jgi.p|Nanoce1779_2|671391, mRNA_5291 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671391
Unique Name	mRNA_5291
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1382
Alignment location	scaffold_13:86292..88212 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671477
Track	FilteredModels2
ProteinId	671391

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:86292..88212 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671391	gene_5291	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671391	mRNA_5291-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5291	CDS_5291	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:86292..88212-
coding sequence from alignment at scaffold_13:86292..88212-

mRNA sequence

>mRNA_5291 ID=mRNA_5291|Name=jgi.p|Nanoce1779_2|671391|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp
AAGTGTGGGTCCGTCGGTCGCATTGACCACACGACCACAAGCCCCTCTTT
CACGCCAACGACTCATGCGCCACCTACGTACATACGTTAACGACCTCTAG
TCATTCTAACAGCGAGAACGACGCAGCCAAGAGCCTCAAACCCAGAGCTT
CAATTAAGGCCTCGACACGACACTCTCCCTTGGCTAGTATCCCCTATGAG
TGCGATGGCCCCCATCAACGCTGCGTTCGCACCTCGGATGCTCCGCCCAT
CCAAGACTCAAATTACAACCCTACAGGCCCCGGTGAGCATGGGGACAGAG
GACTTTAACGGGGACGATAACGAGTACATCCTCCACTGCGTCCACGCCTG
CGACGGCAGCACCGTGACCGCCGCCCTCTCCAACTACCACATCAAGACCT
ACGACCGCCCCACGCTAAAGCCCACATCATCGTCCTCCCAAAAAGAATTG
CTTGCCGTGGGAGTGGGAAACGCTATCGATTTCTTTGATAGCCGCAAGGC
TGGAGGAGGAGGGGGGGGGGGGAAGTTGGGAAGGTACGCGGACGTACATA
CTGACTTGGTGACGAAAGTGGCCTTTCATCCGTCAAGAAGGGCTACACTG
GCGTCAGGCTCTGAGGATGGTTTAATCTGTTTGTATGACACGGGGGTAGG
GCAGGCGGACGAGGCGTTGGTGTGTATTTTAAATGCGGAGTGCCCGGTGA
GGGATTTGACATTTTTTGGGGTAGAAGGGGATGGGCTGGCTTTGTTGACA
GGGAGTGAAGGGACGATGGTCTGGCATTGGCCCTCTGCAGCACGGGCGTT
GAAAATTGATGATTTGAGACAGGCTGTGCCTTCCATGGGGATTAAGGAGG
TGGGAGAGCAAGGAGGAGGGGGCTTGTTTTCGGTAAAATACCATTATGAC
CAGGGCGGGGATAGGTTGTTGCTGGCGTTGAGTGATGTGGAGGGACAGTT
AACGGTGCTGCAGGTGATGCCGGGAGGGGGCATGCATCCGGTGATGCAGC
TGCAGCAGGGCCATACGGCATTGGTGCGAGCGGTGGATTTGTGGGATGGG
TCGTGGGTGACGGGAGGGGAGGATGCCCGCCTTTGCTTATGGGGATGCAA
GGTGGAGGCTGGGGAAGGGGTTGCTGCGACCAGAGGAACAGAAAAAATGA
CCAAGAAAAAGAAGGGCAAGGAGATAGCACACTACAAGCCATATTAAATT
TGGAATTGATGGTTCACAAAAGAAAAACCTCCCCCTTTGCAGCTCGGCAC
GGTCTTGAGCTCGACCCAAACTCAATTCCCCATGTTATCCTTGCATTTGC
TGCCAATCTCATCTCAACGCCTGTGAAATATACGACACACAGGCACTATG
CCCTCGAATACCACCCTCCGGAGGGGAGGAGG

protein sequence of jgi.p|Nanoce1779_2|671391

>mRNA_5291-protein ID=mRNA_5291-protein|Name=jgi.p|Nanoce1779_2|671391|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MSAMAPINAAFAPRMLRPSKTQITTLQAPVSMGTEDFNGDDNEYILHCVH
ACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKELLAVGVGNAIDFFDSR
KAGGGGGGGKLGRYADVHTDLVTKVAFHPSRRATLASGSEDGLICLYDTG
VGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAAR
ALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEG
QLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGSWVTGGEDARLCLWG
CKVEAGEGVAATRGTEKMTKKKKGKEIAHYKPY*

