jgi.p|Nanoce1779_2|592047, mRNA_5296 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592047
Unique NamemRNA_5296
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1064
Alignment locationscaffold_13:99695..100758 +

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Properties
Property NameValue
TranscriptId592133
TrackFilteredModels2
ProteinId592047
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:99695..100758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592047gene_5296Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592047mRNA_5296-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5296CDS_5296Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5296 ID=mRNA_5296|Name=jgi.p|Nanoce1779_2|592047|organism=Nannochloropsis oceanica|type=mRNA|length=1064bp
CGGGGGGTGGGCCTGGAATCTCAGGGGCAGGGGGGGGGTCCTTGGCGACA
ACAACCATGTTGATGGGCGACTTAGATTTAAAGAAGAGCAATAAGATGTC
CACCACGGGAGAGGCCATAAAGATGACGACAAATGAAATGCATGCGCCGC
GTTCGAGTTTGGGGGGGTCCAGTTCCATGCGGACCTCTGGGAGGGGGATG
AGCATCTCTGACTCCGATGCCAACACGAATAGCACCCGTAAAAGCACCAC
CCGACAGCCCAGCTGGCCTAGCAAGGGTGGAAAGAGTTCCAGAACAGCTT
CCACACCCTCTGTGTCCTCGTCGGATGGGCATGCTACGACGGCGGGCAAG
CTTTCTCGGTCCACCGCACTGTCGGCCATTGCCATGGGTCGCTCGGGGGG
GCCTTCACCTGATATGGTCGTTCGCGGTAATGGGGGTCGCGGGAGGGGAA
GGGGACGGGACGACAGGTTGGTGTCACAGTCGCAGCAGCAGAGTAATGCT
TTGATGCAACAGGAGACGGCGGCGGTGGCCTCGGTTTTGAATGCTGTCTG
CGAGAAAATGGTTGGGGTTGTCTCAGAGAAGACCAAGGCATACTTGGCCA
AGGCGGGGAGGAGGACGGAGAGAAGGGTGTTGGACAAAATGACGAAGTTG
GAGCAAAGGATTGAGATGTTTGACCATGTGCTTGAGCATGCTACTAGTAG
CTCTCGCGAGATCGAGCGGGCGTTGTTGGCTTTGGACGAGGACTTGTCGT
CTGCAAGCAAGCCGCTTCCCGTGGTGGCGGTGGATGGTGCCCCTTGAGGC
GGAGGGCTGGCAATTTGCGAGTCACTGCGCGCTGAGAGAGAGGACAGGAG
ATGAGAAGGGAGGGAAGAAGGGGGGGAGAAGAGGCGGAATAGGAATGTGG
AGAAGGCGCATGAATATTACAGCGCGGGCAACGATGATGTGAAGACTACG
GTACGTAGGAATAGAGCACCTCCCATTGGCCGAGAAAATGATTAGCAAGA
GATACGTCGACGAAAACACATACACGCAAATGTAAAGAAAAAAATATTTA
AATATCTCCCTGAA
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protein sequence of jgi.p|Nanoce1779_2|592047

