jgi.p|Nanoce1779_2|592050, mRNA_5298 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592050
Unique Name	mRNA_5298
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1952
Alignment location	scaffold_13:103063..105014 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592136
Track	FilteredModels2
ProteinId	592050

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:103063..105014 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592050	gene_5298	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592050	mRNA_5298-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5298	CDS_5298	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:103063..105014-
coding sequence from alignment at scaffold_13:103063..105014-

mRNA sequence

>mRNA_5298 ID=mRNA_5298|Name=jgi.p|Nanoce1779_2|592050|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp
AATGGAGGGGAAGGAGGAGCCTGAGCTCTGGGCCCGTGTGACGGGGAAGC
TTCCTCGGACTGCAAATGGGTTGTACGCCCCGCCTTTCATTGCGAATTTG
TCCGATTACGATGTGCGGTACGTGTCCTTGTCCTCGGTGGGGCGAAGCTT
GCCTTATCGAGGGTACCAGACTTTGCATGATGCCGATATCACGGAGCATT
ATTTACGAGAAATAGGCCCCCAATGGCTTGAAGACCGAAAATTCACGCTC
TGGTTCGGACCACCGCACGTCGAGGTGGAGAAAGAAGGAACTTTCTCGTC
TTCTTCCTCCTCGTCGCCCTCACCATTGCGCCCGGCAGTGGTGGCGGATG
AGAAGGCGTTGTTCTTGCCGTGGGGGAGGAGTTTCGAAGGAGGACTCATC
CCTTTCCCGGGAGTGCTGTACAGACAGATTCTGTCACGAGGCCAGGTTTT
GAAGTCGATGAGGGCGGGAGGTCGGACTGGAGGTAGGACAAATAGTAGAC
AAAGCAGTGAAAAGAAAGGAGAGTCAGAGCGGAGCTGTCCTTCGCATGCG
GCTGTTACAAGTGTGGCTCCTGCCGCAGCAGGAGCAGGAGCAGCGGCAAC
AGTGGCTGGTTCACCGACGGCAAGTCTTGCGGAGATTATTCCCCCGACAT
GTGAGAGGTGGGAAGAAGAAATAGTTAAAGAGGAGGAGGACCAACCTTTG
CATGTTGTAGGCAAGCATATGTGTTGCGGTTCCTCGGCTCCGGAATGGTG
TCATGATCCTGGTTTTGTGGCGAGCAAAATGAAAAGTTTTTATCCCTTGG
TTGAGTATTATCATCGGCACCCTAAGCGAGGGCGAGGAAATAAAAAGGGC
AAGGTGGACGAGGATGATGTGATGGAGAGGATTGGTGGGGAGGATGACGA
TTGCCGAAAAATGACACTGGTGAAGGAAGAGGAGTCGTTTCAGCCATCGT
GTGTTGAGAAAGAACAGGCGGAAATTAGTGGAAAGGAAGAAAGGGAGGAA
AGAGAGGTGTCGTTGTCGATGGAGGAGATGGCGGGTTCGTATTTAAATTT
AGTGAGTGACATTTGGACCATAATTTATTCATACATACTCTTTTGGGGTA
GTGAGAGAGGGCGGAGGTGATGAGGGGATATAATGTGATATAATTTCTCT
GTTTCTTATTTTTGAAAGGAGACAAGAAATAAGGGGCAGGAGGCCAAGAG
CAATTGAAATGACATCTGTAAATAAGCTGTTTGTGTGCATACACGCTTTC
TACATGGGAATTAAGATATATGGTACAGAATACCACTCCAACTGGTTGGT
GAGTAACGAAGGCGTGAAAGGAACAGAGTTCGACAAGATGAAAATCACCA
TGGTCATATTTACAATAACCTACGGTACTGACATGAAATATGTGAATCAA
AAAATGAAGAAATCACATGCACGTAAAAGAAGGGAAAAAATAGGCCAACC
CGGCCACTTTAAGGTCAGTGTGTTTTGGGCAGCGGCGGCGTAATATGCAC
TTTCCCGCCAATGAACCTGGCATTTTTGAAGAGCCGCAATCCTGCCAAAC
TAAATGTACAATGGTAATGACAGGCGAAGCGAACAGAAGTAGACATCTCT
GCTTGGGGAACAGTTTGGGGGTGCGATCCGAGGAAGAGGACGTTTATTAC
CTCAACTCAACTCCGGCACCAATATTAAATAGAGCATATTTGCAAGCTTA
GGGCTGCCAAGAAACGCAACTAGCATAGGAAGTAGAGGTATTTTAGTTTC
CAAACTTTCGTCAAAGGTTTGTTATACCAGGCGGTTAGATGAAAGTGTTC
GTCACAATCGCTGTTATTTGCTGCCGTGCCTTTTTTTTTCCCACCGCCAC
CATATCACACCAGCACAGGTTGAAAATAAGCTCTTCACGACACTGCCGTC
CTCCATGGGCGCTTCTATTGTTGTCCTTGATTATATACGGTAGGGGGGAA
AA