mRNA from alignment at scaffold_13:86292..88212-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5291 ID=mRNA_5291|Name=jgi.p|Nanoce1779_2|671391|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp|location=Sequence derived from alignment at scaffold_13:86292..88212- (Nannochloropsis oceanica)
AAGTGTGGGTCCGTCGGTCGCATTGACCACACGACCACAAGCCCCTCTTT
CACGCCAACGACTCATGCGCCACCTACGTACATACGTTAACGACCTCTAG
TCATTCTAACAGCGAGAACGACGCAGCCAAGAGCCTCAAACCCAGAGCTT
CAATTAAGGCCTCGACACGACACTCTCCCTTGGCTAGTATCCCCTATGAG
TGCGATGGCCCCCATCAACGCTGCGTTCGCACCTCGGATGCTCCGCCCAT
CCAAGACTCAAATTACAACCCTACAGGCCCCGGTGAGCATGGGGACAGAG
GACTTTAACGGGGACGATAACGAGTAAGTGTGGGCATTGCCTTGGAAGGG
TGGGTTTTGTGGAAGGGATTGGGCGGGAGGTTGACTGCCCGTGGATTCGT
ATCATAAATCGATAAATGTTTGAAAGCAGCGAACCTTGAAGCCATTTATA
TGATCATAGTTTATGGCATGCCACAAGACCGGTAGGTACAGTAAAACGGA
AGGAGGTTTCAAGGGCGGCACGGAAGGAGAGGAGGGAAGGGCATCACCAA
CAACTCCTTCCCCTCCATGCGCGGGACCCTACGGGGCTGCCCTATGTCAA
CGAAACGACGTCGTGAAAACAACCACACAAATTCTCGTTAATCCACGTTT
GTACCTGTTTCTTACCCGATACTATCATTAAGGTACATCCTCCACTGCGT
CCACGCCTGCGACGGCAGCACCGTGACCGCCGCCCTCTCCAACTACCACA
TCAAGACCTACGACCGCCCCACGCTAAAGCCCACATCATCGTCCTCCCAA
AAAGGTCACATAGGCCCTATAACTAGTCTCTGTCCCTCCCCCGACCATCC
CTCTTTATTTGTGTCCTCATCAGAAGATAAGACTGTGCGTTTGTGGGATA
TTAGAGGCCCTAATAAAAATGCATGCACAGCTGTAATAAATCAGGAAGAC
GAAGCCCTATCTTGTACCTTGGGTATCGGAACAGAATTGCTTGCCGTGGG
AGTGGGAAACGCTATCGATTTCTTTGATAGCCGCAAGGCTGGAGGAGGAG
GGGGGGGGGGGAAGTTGGGAAGGTACGCGGACGTACATACTGACTTGGTG
ACGAAAGTGGCCTTTCATCCGTCAAGAAGGGCTACACTGGCGTCAGGCTC
TGAGGATGGTTTAATCTGTTTGTATGACACGGGGGTAGGGCAGGCGGACG
AGGCGTTGGTGTGTATTTTAAATGCGGAGTGCCCGGTGAGGGATTTGACA
TTTTTTGGGGTAGAAGGGGATGGGCTGGCTTTGTTGACAGGGAGTGAAGG
GACGATGGTCTGGCATTGGCCCTCTGCAGCACGGGCGTTGAAAATTGATG
ATTTGAGACAGGCTGTGCCTTCCATGGGGATTAAGGAGGTGGGAGAGCAA
GGAGGAGGGGGCTTGTTTTCGGTAAAATACCATTATGACCAGGGCGGGGA
TAGGTTGTTGCTGGCGTTGAGTGATGTGGAGGGACAGTTAACGGTGCTGC
AGGTGATGCCGGGAGGGGGCATGCATCCGGTGATGCAGCTGCAGCAGGGC
CATACGGCATTGGTGCGAGCGGTGGATTTGTGGGATGGGTCGTGGGTGAC
GGGAGGGGAGGATGCCCGCCTTTGCTTATGGGGATGCAAGGTGGAGGCTG
GGGAAGGGGTTGCTGCGACCAGAGGAACAGAAAAAATGACCAAGAAAAAG
AAGGGCAAGGAGATAGCACACTACAAGCCATATTAAATTTGGAATTGATG
GTTCACAAAAGAAAAACCTCCCCCTTTGCAGCTCGGCACGGTCTTGAGCT
CGACCCAAACTCAATTCCCCATGTTATCCTTGCATTTGCTGCCAATCTCA
TCTCAACGCCTGTGAAATATACGACACACAGGCACTATGCCCTCGAATAC
CACCCTCCGGAGGGGAGGAGG

