jgi.p|Nanoce1779_2|622557, mRNA_530 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622557
Unique Name	mRNA_530
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1806
Alignment location	scaffold_3:1283403..1285208 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	622643
Track	FilteredModels2
ProteinId	622557

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1283403..1285208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622557	gene_530	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622557	mRNA_530-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_530	CDS_530	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1283403..1285208+
coding sequence from alignment at scaffold_3:1283403..1285208+

mRNA sequence

>mRNA_530 ID=mRNA_530|Name=jgi.p|Nanoce1779_2|622557|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp
ATGCCTGTTGCGGCCGCCTCCTCTTCAGTCCTTACCCCTGGCGCGCATGC
CCAAGGTGCCCAGCCCTCATTCAAGCTTCCATCGCAGACTGTGGAGTGGC
AGCGGCTGGTGAAGCACGCCACGGAGATTAAGGCCTTGCATCTACGGCAT
CTGATTCAAGATCCGGTGCGTTCGGAGGCGTTGTGTGCGGAGTATGATGG
GATGTATTTCGACTATTCGCGGCAGCAAATGACGGTGGAAACACGTGCCC
TACTAATTGACTTGGCCAAACGCGCGCAAGTGGCAGAGAAAATAGCCGCA
ATGGCCCGCGGGGATAAGATCAACCATACGGAAGGGAGGGCGGCGTTGCA
TATGGCGACACGGGCGGGGAGGGAGGAGAGCATTGTGCTTGATGGGGTGG
ATGTGGTGGCGCAAGTGCATGGAGTCTTGGACAAGGTAAAGGCCTTTTCG
GAGGGGGTGAGGGCAGGGACCATACGCGGGGCGACGGGGAAGAAAATCCG
AAATATCGTTGCAGTCGGCATTGGAGGGAGTTATTTGGGCCCGGCGTGTA
TCCACGAGGTGTTCAAGACGGAGGAGGAGGGCTCCAGTTCATGCCGTGAT
TTCCGATTGAGGTTCCTCTCGAACGTCGATCCTGTAGACGTGGCACGGGC
GCAGGAGAAGCTGGACCCGGAGGAGACCCTGGTAATAGTAGTGAGCAAGT
CGTTCGTGACCGCCGAGACCATGTTGAATGCGCGGACGATGCGTCAGTGG
CTGTGGGATGGCATGGGAAAAGACCCAGAGGTTTGCGCGAAGCATATGGC
GGCGTGTGCCTCGGCGTCGGCGACGCATTTGGTGGAGGAATTCGGGATCC
CTAGCCACAGGCTATTTGAGTTTTGGGATTGGGTTGGGGGGAGGTATAGC
GTGTGTGCGTCTCCCGGGGCCTTGCCAATTTCGTTGAAGTTCGGATATGA
GGTGTTTGAGAAATTTCTGGCAGGTGCCCGGAGCATGGATCGGCATTTTT
TGACGGCGCCGTTTGAGAGGAATCTGCCGGTGCTGATGGGGTTGTTGGGC
GTCTGGAACATGAGTTTCCTTGGATACAAGTGCCGGACGATCATACCCTA
TGCGGAAGCCATGATGAAATTCCCCGCGCACATCCAGCAGGTGGACATGG
AGAGTAATGGGAAGCATGTGACGGTGGATGGAGAAGAGATCAATTACGAA
ATTGGCGAGATTGACTTTGGAGAGCCGGGCACCAATGGCCAGCATTCGTT
CTTCCAGTTGCTGCACATGGGCCAAGTAGTCCCTGTGGACTTCATTGGCT
TTGCGGAGAGCCAGAAGGCATTGCATGTGGTGGGGGAGGAGCTGTCGTCG
CACGACGAGTTGATGTGCAACTTTTTCGCGCAGCCCGATGCCTTGGCCAT
TGGTAAGACAAGCGCGGAGCTCCTGGCTGATGGTGTTTTGCCTCAGCATG
TTCCCCATCGGACTTTCAAGGGGAACCGACCCTCCCTCTCTCTCCTACTT
CCTCGCTTGAATGCTTACTCCATGGGTCAACTCTTGGCGTTGTATGAGCA
CAGGACGGCGGTGCAAGGTTTTGTGTGGCACGTCAATTCCTTCGACCAAT
GGGGGGTGGAGCTAGGGAAGCAGCTCGCGACGCATGTGAGGGATGAGATG
AAATTGGCTCGGTCGGGGAAAGCTGCAAACTTGCATGCACTCGTCCCGGC
AACGGCAAGGATTCTGCAACGGTACTGGGCAGGGGGAGGGAGTGGGGGAG
GGAAGGAGGAGAAGGTTGCGGTCGAGCAGGAGAAGGAGGGGAAACAGCAC
CATTAG

