jgi.p|Nanoce1779_2|592049, mRNA_5297 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592049
Unique Name	mRNA_5297
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2401
Alignment location	scaffold_13:100750..103150 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592135
Track	FilteredModels2
ProteinId	592049

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:100750..103150 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592049	gene_5297	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592049	mRNA_5297-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5297	CDS_5297	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:100750..103150-
coding sequence from alignment at scaffold_13:100750..103150-

mRNA sequence

>mRNA_5297 ID=mRNA_5297|Name=jgi.p|Nanoce1779_2|592049|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
ACAGGTTGAAAATAAGCTCTTCACGACACTGCCGTCCTCCATGGGCGCTT
CTATTGTTGTCCTTGATTATATACGGTAGGGGGGAAAACACTGCATGTGC
TTTCTTTCTCCGTCAGGCAGCAGAAGGTCCACGGTACCCCCTTGCCCCCA
GGGCTTCACCCGCCGTTTTCACCCACCTCGTGCACTTCCGCCGTCATGTC
CACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGGTGTGT
GGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAGACCCA
CTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAAAGCTT
TGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCGGGTAT
GGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCGGACTC
GTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTACGGCA
GGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCATTCCGG
ACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAAAGGGT
GGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAACGGCAG
CACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATACACAG
CCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGGAAGCC
GCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAGGAGTA
TTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTGCGAGG
AGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGGGGCTG
GACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTTGGGAC
AGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAGTGGGG
CAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAACATGGA
CAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAAGATGA
AGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGCCGGGA
CTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACCACCAC
CTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATCGTCAC
GGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCAAGTGG
GTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTGTCTTC
CCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTGGTCTT
GGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGCAGAGG
AAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAGGTGGA
GTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAGCTTCG
TTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGACGCAGG
ATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGCTGCCG
GTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTGAAGGT
GTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCGGGTGT
GGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGAAAGAG
GAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTCCAATG
GCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGATGTGG
CGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGGTTTGG
GGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGGAATAC
AGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTTATTAC
CATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTGCATGT
GGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGGGCGTG
TGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGACCGAG
GAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGGGGGCA
GCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTAAAGGA
AAGAGTGGGTTTACAAACGGAGGAGAAATGAAATGATGAAAGACATTGAG
TGAATATACCGATGTGATGGTCAGGGAATTGAACAGAAAATATTCAGGGA
G

protein sequence of jgi.p|Nanoce1779_2|592049

>mRNA_5297-protein ID=mRNA_5297-protein|Name=jgi.p|Nanoce1779_2|592049|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MSTSTSTPSRQWDAAQGVWVGSRALADEADEIPDPLYIFGYGSLMFRPQE
SFAACERVGGVVEGWRRVWAQRSCDHRGEPHMPGLVVTVLSDAELEGMDL
RQATDPPSRVHGVAYRIPDEQVAHVLDELDFREKGGYTRAVVEVLPTHSN
GSTSTGNNGGSIKALLYTANAENPNFHHPTTLEEAAHIVAWSRGPSGENK
EYLFEVDAYLRRVGAECEETFLLTRRVKEVLEKGLDRRGSLDARHRQILV
GTAKGEGEGKGEPARGSGAVWQQLRLLAWGSNQHGQLGRRQVHGAVQTQE
DEEWPCPSPTSVDLDVAGTVSFQGGSLATALVDHHLTIRQLAAGGGHSAI
VTDEDRLYLWGWNEKGQVGGGKHTILDGTRCVRVFPRRVAMVALGHAHTL
VLEKDTGKIYGIGANAAEEATGSSSCSSTCRAIGGVPVTLSGAFGGGKEQ
LRFSWCAAGVRHSAGVTQDGRLVTWGSNKYGEGLPVSVRSWAPGDGGRVV
KVCCGWQHTVVLDDRGRVWTMGANKYGQLGWGWKEEMGREDEVAGLPQQV
QWPTAVDEGGEGRWVEDVACGWSHVLAKTRDGQVWGWGRNTFGQLAQESR
NTAIAAAAAGNLFPRRLLPLPGCLPHGARVREIACGTESSALVGDDGSVW
ACGWNEHGNLGVGDKKDRGVWTRVLGFPTREEEGAARMLVACGGAHVLAV
KERVGLQTEEK*

