jgi.p|Nanoce1779_2|627593, mRNA_53 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627593
Unique Name	mRNA_53
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2074
Alignment location	scaffold_3:146144..148217 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627679
Track	FilteredModels2
ProteinId	627593

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:146144..148217 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627593	gene_53	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627593	mRNA_53-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_53	CDS_53	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:146144..148217+
coding sequence from alignment at scaffold_3:146144..148217+

mRNA sequence

>mRNA_53 ID=mRNA_53|Name=jgi.p|Nanoce1779_2|627593|organism=Nannochloropsis oceanica|type=mRNA|length=2074bp
CCCCCTGCCCCCACCACTAGAGACCCCGTCACGCACAGCGCTGATAGAGC
CATGTTTCCCCTCGTCTTAACTTCCCAGCACACACTCGCCGGTGACCCTA
CTCTCCATCCCCTCAGCACTCCGTACGCACTGCCCGCAATCAACGTGGTG
GTCCTCCGTCCCTCTATCCCGCCTTTTCCCCCGGACGAGAAACACACCAG
GGAGTGATTCCCTCCCGCCGCGCCCTTGACCCGGTGGCCGACTTTGAAGA
TGGAGGTAGGGAGGGAGGAGAAGGAGGCGAGATCGTAGAGATAAACCTCG
GGCCAGTGCCAGAAGGCGACTGCCAGGTGAGTATCTTGCTCCGCGTTCCA
TTCCACAGCCGAAACGGCCTTGCGTGGCTCCAGCGTGAGCAAGGGAGGGT
GCTGCTGCTGCTGCCGTTGATACTGCTGCTCTTGTAGCAGCTGCTGTTGA
CGCTGCCGGGGCAAGTGTTGAAGGTCAGGGAAGCAAGGAGGAAGGGAAGG
AGGGTGGGCAGGGCGGGTGGCAATCACAGAGAGGAATTCATCGAAGTCAA
AAATGCGGACAACGCCGTGAGTGGTCCCAACGGCCAGCAACGCCCCAACG
GCATCGAAACGGAGGACCGACGGCGGGTCGGTGACACTGGTGCTCGTTCG
CCCTTCAGCCAGGCCCGTGATGGAACGAGGGTGCGGGTGAGGGAGGGAGG
GGGGGAGAGTGGTGGAGAAGGGGCGGAGGCGGTGTGTGAGGAGAGTGCGG
ATAGCGAAACGGGTACGTGACCGTTGAGTGTTGGTTTGAAAGTGGGTAAA
AAATTGCCGCCAGTGACGCAGGCGGGGGGGATGTGGGGGAGGGATGGGAA
GAGGGAGGGCGGGGCAGCGGAGGGGGGGAGGAGTTGGGCGGAGGAAGGCG
AGGATACCGCGTTTGGTGGTGGTGGTGGTGGTGGTTGTATTGCTGTTGCT
GCTGTTGTTGTTGTTAGTGCTGGTGCCATCGTCGTCGGCGAATGATGCCC
GCCAGCTCTCAGTGTCCACGAAGTCGCCGAGGGCGGGGGAGGGGGCTGGA
GAAAGGGAGGGATTCATGACCGCGGCTGCCGGGGCCACATATGTGACTGC
TGCTACGTCTGCTGGTGCTGGTGCTGCTTTTTCTGCTGGTGCCTCAGCTC
CTGGTAGAATATCTGGTTCTACTACCGACGAGGAAGATAATGGCATGGGT
GGTAGTATTTGATTTGGCACCCCTTTCCGATCTTGCTCGTTCTCTTGGCG
TGATGCTCCTGCTGCCGTGACCGTTGCTAGTGCTGGTGCTCCTGCTGCTG
CTGTCATTTCAACCCTTTTGCTTCCTCCTCCCCCCCCCCCCTCCTTCGAC
TTCAATCGCCTTTTTTTTACGCCGAGTCAAAGATAGCAATGTGGAGGACT
GTGCCATCGCGACCGGAAGACTGCGCGAAGACATTTGTAGTAATCGGCTC
AAAAAAGGGTCATCGTCTTCTTCCTGATGCAGCTGCTTCTGCTGTAATTG
CGCATCCCTTGGTGCTGCGGCTGTAGATGATTCATCTTTCTTGTCCGAAC
GATGACGCTTCCTACTGCCGAGCTGGGTCTGGGGCTGGTGCTGGGGAAGA
TGAGGTGGAGTGGGGGGAGGAGGCGTGGGTGCAGGAGGGATGATCTCAGG
CTCCTCTCGGAGGCGCACGCCCTTTCTTCCCATTGCTCCACTTCTGGATT
GCGTTATGGTCCTCCTCGGTGGCAACGTCGCGGCGGCAGCTTCTGCATCT
ACTCCTGTCCGTAGCGGTAGTGCTGCTGGTGCCGCTGTAGCGGGTTTATT
GCCCTTGCCGCTGCTGCTGCCGCCGAAGAAGGAGAGGATGGAGCCGCTCC
CTGTGATTGGCGGCGCAGGGGCTTTCTTGCGTCCGCCACCGCCACCATCA
CCGCGCTCCATGGCACCCCAGACCTCGATGGTACCGGTGGATATGTGTGG
GGAGGTGTGGCATGATTAAAGTTAGGTGGAAAAAAGAGAGAGTAGGAACG
CAAAATCGCTGCGGCTTTCCTTGGCGAGGCATGGGACGGGCCGCTCGGGC
CCCGGGGTCAGACACGAGAGAGCG