protein sequence of jgi.p|Nanoce1779_2|622557

>mRNA_530-protein ID=mRNA_530-protein|Name=jgi.p|Nanoce1779_2|622557|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MPVAAASSSVLTPGAHAQGAQPSFKLPSQTVEWQRLVKHATEIKALHLRH
LIQDPVRSEALCAEYDGMYFDYSRQQMTVETRALLIDLAKRAQVAEKIAA
MARGDKINHTEGRAALHMATRAGREESIVLDGVDVVAQVHGVLDKVKAFS
EGVRAGTIRGATGKKIRNIVAVGIGGSYLGPACIHEVFKTEEEGSSSCRD
FRLRFLSNVDPVDVARAQEKLDPEETLVIVVSKSFVTAETMLNARTMRQW
LWDGMGKDPEVCAKHMAACASASATHLVEEFGIPSHRLFEFWDWVGGRYS
VCASPGALPISLKFGYEVFEKFLAGARSMDRHFLTAPFERNLPVLMGLLG
VWNMSFLGYKCRTIIPYAEAMMKFPAHIQQVDMESNGKHVTVDGEEINYE
IGEIDFGEPGTNGQHSFFQLLHMGQVVPVDFIGFAESQKALHVVGEELSS
HDELMCNFFAQPDALAIGKTSAELLADGVLPQHVPHRTFKGNRPSLSLLL
PRLNAYSMGQLLALYEHRTAVQGFVWHVNSFDQWGVELGKQLATHVRDEM
KLARSGKAANLHALVPATARILQRYWAGGGSGGGKEEKVAVEQEKEGKQH
H*

mRNA from alignment at scaffold_3:1283403..1285208+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_530 ID=mRNA_530|Name=jgi.p|Nanoce1779_2|622557|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp|location=Sequence derived from alignment at scaffold_3:1283403..1285208+ (Nannochloropsis oceanica)
ATGCCTGTTGCGGCCGCCTCCTCTTCAGTCCTTACCCCTGGCGCGCATGC
CCAAGGTGCCCAGCCCTCATTCAAGCTTCCATCGCAGACTGTGGAGTGGC
AGCGGCTGGTGAAGCACGCCACGGAGATTAAGGCCTTGCATCTACGGCAT
CTGATTCAAGATCCGGTGCGTTCGGAGGCGTTGTGTGCGGAGTATGATGG
GATGTATTTCGACTATTCGCGGCAGCAAATGACGGTGGAAACACGTGCCC
TACTAATTGACTTGGCCAAACGCGCGCAAGTGGCAGAGAAAATAGCCGCA
ATGGCCCGCGGGGATAAGATCAACCATACGGAAGGGAGGGCGGCGTTGCA
TATGGCGACACGGGCGGGGAGGGAGGAGAGCATTGTGCTTGATGGGGTGG
ATGTGGTGGCGCAAGTGCATGGAGTCTTGGACAAGGTAAAGGCCTTTTCG
GAGGGGGTGAGGGCAGGGACCATACGCGGGGCGACGGGGAAGAAAATCCG
AAATATCGTTGCAGTCGGCATTGGAGGGAGTTATTTGGGCCCGGCGTGTA
TCCACGAGGTGTTCAAGACGGAGGAGGAGGGCTCCAGTTCATGCCGTGAT
TTCCGATTGAGGTTCCTCTCGAACGTCGATCCTGTAGACGTGGCACGGGC
GCAGGAGAAGCTGGACCCGGAGGAGACCCTGGTAATAGTAGTGAGCAAGT
CGTTCGTGACCGCCGAGACCATGTTGAATGCGCGGACGATGCGTCAGTGG
CTGTGGGATGGCATGGGAAAAGACCCAGAGGTTTGCGCGAAGCATATGGC
GGCGTGTGCCTCGGCGTCGGCGACGCATTTGGTGGAGGAATTCGGGATCC
CTAGCCACAGGCTATTTGAGTTTTGGGATTGGGTTGGGGGGAGGTATAGC
GTGTGTGCGTCTCCCGGGGCCTTGCCAATTTCGTTGAAGTTCGGATATGA
GGTGTTTGAGAAATTTCTGGCAGGTGCCCGGAGCATGGATCGGCATTTTT
TGACGGCGCCGTTTGAGAGGAATCTGCCGGTGCTGATGGGGTTGTTGGGC
GTCTGGAACATGAGTTTCCTTGGATACAAGTGCCGGACGATCATACCCTA
TGCGGAAGCCATGATGAAATTCCCCGCGCACATCCAGCAGGTGGACATGG
AGAGTAATGGGAAGCATGTGACGGTGGATGGAGAAGAGATCAATTACGAA
ATTGGCGAGATTGACTTTGGAGAGCCGGGCACCAATGGCCAGCATTCGTT
CTTCCAGTTGCTGCACATGGGCCAAGTAGTCCCTGTGGACTTCATTGGCT
TTGCGGAGAGCCAGAAGGCATTGCATGTGGTGGGGGAGGAGCTGTCGTCG
CACGACGAGTTGATGTGCAACTTTTTCGCGCAGCCCGATGCCTTGGCCAT
TGGTAAGACAAGCGCGGAGCTCCTGGCTGATGGTGTTTTGCCTCAGCATG
TTCCCCATCGGACTTTCAAGGGGAACCGACCCTCCCTCTCTCTCCTACTT
CCTCGCTTGAATGCTTACTCCATGGGTCAACTCTTGGCGTTGTATGAGCA
CAGGACGGCGGTGCAAGGTTTTGTGTGGCACGTCAATTCCTTCGACCAAT
GGGGGGTGGAGCTAGGGAAGCAGCTCGCGACGCATGTGAGGGATGAGATG
AAATTGGCTCGGTCGGGGAAAGCTGCAAACTTGCATGCACTCGTCCCGGC
AACGGCAAGGATTCTGCAACGGTACTGGGCAGGGGGAGGGAGTGGGGGAG
GGAAGGAGGAGAAGGTTGCGGTCGAGCAGGAGAAGGAGGGGAAACAGCAC
CATTAG