mRNA from alignment at scaffold_13:100750..103150-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5297 ID=mRNA_5297|Name=jgi.p|Nanoce1779_2|592049|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at scaffold_13:100750..103150- (Nannochloropsis oceanica)
ACAGGTTGAAAATAAGCTCTTCACGACACTGCCGTCCTCCATGGGCGCTT
CTATTGTTGTCCTTGATTATATACGGTAGGGGGGAAAACACTGCATGTGC
TTTCTTTCTCCGTCAGGCAGCAGAAGGTCCACGGTACCCCCTTGCCCCCA
GGGCTTCACCCGCCGTTTTCACCCACCTCGTGCACTTCCGCCGTCATGTC
CACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGGTGTGT
GGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAGACCCA
CTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAAAGCTT
TGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCGGGTAT
GGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCGGACTC
GTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTACGGCA
GGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCATTCCGG
ACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAAAGGGT
GGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAACGGCAG
CACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATACACAG
CCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGGAAGCC
GCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAGGAGTA
TTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTGCGAGG
AGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGGGGCTG
GACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTTGGGAC
AGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAGTGGGG
CAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAACATGGA
CAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAAGATGA
AGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGCCGGGA
CTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACCACCAC
CTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATCGTCAC
GGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCAAGTGG
GTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTGTCTTC
CCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTGGTCTT
GGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGCAGAGG
AAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAGGTGGA
GTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAGCTTCG
TTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGACGCAGG
ATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGCTGCCG
GTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTGAAGGT
GTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCGGGTGT
GGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGAAAGAG
GAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTCCAATG
GCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGATGTGG
CGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGGTTTGG
GGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGGAATAC
AGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTTATTAC
CATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTGCATGT
GGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGGGCGTG
TGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGACCGAG
GAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGGGGGCA
GCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTAAAGGA
AAGAGTGGGTTTACAAACGGAGGAGAAATGAAATGATGAAAGACATTGAG
TGAATATACCGATGTGATGGTCAGGGAATTGAACAGAAAATATTCAGGGA
G

