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Properties
| Property Name | Value |
|---|
| TranscriptId | 671478 |
| Track | FilteredModels2 |
| ProteinId | 671392 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:88188..90967 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5292 ID=mRNA_5292|Name=jgi.p|Nanoce1779_2|671392|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp
CAATGCGACCGACGGACCCACACTTGTCGTCCTTGAAGGGCGGCCATCGC
TTCATTCTTGCTCCACACATTTTCTTTGTCTCACACAATCGTCACATAAT
TACAGGCAGGGCGTATAGATTGTCTTTTATAAGGTCCTGGAGACCCCACT
GTCTGCCACTCCTGGCGCGTGCTCAAGGCTAATTATTATGCCAAGCGCGA
CGGTTTCCTCCTCCTCTACCTCCTCCTCATCCTTTCTCGGCTGGCCGACC
CTCGCCCGCCCATCCAAGGGTAGCAGCAACAGCAACAGCCAGCCTTTCCT
CTCCACTGCTTCTTCCTACCAGCACTATTCCCCTTCTCCGTCCTTTGAAG
TTCGGGAACTTGGGCCCGGGCTCTTCACCGTTGCCGACGTCTTCACCCAA
CAGCAATGCCGACGCATGCTACAAGCTGCTGAGGCACAAGGCATGACACC
TACTAACCCCCGTAATCTCGCCCCTCCCAAAGGTCATGCATTTCGAAACA
ATGAGCGGCTCTTGGTGCACGACCCGGCATTCGCTGATGAGCTTTTTGAG
TACATGCGGCCGGTGTTGGAGACGATTGTGCGAGTGGAGGACCAGGCTGT
ACCCTGTGGGCTATCACCAGAATTTCGATTTTATCGTTATGTGAAGGACG
CCTGGTTCGGTCCCCACATCGACGAAACGCAATTAAGCGCTGACAAGACC
ATGGAAAGCGAGTTCACCATGCTCGTTTACCTCACGGGCATGGATGATGA
CCCCGTGCTGGACGCAAGCCAAGGCAGACTTATGGGCGGATCGACGCGTT
TCCACCACAATAAGAAAACACCCATTGACGTGGAGCCTCAAACGGGCACG
GTTTGCTTGCATTGGCAATTGCACGATTGTCTGCACGAGGGCCTGCGGGT
GACTGGAGGGGTTAAGTGGCTGTTAAGGACTGATGTGTATTTCCCCAGGT
TGAGTAGTAGCATGCGAATGACGGCCATGAAGACGGGGGGAGGGGAGGGA
GGAAGAAGAGGAGGAGTAGGAAAAAGGGGAGTGAGCTCCTAGGAGACATG
TTTTCGTTCTAGTCATCGTGCTCTTTTGATGAATACGTATATTTTACATT
ACGGTTGCTGTTTTGTCCACGTTGGCCTCCTACCACTCAGCCAGGCCCAC
CACCCCCTCCTCTTTCCATCTCCTCCCTCATCTTCTCTCCTCCTCCGATC
TCCCTTCCTCTTTCCATCTCCTCCCTTGTCTTCTCTCTTCATCTGATCTC
CCTCCCTCTTTCCCGGCTTGGCATGAATCAGGTAAGTCGTCCCGAAATGC
CACCTCGTCATACTCGTCACCTCCAGGCCCGCCTCACGGACCATTTTCTC
AATATCCCGGTTCCATACACATCCCCACCGAGCAGTGTGCCGATGACTGT
TTTTGTCCAATATCGCGTTCAGCCATTGATAATGACTCCGCCCGTGCTCC