protein sequence of jgi.p|Nanoce1779_2|592050

>mRNA_5298-protein ID=mRNA_5298-protein|Name=jgi.p|Nanoce1779_2|592050|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MEGKEEPELWARVTGKLPRTANGLYAPPFIANLSDYDVRYVSLSSVGRSL
PYRGYQTLHDADITEHYLREIGPQWLEDRKFTLWFGPPHVEVEKEGTFSS
SSSSSPSPLRPAVVADEKALFLPWGRSFEGGLIPFPGVLYRQILSRGQVL
KSMRAGGRTGGRTNSRQSSEKKGESERSCPSHAAVTSVAPAAAGAGAAAT
VAGSPTASLAEIIPPTCERWEEEIVKEEEDQPLHVVGKHMCCGSSAPEWC
HDPGFVASKMKSFYPLVEYYHRHPKRGRGNKKGKVDEDDVMERIGGEDDD
CRKMTLVKEEESFQPSCVEKEQAEISGKEEREEREVSLSMEEMAGSYLNL
VSDIWTIIYSYILFWGSERGRR*

mRNA from alignment at scaffold_13:103063..105014-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5298 ID=mRNA_5298|Name=jgi.p|Nanoce1779_2|592050|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at scaffold_13:103063..105014- (Nannochloropsis oceanica)
AATGGAGGGGAAGGAGGAGCCTGAGCTCTGGGCCCGTGTGACGGGGAAGC
TTCCTCGGACTGCAAATGGGTTGTACGCCCCGCCTTTCATTGCGAATTTG
TCCGATTACGATGTGCGGTACGTGTCCTTGTCCTCGGTGGGGCGAAGCTT
GCCTTATCGAGGGTACCAGACTTTGCATGATGCCGATATCACGGAGCATT
ATTTACGAGAAATAGGCCCCCAATGGCTTGAAGACCGAAAATTCACGCTC
TGGTTCGGACCACCGCACGTCGAGGTGGAGAAAGAAGGAACTTTCTCGTC
TTCTTCCTCCTCGTCGCCCTCACCATTGCGCCCGGCAGTGGTGGCGGATG
AGAAGGCGTTGTTCTTGCCGTGGGGGAGGAGTTTCGAAGGAGGACTCATC
CCTTTCCCGGGAGTGCTGTACAGACAGATTCTGTCACGAGGCCAGGTTTT
GAAGTCGATGAGGGCGGGAGGTCGGACTGGAGGTAGGACAAATAGTAGAC
AAAGCAGTGAAAAGAAAGGAGAGTCAGAGCGGAGCTGTCCTTCGCATGCG
GCTGTTACAAGTGTGGCTCCTGCCGCAGCAGGAGCAGGAGCAGCGGCAAC
AGTGGCTGGTTCACCGACGGCAAGTCTTGCGGAGATTATTCCCCCGACAT
GTGAGAGGTGGGAAGAAGAAATAGTTAAAGAGGAGGAGGACCAACCTTTG
CATGTTGTAGGCAAGCATATGTGTTGCGGTTCCTCGGCTCCGGAATGGTG
TCATGATCCTGGTTTTGTGGCGAGCAAAATGAAAAGTTTTTATCCCTTGG
TTGAGTATTATCATCGGCACCCTAAGCGAGGGCGAGGAAATAAAAAGGGC
AAGGTGGACGAGGATGATGTGATGGAGAGGATTGGTGGGGAGGATGACGA
TTGCCGAAAAATGACACTGGTGAAGGAAGAGGAGTCGTTTCAGCCATCGT
GTGTTGAGAAAGAACAGGCGGAAATTAGTGGAAAGGAAGAAAGGGAGGAA
AGAGAGGTGTCGTTGTCGATGGAGGAGATGGCGGGTTCGTATTTAAATTT
AGTGAGTGACATTTGGACCATAATTTATTCATACATACTCTTTTGGGGTA
GTGAGAGAGGGCGGAGGTGATGAGGGGATATAATGTGATATAATTTCTCT
GTTTCTTATTTTTGAAAGGAGACAAGAAATAAGGGGCAGGAGGCCAAGAG
CAATTGAAATGACATCTGTAAATAAGCTGTTTGTGTGCATACACGCTTTC
TACATGGGAATTAAGATATATGGTACAGAATACCACTCCAACTGGTTGGT
GAGTAACGAAGGCGTGAAAGGAACAGAGTTCGACAAGATGAAAATCACCA
TGGTCATATTTACAATAACCTACGGTACTGACATGAAATATGTGAATCAA
AAAATGAAGAAATCACATGCACGTAAAAGAAGGGAAAAAATAGGCCAACC
CGGCCACTTTAAGGTCAGTGTGTTTTGGGCAGCGGCGGCGTAATATGCAC
TTTCCCGCCAATGAACCTGGCATTTTTGAAGAGCCGCAATCCTGCCAAAC
TAAATGTACAATGGTAATGACAGGCGAAGCGAACAGAAGTAGACATCTCT
GCTTGGGGAACAGTTTGGGGGTGCGATCCGAGGAAGAGGACGTTTATTAC
CTCAACTCAACTCCGGCACCAATATTAAATAGAGCATATTTGCAAGCTTA
GGGCTGCCAAGAAACGCAACTAGCATAGGAAGTAGAGGTATTTTAGTTTC
CAAACTTTCGTCAAAGGTTTGTTATACCAGGCGGTTAGATGAAAGTGTTC
GTCACAATCGCTGTTATTTGCTGCCGTGCCTTTTTTTTTCCCACCGCCAC
CATATCACACCAGCACAGGTTGAAAATAAGCTCTTCACGACACTGCCGTC
CTCCATGGGCGCTTCTATTGTTGTCCTTGATTATATACGGTAGGGGGGAA
AA