Coding sequence (CDS) from alignment at scaffold_13:100750..103150-

>mRNA_5297 ID=mRNA_5297|Name=jgi.p|Nanoce1779_2|592049|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_13:100750..103150- (Nannochloropsis oceanica)
ATGTCCACATCCACGAGTACACCCTCACGGCAATGGGACGCGGCCCAAGG
TGTGTGGGTTGGCTCGCGAGCGCTGGCGGACGAGGCGGATGAAATTCCAG
ACCCACTGTACATTTTTGGGTACGGCTCGCTCATGTTTCGGCCCCAAGAA
AGCTTTGCCGCTTGTGAGCGTGTAGGTGGCGTGGTGGAGGGTTGGCGGCG
GGTATGGGCGCAGCGGAGTTGTGATCATAGAGGGGAGCCGCACATGCCCG
GACTCGTTGTGACGGTCTTGAGCGACGCTGAGCTGGAAGGTATGGATCTA
CGGCAGGCGACGGACCCACCATCCCGCGTGCATGGTGTCGCGTACCGCAT
TCCGGACGAGCAGGTGGCTCACGTGTTGGACGAACTGGATTTTCGGGAAA
AGGGTGGGTATACGCGGGCGGTGGTGGAAGTGCTTCCTACTCATTCGAAC
GGCAGCACCAGCACTGGCAATAACGGCGGCTCTATCAAAGCTTTGTTATA
CACAGCCAACGCCGAAAACCCCAATTTCCATCATCCCACCACGTTAGAGG
AAGCCGCACACATTGTCGCCTGGTCACGTGGACCGTCGGGCGAAAACAAG
GAGTATTTATTCGAGGTGGATGCTTACTTGCGGCGGGTCGGCGCGGAGTG
CGAGGAGACCTTTCTGCTGACGAGACGGGTGAAGGAGGTGTTGGAGAAGG
GGCTGGACAGGAGGGGAAGTTTGGATGCACGGCACCGGCAGATCCTGGTT
GGGACAGCGAAAGGAGAAGGAGAAGGGAAAGGAGAGCCAGCGAGAGGAAG
TGGGGCAGTATGGCAGCAGCTGAGACTTCTGGCGTGGGGGTCGAATCAAC
ATGGACAGCTAGGAAGAAGGCAGGTGCATGGCGCGGTGCAGACGCAAGAA
GATGAAGAATGGCCCTGTCCGTCACCGACTTCGGTGGATTTAGACGTCGC
CGGGACTGTCTCCTTCCAGGGAGGCTCCCTCGCTACAGCTCTGGTCGACC
ACCACCTCACCATCCGTCAGCTCGCGGCAGGCGGGGGACACAGTGCGATC
GTCACGGACGAAGACAGATTGTACCTCTGGGGATGGAATGAAAAAGGGCA
AGTGGGTGGAGGGAAGCACACAATATTAGATGGTACCCGTTGTGTGCGTG
TCTTCCCTCGACGCGTGGCAATGGTTGCATTGGGGCACGCACATACGTTG
GTCTTGGAGAAGGACACGGGGAAGATTTATGGCATCGGGGCGAACGCTGC
AGAGGAAGCGACAGGGAGCAGCAGCTGTAGCAGCACTTGCCGTGCGATAG
GTGGAGTGCCGGTGACCCTTTCAGGTGCTTTTGGAGGTGGTAAGGAACAG
CTTCGTTTCAGTTGGTGCGCGGCGGGCGTTCGACACTCGGCGGGAGTGAC
GCAGGATGGTCGGCTCGTCACATGGGGTTCGAATAAATATGGAGAGGGGC
TGCCGGTTTCCGTGAGGAGCTGGGCGCCGGGAGATGGAGGGAGGGTGGTG
AAGGTGTGTTGTGGATGGCAGCACACGGTGGTGTTGGATGATCGAGGGCG
GGTGTGGACGATGGGGGCGAATAAATATGGGCAGTTGGGATGGGGGTGGA
AAGAGGAGATGGGGAGGGAGGACGAGGTTGCGGGATTACCGCAGCAGGTC
CAATGGCCTACGGCAGTAGATGAGGGGGGGGAGGGGAGGTGGGTGGAGGA
TGTGGCGTGTGGATGGTCGCATGTACTAGCCAAGACCCGCGATGGGCAGG
TTTGGGGGTGGGGTCGCAATACGTTTGGACAGTTGGCGCAGGAGTCCAGG
AATACAGCAATTGCTGCAGCAGCAGCAGGCAATTTGTTTCCACGCCGTTT
ATTACCATTGCCTGGATGCCTGCCTCATGGGGCGAGGGTGCGGGAGATTG
CATGTGGGACGGAAAGTAGTGCGCTGGTGGGGGATGACGGGTCGGTGTGG
GCGTGTGGCTGGAATGAGCATGGAAATTTAGGGGTGGGAGATAAGAAGGA
CCGAGGAGTTTGGACTAGGGTGCTGGGCTTTCCTACTCGGGAGGAGGAGG
GGGCAGCAAGGATGCTGGTAGCTTGCGGTGGGGCACATGTTCTGGCGGTA
AAGGAAAGAGTGGGTTTACAAACGGAGGAGAAATGA

Synonyms

Publications