AACAACAGAATCTGGCCGTCGTCCTTACACACCCTTTCCATCTCTTGCAA
TGATTGTTGGGGGTCCTCGAATGAGCATAGACCAAAAGTATCGCAGACTG
TGTCGAAGGTACGGCTGGGGAAGCTCATGCGGTTCACGTCCATTCTACCA
AATGTCACATCGCCGCGACGGCTGATGGGGAAAAGGAGGGAAGTAGGGGA
GAGGGCAAGAAAGGGGATGAGGCACAACACCCGATGTTTCACCTGCTTCT
ATCCATGACTCCTTCCCCCCACCCCATTCCGTTTCCCCTCATCGTGTGCG
CCACTCCTAGCATTCTTCCTTCCAAAGAGCAAAAAGCAACTCATCGTGGC
CTTTCATGCTGCGCCCTCTCTGAGCCACCGGCCTCCCATTAATATGTTAT
ACGTACATCTCGCCTTTTTCTTCACATATTACCTTTTCCTCAATTTGCGC
TCAGTCTCAGCCATCATCCCCTCGCACAAATCGATAATCGTCAGCTCCAC
ACTTTGAGGGAAATACTCCAGGTTCCTTCCCGTCCCGCCCGCCACTTCTA
AAACCTTCCCCTTGGCTTCGCGCAACAACCATCGCCGCAACAAGTTTAAG
CCCATAACTGTCTCATCAGTTCCAATCTGCTTGTCGTAGCCCGAGGCCCC
CTCTCGAAAGATTGCCAGACGCTCTTCCTCTGAGAATTGCTTAGGGTTGC
CCTGCTCGTCCTCTGCCTTTTCCCCGAGCTCTTTCTTAGCAGCGTCTTCC
CGTTGGCTCAAGGCCCACCAGTAGCCCCCGCCGATGATGCCCAGGTAACT
TCCGACGCCCAATGTCATGTTTTTGACGGAGACGCGCATGGTGTGGAAGG
TATGGAAGCAAAAGGCAGGAGGTTTTCTTCTCACTTGCGCGGAAAAGGTC
TTGATCTTCGGCCCTCTGGGTGCCTGTCGGGACTGCCTTTGCCTGT back to topprotein sequence of jgi.p|Nanoce1779_2|671392 >mRNA_5292-protein ID=mRNA_5292-protein|Name=jgi.p|Nanoce1779_2|671392|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MPSATVSSSSTSSSSFLGWPTLARPSKGSSNSNSQPFLSTASSYQHYSPS
PSFEVRELGPGLFTVADVFTQQQCRRMLQAAEAQGMTPTNPRNLAPPKGH
AFRNNERLLVHDPAFADELFEYMRPVLETIVRVEDQAVPCGLSPEFRFYR
YVKDAWFGPHIDETQLSADKTMESEFTMLVYLTGMDDDPVLDASQGRLMG
GSTRFHHNKKTPIDVEPQTGTVCLHWQLHDCLHEGLRVTGGVKWLLRTDV
YFPRLSSSMRMTAMKTGGGEGGRRGGVGKRGVSS* back to topmRNA from alignment at scaffold_13:88188..90967+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5292 ID=mRNA_5292|Name=jgi.p|Nanoce1779_2|671392|organism=Nannochloropsis oceanica|type=mRNA|length=2780bp|location=Sequence derived from alignment at scaffold_13:88188..90967+ (Nannochloropsis oceanica)
CAATGCGACCGACGGACCCACACTTGTCGTCCTTGAAGGGCGGCCATCGC
TTCATTCTTGCTCCACACATTTTCTTTGTCTCACACAATCGTCACATAAT
TACAGGCAGGGCGTATAGATTGTCTTTTATAAGGTCCTGGAGACCCCACT