Coding sequence (CDS) from alignment at scaffold_13:86292..88212-

>mRNA_5291 ID=mRNA_5291|Name=jgi.p|Nanoce1779_2|671391|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_13:86292..88212- (Nannochloropsis oceanica)
AATTGCTTGCCGTGGGAGTGGGAAACGCTATCGATTTCTTTGATAGCCGC
AAGGCTGGAGGAGGAGGGGGGGGGGGGAAGTTGGGAAGGTACGCGGACGT
ACATACTGACTTGGTGACGAAAGTGGCCTTTCATCCGTCAAGAAGGGCTA
CACTGGCGTCAGGCTCTGAGGATGGTTTAATCTGTTTGTATGACACGGGG
GTAGGGCAGGCGGACGAGGCGTTGGTGTGTATTTTAAATGCGGAGTGCCC
GGTGAGGGATTTGACATTTTTTGGGGTAGAAGGGGATGGGCTGGCTTTGT
TGACAGGGAGTGAAGGGACGATGGTCTGGCATTGGCCCTCTGCAGCACGG
GCGTTGAAAATTGATGATTTGAGACAGGCTGTGCCTTCCATGGGGATTAA
GGAGGTGGGAGAGCAAGGAGGAGGGGGCTTGTTTTCGGTAAAATACCATT
ATGACCAGGGCGGGGATAGGTTGTTGCTGGCGTTGAGTGATGTGGAGGGA
CAGTTAACGGTGCTGCAGGTGATGCCGGGAGGGGGCATGCATCCGGTGAT
GCAGCTGCAGCAGGGCCATACGGCATTGGTGCGAGCGGTGGATTTGTGGG
ATGGGTCGTGGGTGACGGGAGGGGAGGATGCCCGCCTTTGCTTATGGGGA
TGCAAGGTGGAGGCTGGGGAAGGGGTTGCTGCGACCAGAGGAACAGAAAA
AATGACCAAGAAAAAGAAGGGCAAGGAGATAGCACACTACAAGCCATATT
AAGTACATCCTCCACTGCGTCCACGCCTGCGACGGCAGCACCGTGACCGC
CGCCCTCTCCAACTACCACATCAAGACCTACGACCGCCCCACGCTAAAGC
CCACATCATCGTCCTCCCAAAAAGATGAGTGCGATGGCCCCCATCAACGC
TGCGTTCGCACCTCGGATGCTCCGCCCATCCAAGACTCAAATTACAACCC
TACAGGCCCCGGTGAGCATGGGGACAGAGGACTTTAACGGGGACGATAAC
GAAATTGCTTGCCGTGGGAGTGGGAAACGCTATCGATTTCTTTGATAGCC
GCAAGGCTGGAGGAGGAGGGGGGGGGGGGAAGTTGGGAAGGTACGCGGAC
GTACATACTGACTTGGTGACGAAAGTGGCCTTTCATCCGTCAAGAAGGGC
TACACTGGCGTCAGGCTCTGAGGATGGTTTAATCTGTTTGTATGACACGG
GGGTAGGGCAGGCGGACGAGGCGTTGGTGTGTATTTTAAATGCGGAGTGC
CCGGTGAGGGATTTGACATTTTTTGGGGTAGAAGGGGATGGGCTGGCTTT
GTTGACAGGGAGTGAAGGGACGATGGTCTGGCATTGGCCCTCTGCAGCAC
GGGCGTTGAAAATTGATGATTTGAGACAGGCTGTGCCTTCCATGGGGATT
