jgi.p|Nanoce1779_2|62935, mRNA_5289 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|62935
Unique NamemRNA_5289
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length651
Alignment locationscaffold_13:82157..82955 +

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Properties
Property NameValue
TranscriptId63021
TrackFilteredModels2
ProteinId62935
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:82157..82955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|62935gene_5289Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|62935mRNA_5289-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5289CDS_5289Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5289 ID=mRNA_5289|Name=jgi.p|Nanoce1779_2|62935|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
GGAGGTCATGGCGGCCAAAGACGAGGCCCTAAGACAGCGAAAATTCAGGA
GGGAGCGAGGCGAGGAGGACGCGACGGATGTACGAGAACAGGGAAATGTA
TTTTACAGGGACGGCAACTTTGAGGCAGCCTTGGCGTGCTACACACGGTC
CCTGACCTTAGATAGCGAAAATGTTCTTGCCCTCTCGAATCGCGCCATGA
CCCACATCAAGCTTGGGCAGTTCCAAGCAGCAGTCAAAGATGCTACCCAG
GCCGTGATCCTCGATCCCTGCCACGTCAAGTCTTTGCAACGCCGGGCAAG
TGCCTACGTGAAACAAGGCATGCATCATTCAGCCTTGCGGGACGTCGAAA
AAGCTTTGGGCTACCAACCCAACAGCAAGGAGCTTCGTGTTGAGAAAAAG
CGACTACAGCAGAAGCTTAAGACGTTGGCGGCGATCGAAGTACTCTCATC
GTCCTCCTCCCCGTCGAATGGAAGCGTTGACAATGGACAAGAGAGCAAAA
GTGCCTTGTGCATGGAATAAGAATAATAGACATACTGTCATTCTAATCAA
TTTCTGACAGATTTTGGATTGCTTGCTTTTCACTCGTGAAGCTATCTACT
ATCTACACTGGACGAGTGCCCGGCTCATGAGTTGATTTGTCTGTACGTCT
G
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protein sequence of jgi.p|Nanoce1779_2|62935

>mRNA_5289-protein ID=mRNA_5289-protein|Name=jgi.p|Nanoce1779_2|62935|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MAAKDEALRQRKFRRERGEEDATDVREQGNVFYRDGNFEAALACYTRSLT
LDSENVLALSNRAMTHIKLGQFQAAVKDATQAVILDPCHVKSLQRRASAY
VKQGMHHSALRDVEKALGYQPNSKELRVEKKRLQQKLKTLAAIEVLSSSS
SPSNGSVDNGQESKSALCME*
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mRNA from alignment at scaffold_13:82157..82955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5289 ID=mRNA_5289|Name=jgi.p|Nanoce1779_2|62935|organism=Nannochloropsis oceanica|type=mRNA|length=799bp|location=Sequence derived from alignment at scaffold_13:82157..82955+ (Nannochloropsis oceanica)
GGAGGTCATGGCGGCCAAAGACGAGGCCCTAAGACAGCGAAAATTCAGGA
GGGAGCGAGGCGAGGAGGACGCGACGGATGTACGAGAACAGGGAAATGTA
TTTTACAGGGACGGCAACTTTGAGGCAGCCTTGGCGTGCTACACACGGTC
CCTGACCTTAGATAGGTGCGTTTTTTTTTTCACGCCCCGGGGGGGGGGGG
AGGGAGGGGGCCAGTGAAAAGATGAGGAAGCGCTGCGCCCAGAGTAGAAA
TATCACAATTTATAATTTTCAAACTTATGGCATTTCGCTTTTATTAATCC
AATACGTAAAAAGCGAAAATGTTCTTGCCCTCTCGAATCGCGCCATGACC
CACATCAAGCTTGGGCAGTTCCAAGCAGCAGTCAAAGATGCTACCCAGGC
CGTGATCCTCGATCCCTGCCACGTCAAGTCTTTGCAACGCCGGGCAAGTG
CCTACGTGAAACAAGGCATGCATCATTCAGCCTTGCGGGACGTCGAAAAA
GCTTTGGGCTACCAACCCAACAGCAAGGAGCTTCGTGTTGAGAAAAAGCG
ACTACAGCAGAAGCTTAAGACGTTGGCGGCGATCGAAGTACTCTCATCGT
CCTCCTCCCCGTCGAATGGAAGCGTTGACAATGGACAAGAGAGCAAAAGT
GCCTTGTGCATGGAATAAGAATAATAGACATACTGTCATTCTAATCAATT
TCTGACAGATTTTGGATTGCTTGCTTTTCACTCGTGAAGCTATCTACTAT
CTACACTGGACGAGTGCCCGGCTCATGAGTTGATTTGTCTGTACGTCTG
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Coding sequence (CDS) from alignment at scaffold_13:82157..82955+

>mRNA_5289 ID=mRNA_5289|Name=jgi.p|Nanoce1779_2|62935|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_13:82157..82955+ (Nannochloropsis oceanica)
ATGGCGGCCAAAGACGAGGCCCTAAGACAGCGAAAATTCAGGAGGGAGCG
AGGCGAGGAGGACGCGACGGATGTACGAGAACAGGGAAATGTATTTTACA
GGGACGGCAACTTTGAGGCAGCCTTGGCGTGCTACACACGGTCCCTGACC
TTAGATAGCGAAAATGTTCTTGCCCTCTCGAATCGCGCCATGACCCACAT
CAAGCTTGGGCAGTTCCAAGCAGCAGTCAAAGATGCTACCCAGGCCGTGA
TCCTCGATCCCTGCCACGTCAAGTCTTTGCAACGCCGGGCAAGTGCCTAC
GTGAAACAAGGCATGCATCATTCAGCCTTGCGGGACGTCGAAAAAGCTTT
GGGCTACCAACCCAACAGCAAGGAGCTTCGTGTTGAGAAAAAGCGACTAC
AGCAGAAGCTTAAGACGTTGGCGGCGATCGAAGTACTCTCATCGTCCTCC
TCCCCGTCGAATGGAAGCGTTGACAATGGACAAGAGAGCAAAAGTGCCTT
GTGCATGGAATAAATGGCGGCCAAAGACGAGGCCCTAAGACAGCGAAAAT
TCAGGAGGGAGCGAGGCGAGGAGGACGCGACGGATGTACGAGAACAGGGA
AATGTATTTTACAGGGACGGCAACTTTGAGGCAGCCTTGGCGTGCTACAC
ACGGTCCCTGACCTTAGATAGCGAAAATGTTCTTGCCCTCTCGAATCGCG
CCATGACCCACATCAAGCTTGGGCAGTTCCAAGCAGCAGTCAAAGATGCT
ACCCAGGCCGTGATCCTCGATCCCTGCCACGTCAAGTCTTTGCAACGCCG
GGCAAGTGCCTACGTGAAACAAGGCATGCATCATTCAGCCTTGCGGGACG
TCGAAAAAGCTTTGGGCTACCAACCCAACAGCAAGGAGCTTCGTGTTGAG
AAAAAGCGACTACAGCAGAAGCTTAAGACGTTGGCGGCGATCGAAGTACT
CTCATCGTCCTCCTCCCCGTCGAATGGAAGCGTTGACAATGGACAAGAGA
GCAAAAGTGCCTTGTGCATGGAATAA
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Synonyms
Publications