GTCTGCCACTCCTGGCGCGTGCTCAAGGCTAATTATTATGCCAAGCGCGA
CGGTTTCCTCCTCCTCTACCTCCTCCTCATCCTTTCTCGGCTGGCCGACC
CTCGCCCGCCCATCCAAGGGTAGCAGCAACAGCAACAGCCAGCCTTTCCT
CTCCACTGCTTCTTCCTACCAGCACTATTCCCCTTCTCCGTCCTTTGAAG
TTCGGGAACTTGGGCCCGGGCTCTTCACCGTTGCCGACGTCTTCACCCAA
CAGCAATGCCGACGCATGCTACAAGCTGCTGAGGCACAAGGCATGACACC
TACTAACCCCCGTAATCTCGCCCCTCCCAAAGGTCATGCATTTCGAAACA
ATGAGCGGCTCTTGGTGCACGACCCGGCATTCGCTGATGAGCTTTTTGAG
TACATGCGGCCGGTGTTGGAGACGATTGTGCGAGTGGAGGACCAGGCTGT
ACCCTGTGGGCTATCACCAGAATTTCGATTTTATCGTTATGTGAAGGGTG
AGAAAGAAGGTGGTGGAGGGATACGAGGGAGGGGGCTTTCTGCTTGTCGG
TATCAATGGGTATGGAAAAAGAAGGACTAAACACGGTCTTCCTTATTTTG
AAACAACATCACCTTTTGTCCAACCCGATTGCACCGTACGTCTGGAATAA
ATGCACCGTCTCCATTCTTTTCTCATTCCTTCACTTCGCCACTTCTTTTT
TCTTCCTTTTTGAACGCACCGCTTGTCAGACGCCTGGTTCGGTCCCCACA
TCGACGAAACGCAATTAAGCGCTGACAAGACCATGGAAAGCGAGTTCACC
ATGCTCGTTTACCTCACGGGCATGGATGATGACCCCGTGCTGGACGCAAG
CCAAGGCAGACTTATGGGCGGATCGACGCGTTTCCACCACAATAAGAAAA
CACCCATTGACGTGGAGCCTCAAACGGGCACGGTTTGCTTGCATTGGCAA
TTGCACGATTGTCTGCACGAGGGCCTGCGGGTGACTGGAGGGGTTAAGTG
GCTGTTAAGGACTGATGTGTATTTCCCCAGGTTGAGTAGTAGCATGCGAA
TGACGGCCATGAAGACGGGGGGAGGGGAGGGAGGAAGAAGAGGAGGAGTA
GGAAAAAGGGGAGGTGGAGGAAAAGGAGGGAGAGGCCGAGGAGGAAGGGA
AGGGAGAGGCGGAGGGGGAAAAGGAAGAGAAGGAGAACGGTCGAAGGTGT
GGGGTGTGGAAACCAACAAGGCCAGAAAAGGGTGACGAAAGTACCAATGA
ATCACTCGCGTACAGTGAGCTCCTAGGAGACATGTTTTCGTTCTAGTCAT
CGTGCTCTTTTGATGAATACGTATATTTTACATTACGGTTGCTGTTTTGT
CCACGTTGGCCTCCTACCACTCAGCCAGGCCCACCACCCCCTCCTCTTTC
CATCTCCTCCCTCATCTTCTCTCCTCCTCCGATCTCCCTTCCTCTTTCCA
TCTCCTCCCTTGTCTTCTCTCTTCATCTGATCTCCCTCCCTCTTTCCCGG
CTTGGCATGAATCAGGTAAGTCGTCCCGAAATGCCACCTCGTCATACTCG
TCACCTCCAGGCCCGCCTCACGGACCATTTTCTCAATATCCCGGTTCCAT
ACACATCCCCACCGAGCAGTGTGCCGATGACTGTTTTTGTCCAATATCGC
GTTCAGCCATTGATAATGACTCCGCCCGTGCTCCAACAACAGAATCTGGC
CGTCGTCCTTACACACCCTTTCCATCTCTTGCAATGATTGTTGGGGGTCC
TCGAATGAGCATAGACCAAAAGTATCGCAGACTGTGTCGAAGGTACGGCT
GGGGAAGCTCATGCGGTTCACGTCCATTCTACCAAATGTCACATCGCCGC
