG
CACGACTATGACAGTTGCGAGCGACTATCTGAAGGTCTTGGCGAATTATT
CACTGAAGACCATTTGTATAGGATCGACCACTACTTGGGGAAGGAGATGG
TGCAAAATTTGATATGTCTGCGGTTCGCGAACGAGTTTTTGGAGCCCTTG
TGGAACCGAGATCATGTTCAATGTGTGCTTATTACGTTTAAGGAAGACTT
CGGGACTCAGGGCCGAGGGGGATATTTTGACAAGTCGGGAATAATTCGAG
ATATTTTGCAGAATCATTTGACACAGGTCTTATCATTGGTGGCGATGGAG
CCTCCGGTGAGGGTGTCCGGGCCGGGGCACAGTGATTTTGTAAGAGATGC
GAAGGTGCAGTTGTTGGAGTGTATTCCATCTGTGACGGTGGATGATGTTG
TGCTGGGCCAGTACACGGGAGATGAGAAGCATGAAGGATACTTGGATGAT
ACGACCGTGCCGAATGAAAGTAGGACACCAACGTTTTGCTCGGCGGTGGT
GCGGATCCATAACAGACGGTGGGATGGCGTGCCGTTTATTTTGAAGGCGG
GCAAGGCGTTGGATGATCGCAAGGCGGAGATACGCGTGCAATTTCGACAG
CCGCCGGCGGGGCAGTATATGTTTGATGGACGGCCCATGCCGCCGAACGA
GCTCGTCATCCGCTTACAACCCAAGGAAGCGATTTACCTCAAAACCAACG
TGAAAGCCCCCGGTCTCCGCTCAGCCCCCCTGCAGTCCGAGCTCGATCTG
AGCTACCACTTGCGGTATCCTGACACTTATAACCCCGAGGCCTACACCCG
CCTTCTCCTCGACATCCTCCGTGGGCAACAATCCACTTTCGTGCGCAACG
ACGAGTTGCTCGCCAGCTGGAAAATATGGACACCGCTGCTTCACGCCATT
GAGCAAGGAAAGATCCAGCCGATTCCGTACGCGTATGGCTCGCGTGGGCC
GGCGGAAGCGGACGAGCTTGCGAAGAAGGTTGGGTTCGTGTACTCGGGCA
GATATACATGGATGAGTCCCGCGGCCAAGATTTAG

protein sequence of jgi.p|Nanoce1779_2|623425

>mRNA_5300-protein ID=mRNA_5300-protein|Name=jgi.p|Nanoce1779_2|623425|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MFDNLSIVVVGASGDLAKKKTFPSLFDLYSHGYIPEHVVILGYARSHKSD
EELRAQLKPFLVKHGDADKVDNFLEKIVYRSGEYNDKNAFASLHGELLEF
EASQGISNTTNRLFYFAIPPNVFLDTARSIHGTAVSPSGWTRIVVEKPFG
HDYDSCERLSEGLGELFTEDHLYRIDHYLGKEMVQNLICLRFANEFLEPL
WNRDHVQCVLITFKEDFGTQGRGGYFDKSGIIRDILQNHLTQVLSLVAME
PPVRVSGPGHSDFVRDAKVQLLECIPSVTVDDVVLGQYTGDEKHEGYLDD
TTVPNESRTPTFCSAVVRIHNRRWDGVPFILKAGKALDDRKAEIRVQFRQ
PPAGQYMFDGRPMPPNELVIRLQPKEAIYLKTNVKAPGLRSAPLQSELDL
SYHLRYPDTYNPEAYTRLLLDILRGQQSTFVRNDELLASWKIWTPLLHAI
EQGKIQPIPYAYGSRGPAEADELAKKVGFVYSGRYTWMSPAAKI*