AAGGAGGTGGGAGAGCAAGGAGGAGGGGGCTTGTTTTCGGTAAAATACCA
TTATGACCAGGGCGGGGATAGGTTGTTGCTGGCGTTGAGTGATGTGGAGG
GACAGTTAACGGTGCTGCAGGTGATGCCGGGAGGGGGCATGCATCCGGTG
ATGCAGCTGCAGCAGGGCCATACGGCATTGGTGCGAGCGGTGGATTTGTG
GGATGGGTCGTGGGTGACGGGAGGGGAGGATGCCCGCCTTTGCTTATGGG
GATGCAAGGTGGAGGCTGGGGAAGGGGTTGCTGCGACCAGAGGAACAGAA
AAAATGACCAAGAAAAAGAAGGGCAAGGAGATAGCACACTACAAGCCATA
TTAAGTACATCCTCCACTGCGTCCACGCCTGCGACGGCAGCACCGTGACC
GCCGCCCTCTCCAACTACCACATCAAGACCTACGACCGCCCCACGCTAAA
GCCCACATCATCGTCCTCCCAAAAAGATGAGTGCGATGGCCCCCATCAAC
GCTGCGTTCGCACCTCGGATGCTCCGCCCATCCAAGACTCAAATTACAAC
CCTACAGGCCCCGGTGAGCATGGGGACAGAGGACTTTAACGGGGACGATA
ACGAAATTGCTTGCCGTGGGAGTGGGAAACGCTATCGATTTCTTTGATAG
CCGCAAGGCTGGAGGAGGAGGGGGGGGGGGGAAGTTGGGAAGGTACGCGG
ACGTACATACTGACTTGGTGACGAAAGTGGCCTTTCATCCGTCAAGAAGG
GCTACACTGGCGTCAGGCTCTGAGGATGGTTTAATCTGTTTGTATGACAC
GGGGGTAGGGCAGGCGGACGAGGCGTTGGTGTGTATTTTAAATGCGGAGT
GCCCGGTGAGGGATTTGACATTTTTTGGGGTAGAAGGGGATGGGCTGGCT
TTGTTGACAGGGAGTGAAGGGACGATGGTCTGGCATTGGCCCTCTGCAGC
ACGGGCGTTGAAAATTGATGATTTGAGACAGGCTGTGCCTTCCATGGGGA
TTAAGGAGGTGGGAGAGCAAGGAGGAGGGGGCTTGTTTTCGGTAAAATAC
CATTATGACCAGGGCGGGGATAGGTTGTTGCTGGCGTTGAGTGATGTGGA
GGGACAGTTAACGGTGCTGCAGGTGATGCCGGGAGGGGGCATGCATCCGG
TGATGCAGCTGCAGCAGGGCCATACGGCATTGGTGCGAGCGGTGGATTTG
TGGGATGGGTCGTGGGTGACGGGAGGGGAGGATGCCCGCCTTTGCTTATG
GGGATGCAAGGTGGAGGCTGGGGAAGGGGTTGCTGCGACCAGAGGAACAG
AAAAAATGACCAAGAAAAAGAAGGGCAAGGAGATAGCACACTACAAGCCA
TATTAAGTACATCCTCCACTGCGTCCACGCCTGCGACGGCAGCACCGTGA
CCGCCGCCCTCTCCAACTACCACATCAAGACCTACGACCGCCCCACGCTA
AAGCCCACATCATCGTCCTCCCAAAAAGATGAGTGCGATGGCCCCCATCA
ACGCTGCGTTCGCACCTCGGATGCTCCGCCCATCCAAGACTCAAATTACA
ACCCTACAGGCCCCGGTGAGCATGGGGACAGAGGACTTTAACGGGGACGA
TAACGA

Synonyms

Publications