GACGGCTGATGGGGAAAAGGAGGGAAGTAGGGGAGAGGGCAAGAAAGGGG
ATGAGGCACAACACCCGATGTTTCACCTGCTTCTATCCATGACTCCTTCC
CCCCACCCCATTCCGTTTCCCCTCATCGTGTGCGCCACTCCTAGCATTCT
TCCTTCCAAAGAGCAAAAAGCAACTCATCGTGGCCTTTCATGCTGCGCCC
TCTCTGAGCCACCGGCCTCCCATTAATATGTTATACGTACATCTCGCCTT
TTTCTTCACATATTACCTTTTCCTCAATTTGCGCTCAGTCTCAGCCATCA
TCCCCTCGCACAAATCGATAATCGTCAGCTCCACACTTTGAGGGAAATAC
TCCAGGTTCCTTCCCGTCCCGCCCGCCACTTCTAAAACCTTCCCCTTGGC
TTCGCGCAACAACCATCGCCGCAACAAGTTTAAGCCCATAACTGTCTCAT
CAGTTCCAATCTGCTTGTCGTAGCCCGAGGCCCCCTCTCGAAAGATTGCC
AGACGCTCTTCCTCTGAGAATTGCTTAGGGTTGCCCTGCTCGTCCTCTGC
CTTTTCCCCGAGCTCTTTCTTAGCAGCGTCTTCCCGTTGGCTCAAGGCCC
ACCAGTAGCCCCCGCCGATGATGCCCAGGTAACTTCCGACGCCCAATGTC
ATGTTTTTGACGGAGACGCGCATGGTGTGGAAGGTATGGAAGCAAAAGGC
AGGAGGTTTTCTTCTCACTTGCGCGGAAAAGGTCTTGATCTTCGGCCCTC
TGGGTGCCTGTCGGGACTGCCTTTGCCTGT back to topCoding sequence (CDS) from alignment at scaffold_13:88188..90967+ >mRNA_5292 ID=mRNA_5292|Name=jgi.p|Nanoce1779_2|671392|organism=Nannochloropsis oceanica|type=CDS|length=2565bp|location=Sequence derived from alignment at scaffold_13:88188..90967+ (Nannochloropsis oceanica)
ATGCCAAGCGCGACGGTTTCCTCCTCCTCTACCTCCTCCTCATCCTTTCT
CGGCTGGCCGACCCTCGCCCGCCCATCCAAGGGTAGCAGCAACAGCAACA
GCCAGCCTTTCCTCTCCACTGCTTCTTCCTACCAGCACTATTCCCCTTCT
CCGTCCTTTGAAGTTCGGGAACTTGGGCCCGGGCTCTTCACCGTTGCCGA
CGTCTTCACCCAACAGCAATGCCGACGCATGCTACAAGCTGCTGAGGCAC
AAGGCATGACACCTACTAACCCCCGTAATCTCGCCCCTCCCAAAGGTCAT
GCATTTCGAAACAATGAGCGGCTCTTGGTGCACGACCCGGCATTCGCTGA
TGAGCTTTTTGAGTACATGCGGCCGGTGTTGGAGACGATTGTGCGAGTGG
AGGACCAGGCTGTACCCTGTGGGCTATCACCAGAATTTCGATTTTATCGT
TATGTGAAGGACGCCTGGTTCGGTCCCCACATCGACGAAACGCAATTAAG
CGCTGACAAGACCATGGAAAGCGAGTTCACCATGCTCGTTTACCTCACGG
GCATGGATGATGACCCCGTGCTGGACGCAAGCCAAGGCAGACTTATGGGC
GGATCGACGCGTTTCCACCACAATAAGAAAACACCCATTGACGTGGAGCC
TCAAACGGGCACGGTTTGCTTGCATTGGCAATTGCACGATTGTCTGCACG
AGGGCCTGCGGGTGACTGGAGGGGTTAAGTGGCTGTTAAGGACTGATGTG
TATTTCCCCAGGTTGAGTAGTAGCATGCGAATGACGGCCATGAAGACGGG