Coding sequence (CDS) from alignment at scaffold_13:103063..105014-

>mRNA_5298 ID=mRNA_5298|Name=jgi.p|Nanoce1779_2|592050|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at scaffold_13:103063..105014- (Nannochloropsis oceanica)
ATGGAGGGGAAGGAGGAGCCTGAGCTCTGGGCCCGTGTGACGGGGAAGCT
TCCTCGGACTGCAAATGGGTTGTACGCCCCGCCTTTCATTGCGAATTTGT
CCGATTACGATGTGCGGTACGTGTCCTTGTCCTCGGTGGGGCGAAGCTTG
CCTTATCGAGGGTACCAGACTTTGCATGATGCCGATATCACGGAGCATTA
TTTACGAGAAATAGGCCCCCAATGGCTTGAAGACCGAAAATTCACGCTCT
GGTTCGGACCACCGCACGTCGAGGTGGAGAAAGAAGGAACTTTCTCGTCT
TCTTCCTCCTCGTCGCCCTCACCATTGCGCCCGGCAGTGGTGGCGGATGA
GAAGGCGTTGTTCTTGCCGTGGGGGAGGAGTTTCGAAGGAGGACTCATCC
CTTTCCCGGGAGTGCTGTACAGACAGATTCTGTCACGAGGCCAGGTTTTG
AAGTCGATGAGGGCGGGAGGTCGGACTGGAGGTAGGACAAATAGTAGACA
AAGCAGTGAAAAGAAAGGAGAGTCAGAGCGGAGCTGTCCTTCGCATGCGG
CTGTTACAAGTGTGGCTCCTGCCGCAGCAGGAGCAGGAGCAGCGGCAACA
GTGGCTGGTTCACCGACGGCAAGTCTTGCGGAGATTATTCCCCCGACATG
TGAGAGGTGGGAAGAAGAAATAGTTAAAGAGGAGGAGGACCAACCTTTGC
ATGTTGTAGGCAAGCATATGTGTTGCGGTTCCTCGGCTCCGGAATGGTGT
CATGATCCTGGTTTTGTGGCGAGCAAAATGAAAAGTTTTTATCCCTTGGT
TGAGTATTATCATCGGCACCCTAAGCGAGGGCGAGGAAATAAAAAGGGCA
AGGTGGACGAGGATGATGTGATGGAGAGGATTGGTGGGGAGGATGACGAT
TGCCGAAAAATGACACTGGTGAAGGAAGAGGAGTCGTTTCAGCCATCGTG
TGTTGAGAAAGAACAGGCGGAAATTAGTGGAAAGGAAGAAAGGGAGGAAA
GAGAGGTGTCGTTGTCGATGGAGGAGATGGCGGGTTCGTATTTAAATTTA
GTGAGTGACATTTGGACCATAATTTATTCATACATACTCTTTTGGGGTAG
TGAGAGAGGGCGGAGGTGA

Synonyms

Publications