protein sequence of jgi.p|Nanoce1779_2|627593

>mRNA_53-protein ID=mRNA_53-protein|Name=jgi.p|Nanoce1779_2|627593|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MGRGRAGQRRGGGVGRRKARIPRLVVVVVVVVLLLLLLLLLVLVPSSSAN
DARQLSVSTKSPRAGEGAGEREGFMTAAAGATYVTAATSAGAGAAFSAGA
SAPGRISGSTTDEEDNGMGGSI*

mRNA from alignment at scaffold_3:146144..148217+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_53 ID=mRNA_53|Name=jgi.p|Nanoce1779_2|627593|organism=Nannochloropsis oceanica|type=mRNA|length=2074bp|location=Sequence derived from alignment at scaffold_3:146144..148217+ (Nannochloropsis oceanica)
CCCCCTGCCCCCACCACTAGAGACCCCGTCACGCACAGCGCTGATAGAGC
CATGTTTCCCCTCGTCTTAACTTCCCAGCACACACTCGCCGGTGACCCTA
CTCTCCATCCCCTCAGCACTCCGTACGCACTGCCCGCAATCAACGTGGTG
GTCCTCCGTCCCTCTATCCCGCCTTTTCCCCCGGACGAGAAACACACCAG
GGAGTGATTCCCTCCCGCCGCGCCCTTGACCCGGTGGCCGACTTTGAAGA
TGGAGGTAGGGAGGGAGGAGAAGGAGGCGAGATCGTAGAGATAAACCTCG
GGCCAGTGCCAGAAGGCGACTGCCAGGTGAGTATCTTGCTCCGCGTTCCA
TTCCACAGCCGAAACGGCCTTGCGTGGCTCCAGCGTGAGCAAGGGAGGGT
GCTGCTGCTGCTGCCGTTGATACTGCTGCTCTTGTAGCAGCTGCTGTTGA
CGCTGCCGGGGCAAGTGTTGAAGGTCAGGGAAGCAAGGAGGAAGGGAAGG
AGGGTGGGCAGGGCGGGTGGCAATCACAGAGAGGAATTCATCGAAGTCAA
AAATGCGGACAACGCCGTGAGTGGTCCCAACGGCCAGCAACGCCCCAACG
GCATCGAAACGGAGGACCGACGGCGGGTCGGTGACACTGGTGCTCGTTCG
CCCTTCAGCCAGGCCCGTGATGGAACGAGGGTGCGGGTGAGGGAGGGAGG
GGGGGAGAGTGGTGGAGAAGGGGCGGAGGCGGTGTGTGAGGAGAGTGCGG
ATAGCGAAACGGGTACGTGACCGTTGAGTGTTGGTTTGAAAGTGGGTAAA
AAATTGCCGCCAGTGACGCAGGCGGGGGGGATGTGGGGGAGGGATGGGAA
GAGGGAGGGCGGGGCAGCGGAGGGGGGGAGGAGTTGGGCGGAGGAAGGCG
AGGATACCGCGTTTGGTGGTGGTGGTGGTGGTGGTTGTATTGCTGTTGCT
GCTGTTGTTGTTGTTAGTGCTGGTGCCATCGTCGTCGGCGAATGATGCCC
GCCAGCTCTCAGTGTCCACGAAGTCGCCGAGGGCGGGGGAGGGGGCTGGA
