jgi.p|Nanoce1779_2|529390, mRNA_5288 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529390
Unique NamemRNA_5288
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length297
Alignment locationscaffold_13:78981..79277 -

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Properties
Property NameValue
TranscriptId529476
TrackFilteredModels2
ProteinId529390
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:78981..79277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529390gene_5288Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5288CDS_5288Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529390mRNA_5288-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5288 ID=mRNA_5288|Name=jgi.p|Nanoce1779_2|529390|organism=Nannochloropsis oceanica|type=mRNA|length=297bp
ATGAATAATCCTTCTAAACCTCACACCCTCTGCATCGAATTTTTCTGCCC
CGGCTGTCGTCCGGAAGCCCTGCAACCTCTTCTCTCCCTTTTGGTCAGTG
AGGATCAGCTTCTCCTGTTTGCCGAGCCAGTGACAGAGGAGATTGCGCCC
ACGTATTTCGAAGTCATTCGACGCCCGATGGACTTGACAACCATGGCCAA
CAAGCTCTCTCGCGGGGAGTACCGCAATGCCCAGGGCCTGCGTGATGACT
TGGAATTAATGGCGCGGAATGCTTTGACATTCAATGCGACCAACAGC
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protein sequence of jgi.p|Nanoce1779_2|529390

>mRNA_5288-protein ID=mRNA_5288-protein|Name=jgi.p|Nanoce1779_2|529390|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MNNPSKPHTLCIEFFCPGCRPEALQPLLSLLVSEDQLLLFAEPVTEEIAP
TYFEVIRRPMDLTTMANKLSRGEYRNAQGLRDDLELMARNALTFNATNS
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mRNA from alignment at scaffold_13:78981..79277-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5288 ID=mRNA_5288|Name=jgi.p|Nanoce1779_2|529390|organism=Nannochloropsis oceanica|type=mRNA|length=297bp|location=Sequence derived from alignment at scaffold_13:78981..79277- (Nannochloropsis oceanica)
ATGAATAATCCTTCTAAACCTCACACCCTCTGCATCGAATTTTTCTGCCC
CGGCTGTCGTCCGGAAGCCCTGCAACCTCTTCTCTCCCTTTTGGTCAGTG
AGGATCAGCTTCTCCTGTTTGCCGAGCCAGTGACAGAGGAGATTGCGCCC
ACGTATTTCGAAGTCATTCGACGCCCGATGGACTTGACAACCATGGCCAA
CAAGCTCTCTCGCGGGGAGTACCGCAATGCCCAGGGCCTGCGTGATGACT
TGGAATTAATGGCGCGGAATGCTTTGACATTCAATGCGACCAACAGC
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Coding sequence (CDS) from alignment at scaffold_13:78981..79277-

>mRNA_5288 ID=mRNA_5288|Name=jgi.p|Nanoce1779_2|529390|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_13:78981..79277- (Nannochloropsis oceanica)
ATGAATAATCCTTCTAAACCTCACACCCTCTGCATCGAATTTTTCTGCCC
CGGCTGTCGTCCGGAAGCCCTGCAACCTCTTCTCTCCCTTTTGGTCAGTG
AGGATCAGCTTCTCCTGTTTGCCGAGCCAGTGACAGAGGAGATTGCGCCC
ACGTATTTCGAAGTCATTCGACGCCCGATGGACTTGACAACCATGGCCAA
CAAGCTCTCTCGCGGGGAGTACCGCAATGCCCAGGGCCTGCGTGATGACT
TGGAATTAATGGCGCGGAATGCTTTGACATTCAATGCGACCAACAGC
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Synonyms
Publications