GGGAGGGGAGGGAGGAAGAAGAGGAGGAGTAGGAAAAAGGGGAGTGAGCT
CCTAGATGCCAAGCGCGACGGTTTCCTCCTCCTCTACCTCCTCCTCATCC
TTTCTCGGCTGGCCGACCCTCGCCCGCCCATCCAAGGGTAGCAGCAACAG
CAACAGCCAGCCTTTCCTCTCCACTGCTTCTTCCTACCAGCACTATTCCC
CTTCTCCGTCCTTTGAAGTTCGGGAACTTGGGCCCGGGCTCTTCACCGTT
GCCGACGTCTTCACCCAACAGCAATGCCGACGCATGCTACAAGCTGCTGA
GGCACAAGGCATGACACCTACTAACCCCCGTAATCTCGCCCCTCCCAAAG
GTCATGCATTTCGAAACAATGAGCGGCTCTTGGTGCACGACCCGGCATTC
GCTGATGAGCTTTTTGAGTACATGCGGCCGGTGTTGGAGACGATTGTGCG
AGTGGAGGACCAGGCTGTACCCTGTGGGCTATCACCAGAATTTCGATTTT
ATCGTTATGTGAAGGACGCCTGGTTCGGTCCCCACATCGACGAAACGCAA
TTAAGCGCTGACAAGACCATGGAAAGCGAGTTCACCATGCTCGTTTACCT
CACGGGCATGGATGATGACCCCGTGCTGGACGCAAGCCAAGGCAGACTTA
TGGGCGGATCGACGCGTTTCCACCACAATAAGAAAACACCCATTGACGTG
GAGCCTCAAACGGGCACGGTTTGCTTGCATTGGCAATTGCACGATTGTCT
GCACGAGGGCCTGCGGGTGACTGGAGGGGTTAAGTGGCTGTTAAGGACTG
ATGTGTATTTCCCCAGGTTGAGTAGTAGCATGCGAATGACGGCCATGAAG
ACGGGGGGAGGGGAGGGAGGAAGAAGAGGAGGAGTAGGAAAAAGGGGAGT
GAGCTCCTAGATGCCAAGCGCGACGGTTTCCTCCTCCTCTACCTCCTCCT
CATCCTTTCTCGGCTGGCCGACCCTCGCCCGCCCATCCAAGGGTAGCAGC
AACAGCAACAGCCAGCCTTTCCTCTCCACTGCTTCTTCCTACCAGCACTA
TTCCCCTTCTCCGTCCTTTGAAGTTCGGGAACTTGGGCCCGGGCTCTTCA
CCGTTGCCGACGTCTTCACCCAACAGCAATGCCGACGCATGCTACAAGCT
GCTGAGGCACAAGGCATGACACCTACTAACCCCCGTAATCTCGCCCCTCC
CAAAGGTCATGCATTTCGAAACAATGAGCGGCTCTTGGTGCACGACCCGG
CATTCGCTGATGAGCTTTTTGAGTACATGCGGCCGGTGTTGGAGACGATT
GTGCGAGTGGAGGACCAGGCTGTACCCTGTGGGCTATCACCAGAATTTCG
ATTTTATCGTTATGTGAAGGACGCCTGGTTCGGTCCCCACATCGACGAAA
CGCAATTAAGCGCTGACAAGACCATGGAAAGCGAGTTCACCATGCTCGTT
TACCTCACGGGCATGGATGATGACCCCGTGCTGGACGCAAGCCAAGGCAG
ACTTATGGGCGGATCGACGCGTTTCCACCACAATAAGAAAACACCCATTG
ACGTGGAGCCTCAAACGGGCACGGTTTGCTTGCATTGGCAATTGCACGAT
TGTCTGCACGAGGGCCTGCGGGTGACTGGAGGGGTTAAGTGGCTGTTAAG
GACTGATGTGTATTTCCCCAGGTTGAGTAGTAGCATGCGAATGACGGCCA
TGAAGACGGGGGGAGGGGAGGGAGGAAGAAGAGGAGGAGTAGGAAAAAGG
GGAGTGAGCTCCTAG back to top
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