mRNA from alignment at scaffold_13:110763..112392+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5300 ID=mRNA_5300|Name=jgi.p|Nanoce1779_2|623425|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp|location=Sequence derived from alignment at scaffold_13:110763..112392+ (Nannochloropsis oceanica)
ATGTTTGACAATTTGTCGATCGTGGTAGTGGGCGCGTCGGGGGACCTGGC
CAAGAAAAAGACATTTCCGAGTCTGTTCGATTTGTACAGCCACGGGTACA
TTCCTGAGCATGTGGTTATCTTGGGCTATGCCCGCTCGCACAAATCTGAT
GAGGAGCTACGTGCCCAGCTTAAACCATTTCTGGTCAAGCACGGAGACGC
AGATAAGGTCGATAACTTCTTGGAAAAGATTGTATATCGGTCGGGTGAGT
ACAATGACAAGAATGCCTTTGCGTCCTTGCATGGCGAGCTGCTGGAGTTC
GAAGCGTCGCAAGGGATCTCGAACACTACCAACCGACTGTTTTACTTCGC
AATTCCTCCCAATGTGTTTCTGGATACGGCCCGCTCAATTCATGGGACGG
CAGTCTCCCCTTCAGGGTGGACGCGGATTGTTGTAGAAAAGCCGTTCGGG
CACGACTATGACAGTTGCGAGCGACTATCTGAAGGTCTTGGCGAATTATT
CACTGAAGACCATTTGTATAGGATCGACCACTACTTGGGGAAGGAGATGG
TGCAAAATTTGATATGTCTGCGGTTCGCGAACGAGTTTTTGGAGCCCTTG
TGGAACCGAGATCATGTTCAATGTGTGCTTATTACGTTTAAGGAAGACTT
CGGGACTCAGGGCCGAGGGGGATATTTTGACAAGTCGGGAATAATTCGAG
ATATTTTGCAGAATCATTTGACACAGGTCTTATCATTGGTGGCGATGGAG
CCTCCGGTGAGGGTGTCCGGGCCGGGGCACAGTGATTTTGTAAGAGATGC
GAAGGTGCAGTTGTTGGAGTGTATTCCATCTGTGACGGTGGATGATGTTG
TGCTGGGCCAGTACACGGGAGATGAGAAGCATGAAGGATACTTGGATGAT
ACGACCGTGCCGAATGAAAGTAGGACACCAACGTTTTGCTCGGCGGTGGT
GCGGATCCATAACAGACGGTGGGATGGCGTGCCGTTTATTTTGAAGGCGG
GCAAGGCGTTGGATGATCGCAAGGCGGAGATACGCGTGCAATTTCGACAG
CCGCCGGCGGGGCAGTATATGTTTGATGGACGGGTACGTATGGGGGAAGG
GGAGGGAGGGAGGGAGGAAGGGAGGGAAGGGGGAAGGGAAGCCTTGTACT
CGTTTACCCTCACACGTCTTCGTTTTAGACAATCCACTTACCTCCCTCCC
CCCCTCCCTCCCTTTCTCACTCCCTCAGCCCATGCCGCCGAACGAGCTCG
TCATCCGCTTACAACCCAAGGAAGCGATTTACCTCAAAACCAACGTGAAA
GCCCCCGGTCTCCGCTCAGCCCCCCTGCAGTCCGAGCTCGATCTGAGCTA
CCACTTGCGGTATCCTGACACTTATAACCCCGAGGCCTACACCCGCCTTC
TCCTCGACATCCTCCGTGGGCAACAATCCACTTTCGTGCGCAACGACGAG
TTGCTCGCCAGCTGGAAAATATGGACACCGCTGCTTCACGCCATTGAGCA
AGGAAAGATCCAGCCGATTCCGTACGCGTATGGCTCGCGTGGGCCGGCGG
AAGCGGACGAGCTTGCGAAGAAGGTTGGGTTCGTGTACTCGGGCAGATAT
ACATGGATGAGTCCCGCGGCCAAGATTTAG