Coding sequence (CDS) from alignment at scaffold_3:1283403..1285208+

>mRNA_530 ID=mRNA_530|Name=jgi.p|Nanoce1779_2|622557|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_3:1283403..1285208+ (Nannochloropsis oceanica)
ATGCCTGTTGCGGCCGCCTCCTCTTCAGTCCTTACCCCTGGCGCGCATGC
CCAAGGTGCCCAGCCCTCATTCAAGCTTCCATCGCAGACTGTGGAGTGGC
AGCGGCTGGTGAAGCACGCCACGGAGATTAAGGCCTTGCATCTACGGCAT
CTGATTCAAGATCCGGTGCGTTCGGAGGCGTTGTGTGCGGAGTATGATGG
GATGTATTTCGACTATTCGCGGCAGCAAATGACGGTGGAAACACGTGCCC
TACTAATTGACTTGGCCAAACGCGCGCAAGTGGCAGAGAAAATAGCCGCA
ATGGCCCGCGGGGATAAGATCAACCATACGGAAGGGAGGGCGGCGTTGCA
TATGGCGACACGGGCGGGGAGGGAGGAGAGCATTGTGCTTGATGGGGTGG
ATGTGGTGGCGCAAGTGCATGGAGTCTTGGACAAGGTAAAGGCCTTTTCG
GAGGGGGTGAGGGCAGGGACCATACGCGGGGCGACGGGGAAGAAAATCCG
AAATATCGTTGCAGTCGGCATTGGAGGGAGTTATTTGGGCCCGGCGTGTA
TCCACGAGGTGTTCAAGACGGAGGAGGAGGGCTCCAGTTCATGCCGTGAT
TTCCGATTGAGGTTCCTCTCGAACGTCGATCCTGTAGACGTGGCACGGGC
GCAGGAGAAGCTGGACCCGGAGGAGACCCTGGTAATAGTAGTGAGCAAGT
CGTTCGTGACCGCCGAGACCATGTTGAATGCGCGGACGATGCGTCAGTGG
CTGTGGGATGGCATGGGAAAAGACCCAGAGGTTTGCGCGAAGCATATGGC
GGCGTGTGCCTCGGCGTCGGCGACGCATTTGGTGGAGGAATTCGGGATCC
CTAGCCACAGGCTATTTGAGTTTTGGGATTGGGTTGGGGGGAGGTATAGC
GTGTGTGCGTCTCCCGGGGCCTTGCCAATTTCGTTGAAGTTCGGATATGA
GGTGTTTGAGAAATTTCTGGCAGGTGCCCGGAGCATGGATCGGCATTTTT
TGACGGCGCCGTTTGAGAGGAATCTGCCGGTGCTGATGGGGTTGTTGGGC
GTCTGGAACATGAGTTTCCTTGGATACAAGTGCCGGACGATCATACCCTA
TGCGGAAGCCATGATGAAATTCCCCGCGCACATCCAGCAGGTGGACATGG
AGAGTAATGGGAAGCATGTGACGGTGGATGGAGAAGAGATCAATTACGAA
ATTGGCGAGATTGACTTTGGAGAGCCGGGCACCAATGGCCAGCATTCGTT
CTTCCAGTTGCTGCACATGGGCCAAGTAGTCCCTGTGGACTTCATTGGCT
TTGCGGAGAGCCAGAAGGCATTGCATGTGGTGGGGGAGGAGCTGTCGTCG
CACGACGAGTTGATGTGCAACTTTTTCGCGCAGCCCGATGCCTTGGCCAT
TGGTAAGACAAGCGCGGAGCTCCTGGCTGATGGTGTTTTGCCTCAGCATG
TTCCCCATCGGACTTTCAAGGGGAACCGACCCTCCCTCTCTCTCCTACTT
CCTCGCTTGAATGCTTACTCCATGGGTCAACTCTTGGCGTTGTATGAGCA
CAGGACGGCGGTGCAAGGTTTTGTGTGGCACGTCAATTCCTTCGACCAAT
GGGGGGTGGAGCTAGGGAAGCAGCTCGCGACGCATGTGAGGGATGAGATG
AAATTGGCTCGGTCGGGGAAAGCTGCAAACTTGCATGCACTCGTCCCGGC
AACGGCAAGGATTCTGCAACGGTACTGGGCAGGGGGAGGGAGTGGGGGAG
GGAAGGAGGAGAAGGTTGCGGTCGAGCAGGAGAAGGAGGGGAAACAGCAC
CATTAG

Synonyms

Publications