>mRNA_5296-protein ID=mRNA_5296-protein|Name=jgi.p|Nanoce1779_2|592047|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MLMGDLDLKKSNKMSTTGEAIKMTTNEMHAPRSSLGGSSSMRTSGRGMSI
SDSDANTNSTRKSTTRQPSWPSKGGKSSRTASTPSVSSSDGHATTAGKLS
RSTALSAIAMGRSGGPSPDMVVRGNGGRGRGRGRDDRLVSQSQQQSNALM
QQETAAVASVLNAVCEKMVGVVSEKTKAYLAKAGRRTERRVLDKMTKLEQ
RIEMFDHVLEHATSSSREIERALLALDEDLSSASKPLPVVAVDGAP*
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mRNA from alignment at scaffold_13:99695..100758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5296 ID=mRNA_5296|Name=jgi.p|Nanoce1779_2|592047|organism=Nannochloropsis oceanica|type=mRNA|length=1064bp|location=Sequence derived from alignment at scaffold_13:99695..100758+ (Nannochloropsis oceanica)
CGGGGGGTGGGCCTGGAATCTCAGGGGCAGGGGGGGGGTCCTTGGCGACA
ACAACCATGTTGATGGGCGACTTAGATTTAAAGAAGAGCAATAAGATGTC
CACCACGGGAGAGGCCATAAAGATGACGACAAATGAAATGCATGCGCCGC
GTTCGAGTTTGGGGGGGTCCAGTTCCATGCGGACCTCTGGGAGGGGGATG
AGCATCTCTGACTCCGATGCCAACACGAATAGCACCCGTAAAAGCACCAC
CCGACAGCCCAGCTGGCCTAGCAAGGGTGGAAAGAGTTCCAGAACAGCTT
CCACACCCTCTGTGTCCTCGTCGGATGGGCATGCTACGACGGCGGGCAAG
CTTTCTCGGTCCACCGCACTGTCGGCCATTGCCATGGGTCGCTCGGGGGG
GCCTTCACCTGATATGGTCGTTCGCGGTAATGGGGGTCGCGGGAGGGGAA
GGGGACGGGACGACAGGTTGGTGTCACAGTCGCAGCAGCAGAGTAATGCT
TTGATGCAACAGGAGACGGCGGCGGTGGCCTCGGTTTTGAATGCTGTCTG
CGAGAAAATGGTTGGGGTTGTCTCAGAGAAGACCAAGGCATACTTGGCCA
AGGCGGGGAGGAGGACGGAGAGAAGGGTGTTGGACAAAATGACGAAGTTG
GAGCAAAGGATTGAGATGTTTGACCATGTGCTTGAGCATGCTACTAGTAG
CTCTCGCGAGATCGAGCGGGCGTTGTTGGCTTTGGACGAGGACTTGTCGT
CTGCAAGCAAGCCGCTTCCCGTGGTGGCGGTGGATGGTGCCCCTTGAGGC
GGAGGGCTGGCAATTTGCGAGTCACTGCGCGCTGAGAGAGAGGACAGGAG
ATGAGAAGGGAGGGAAGAAGGGGGGGAGAAGAGGCGGAATAGGAATGTGG
AGAAGGCGCATGAATATTACAGCGCGGGCAACGATGATGTGAAGACTACG
GTACGTAGGAATAGAGCACCTCCCATTGGCCGAGAAAATGATTAGCAAGA
GATACGTCGACGAAAACACATACACGCAAATGTAAAGAAAAAAATATTTA
AATATCTCCCTGAA
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Coding sequence (CDS) from alignment at scaffold_13:99695..100758+

>mRNA_5296 ID=mRNA_5296|Name=jgi.p|Nanoce1779_2|592047|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_13:99695..100758+ (Nannochloropsis oceanica)
ATGTTGATGGGCGACTTAGATTTAAAGAAGAGCAATAAGATGTCCACCAC
GGGAGAGGCCATAAAGATGACGACAAATGAAATGCATGCGCCGCGTTCGA
GTTTGGGGGGGTCCAGTTCCATGCGGACCTCTGGGAGGGGGATGAGCATC
TCTGACTCCGATGCCAACACGAATAGCACCCGTAAAAGCACCACCCGACA
GCCCAGCTGGCCTAGCAAGGGTGGAAAGAGTTCCAGAACAGCTTCCACAC
CCTCTGTGTCCTCGTCGGATGGGCATGCTACGACGGCGGGCAAGCTTTCT
CGGTCCACCGCACTGTCGGCCATTGCCATGGGTCGCTCGGGGGGGCCTTC
ACCTGATATGGTCGTTCGCGGTAATGGGGGTCGCGGGAGGGGAAGGGGAC
GGGACGACAGGTTGGTGTCACAGTCGCAGCAGCAGAGTAATGCTTTGATG
CAACAGGAGACGGCGGCGGTGGCCTCGGTTTTGAATGCTGTCTGCGAGAA
AATGGTTGGGGTTGTCTCAGAGAAGACCAAGGCATACTTGGCCAAGGCGG
GGAGGAGGACGGAGAGAAGGGTGTTGGACAAAATGACGAAGTTGGAGCAA
AGGATTGAGATGTTTGACCATGTGCTTGAGCATGCTACTAGTAGCTCTCG
CGAGATCGAGCGGGCGTTGTTGGCTTTGGACGAGGACTTGTCGTCTGCAA
GCAAGCCGCTTCCCGTGGTGGCGGTGGATGGTGCCCCTTGA
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Synonyms
Publications