Coding sequence (CDS) from alignment at scaffold_13:110763..112392+

>mRNA_5300 ID=mRNA_5300|Name=jgi.p|Nanoce1779_2|623425|organism=Nannochloropsis oceanica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_13:110763..112392+ (Nannochloropsis oceanica)
ATGTTTGACAATTTGTCGATCGTGGTAGTGGGCGCGTCGGGGGACCTGGC
CAAGAAAAAGACATTTCCGAGTCTGTTCGATTTGTACAGCCACGGGTACA
TTCCTGAGCATGTGGTTATCTTGGGCTATGCCCGCTCGCACAAATCTGAT
GAGGAGCTACGTGCCCAGCTTAAACCATTTCTGGTCAAGCACGGAGACGC
AGATAAGGTCGATAACTTCTTGGAAAAGATTGTATATCGGTCGGGTGAGT
ACAATGACAAGAATGCCTTTGCGTCCTTGCATGGCGAGCTGCTGGAGTTC
GAAGCGTCGCAAGGGATCTCGAACACTACCAACCGACTGTTTTACTTCGC
AATTCCTCCCAATGTGTTTCTGGATACGGCCCGCTCAATTCATGGGACGG
CAGTCTCCCCTTCAGGGTGGACGCGGATTGTTGTAGAAAAGCCGTTCGGG
CACGACTATGACAGTTGCGAGCGACTATCTGAAGGTCTTGGCGAATTATT
CACTGAAGACCATTTGTATAGGATCGACCACTACTTGGGGAAGGAGATGG
TGCAAAATTTGATATGTCTGCGGTTCGCGAACGAGTTTTTGGAGCCCTTG
TGGAACCGAGATCATGTTCAATGTGTGCTTATTACGTTTAAGGAAGACTT
CGGGACTCAGGGCCGAGGGGGATATTTTGACAAGTCGGGAATAATTCGAG
ATATTTTGCAGAATCATTTGACACAGGTCTTATCATTGGTGGCGATGGAG
CCTCCGGTGAGGGTGTCCGGGCCGGGGCACAGTGATTTTGTAAGAGATGC
GAAGGTGCAGTTGTTGGAGTGTATTCCATCTGTGACGGTGGATGATGTTG
TGCTGGGCCAGTACACGGGAGATGAGAAGCATGAAGGATACTTGGATGAT
ACGACCGTGCCGAATGAAAGTAGGACACCAACGTTTTGCTCGGCGGTGGT
GCGGATCCATAACAGACGGTGGGATGGCGTGCCGTTTATTTTGAAGGCGG
GCAAGGCGTTGGATGATCGCAAGGCGGAGATACGCGTGCAATTTCGACAG
CCGCCGGCGGGGCAGTATATGTTTGATGGACGGCCCATGCCGCCGAACGA
GCTCGTCATCCGCTTACAACCCAAGGAAGCGATTTACCTCAAAACCAACG
TGAAAGCCCCCGGTCTCCGCTCAGCCCCCCTGCAGTCCGAGCTCGATCTG
AGCTACCACTTGCGGTATCCTGACACTTATAACCCCGAGGCCTACACCCG
CCTTCTCCTCGACATCCTCCGTGGGCAACAATCCACTTTCGTGCGCAACG
ACGAGTTGCTCGCCAGCTGGAAAATATGGACACCGCTGCTTCACGCCATT
GAGCAAGGAAAGATCCAGCCGATTCCGTACGCGTATGGCTCGCGTGGGCC
GGCGGAAGCGGACGAGCTTGCGAAGAAGGTTGGGTTCGTGTACTCGGGCA
GATATACATGGATGAGTCCCGCGGCCAAGATTTAGATGTTTGACAATTTG
TCGATCGTGGTAGTGGGCGCGTCGGGGGACCTGGCCAAGAAAAAGACATT
TCCGAGTCTGTTCGATTTGTACAGCCACGGGTACATTCCTGAGCATGTGG
TTATCTTGGGCTATGCCCGCTCGCACAAATCTGATGAGGAGCTACGTGCC
CAGCTTAAACCATTTCTGGTCAAGCACGGAGACGCAGATAAGGTCGATAA
CTTCTTGGAAAAGATTGTATATCGGTCGGGTGAGTACAATGACAAGAATG
CCTTTGCGTCCTTGCATGGCGAGCTGCTGGAGTTCGAAGCGTCGCAAGGG
ATCTCGAACACTACCAACCGACTGTTTTACTTCGCAATTCCTCCCAATGT
GTTTCTGGATACGGCCCGCTCAATTCATGGGACGGCAGTCTCCCCTTCAG
GGTGGACGCGGATTGTTGTAGAAAAGCCGTTCGGGCACGACTATGACAGT
TGCGAGCGACTATCTGAAGGTCTTGGCGAATTATTCACTGAAGACCATTT
GTATAGGATCGACCACTACTTGGGGAAGGAGATGGTGCAAAATTTGATAT
GTCTGCGGTTCGCGAACGAGTTTTTGGAGCCCTTGTGGAACCGAGATCAT
GTTCAATGTGTGCTTATTACGTTTAAGGAAGACTTCGGGACTCAGGGCCG
AGGGGGATATTTTGACAAGTCGGGAATAATTCGAGATATTTTGCAGAATC
ATTTGACACAGGTCTTATCATTGGTGGCGATGGAGCCTCCGGTGAGGGTG
TCCGGGCCGGGGCACAGTGATTTTGTAAGAGATGCGAAGGTGCAGTTGTT
GGAGTGTATTCCATCTGTGACGGTGGATGATGTTGTGCTGGGCCAGTACA
CGGGAGATGAGAAGCATGAAGGATACTTGGATGATACGACCGTGCCGAAT
GAAAGTAGGACACCAACGTTTTGCTCGGCGGTGGTGCGGATCCATAACAG
ACGGTGGGATGGCGTGCCGTTTATTTTGAAGGCGGGCAAGGCGTTGGATG
ATCGCAAGGCGGAGATACGCGTGCAATTTCGACAGCCGCCGGCGGGGCAG
TATATGTTTGATGGACGGCCCATGCCGCCGAACGAGCTCGTCATCCGCTT
ACAACCCAAGGAAGCGATTTACCTCAAAACCAACGTGAAAGCCCCCGGTC
TCCGCTCAGCCCCCCTGCAGTCCGAGCTCGATCTGAGCTACCACTTGCGG
TATCCTGACACTTATAACCCCGAGGCCTACACCCGCCTTCTCCTCGACAT
CCTCCGTGGGCAACAATCCACTTTCGTGCGCAACGACGAGTTGCTCGCCA
GCTGGAAAATATGGACACCGCTGCTTCACGCCATTGAGCAAGGAAAGATC
CAGCCGATTCCGTACGCGTATGGCTCGCGTGGGCCGGCGGAAGCGGACGA
GCTTGCGAAGAAGGTTGGGTTCGTGTACTCGGGCAGATATACATGGATGA
GTCCCGCGGCCAAGATTTAG

Synonyms

Publications