GAAAGGGAGGGATTCATGACCGCGGCTGCCGGGGCCACATATGTGACTGC
TGCTACGTCTGCTGGTGCTGGTGCTGCTTTTTCTGCTGGTGCCTCAGCTC
CTGGTAGAATATCTGGTTCTACTACCGACGAGGAAGATAATGGCATGGGT
GGTAGTATTTGATTTGGCACCCCTTTCCGATCTTGCTCGTTCTCTTGGCG
TGATGCTCCTGCTGCCGTGACCGTTGCTAGTGCTGGTGCTCCTGCTGCTG
CTGTCATTTCAACCCTTTTGCTTCCTCCTCCCCCCCCCCCCTCCTTCGAC
TTCAATCGCCTTTTTTTTACGCCGAGTCAAAGATAGCAATGTGGAGGACT
GTGCCATCGCGACCGGAAGACTGCGCGAAGACATTTGTAGTAATCGGCTC
AAAAAAGGGTCATCGTCTTCTTCCTGATGCAGCTGCTTCTGCTGTAATTG
CGCATCCCTTGGTGCTGCGGCTGTAGATGATTCATCTTTCTTGTCCGAAC
GATGACGCTTCCTACTGCCGAGCTGGGTCTGGGGCTGGTGCTGGGGAAGA
TGAGGTGGAGTGGGGGGAGGAGGCGTGGGTGCAGGAGGGATGATCTCAGG
CTCCTCTCGGAGGCGCACGCCCTTTCTTCCCATTGCTCCACTTCTGGATT
GCGTTATGGTCCTCCTCGGTGGCAACGTCGCGGCGGCAGCTTCTGCATCT
ACTCCTGTCCGTAGCGGTAGTGCTGCTGGTGCCGCTGTAGCGGGTTTATT
GCCCTTGCCGCTGCTGCTGCCGCCGAAGAAGGAGAGGATGGAGCCGCTCC
CTGTGATTGGCGGCGCAGGGGCTTTCTTGCGTCCGCCACCGCCACCATCA
CCGCGCTCCATGGCACCCCAGACCTCGATGGTACCGGTGGATATGTGTGG
GGAGGTGTGGCATGATTAAAGTTAGGTGGAAAAAAGAGAGAGTAGGAACG
CAAAATCGCTGCGGCTTTCCTTGGCGAGGCATGGGACGGGCCGCTCGGGC
CCCGGGGTCAGACACGAGAGAGCG

Coding sequence (CDS) from alignment at scaffold_3:146144..148217+

>mRNA_53 ID=mRNA_53|Name=jgi.p|Nanoce1779_2|627593|organism=Nannochloropsis oceanica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_3:146144..148217+ (Nannochloropsis oceanica)
ATGGGAAGAGGGAGGGCGGGGCAGCGGAGGGGGGGAGGAGTTGGGCGGAG
GAAGGCGAGGATACCGCGTTTGGTGGTGGTGGTGGTGGTGGTTGTATTGC
TGTTGCTGCTGTTGTTGTTGTTAGTGCTGGTGCCATCGTCGTCGGCGAAT
GATGCCCGCCAGCTCTCAGTGTCCACGAAGTCGCCGAGGGCGGGGGAGGG
GGCTGGAGAAAGGGAGGGATTCATGACCGCGGCTGCCGGGGCCACATATG
TGACTGCTGCTACGTCTGCTGGTGCTGGTGCTGCTTTTTCTGCTGGTGCC
TCAGCTCCTGGTAGAATATCTGGTTCTACTACCGACGAGGAAGATAATGG
CATGGGTGGTAGTATTTGA

Synonyms

Publications