jgi.p|Nanoce1779_2|529530, mRNA_5287 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529530
Unique NamemRNA_5287
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length615
Alignment locationscaffold_13:78099..78713 -

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Properties
Property NameValue
TranscriptId529616
TrackFilteredModels2
ProteinId529530
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:78099..78713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529530gene_5287Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5287CDS_5287Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529530mRNA_5287-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5287 ID=mRNA_5287|Name=jgi.p|Nanoce1779_2|529530|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
ATGTCGTGTGGAGGTGTGGATGGCGGGGCGTTGGCGAACTGTGTGAGGGA
GATAAAATACGAGGAAGGGAGGGAGGGAGGGTTCAATGACCTCGCTCACA
CTTCGACGGGCAGCGCGCACGGGCAACTGCACCAGCTTCATGAGCCACAG
CAGCATTACTACCATCACCACCATTACCAGCAAAAGAAGAAGCGCGGTAC
CGACTTGACTCTTCACAAGTGGGATGGGCCAGAGAACTTTGCGGGAGGAA
CAGAAGTTCTGATAGGGGAGCAAGAAGCCTACTATGGTGCATGGCTTGAG
GCATGCTTAGTGTGTGGTGCAACGGGGGACCCGGCCCAGCTTTTGTTCTG
CATGGATTGTGGCGAAGCGTTTCATTTTTATTGCTTACAGGTCCCTGGGA
TCGAGCAGATGGATGCTTATACCCGTGCCACATGGCGATGTGCAAATTGC
AAGTTGTGCGAGGTGTGTGGGACATGTATCGAACGGGAGGAAGGGACACT
ATTGCAGTGCGAGAAATGTGATAAGGGGTATCATATGTCGTGTTTGCACC
CGCCTTTGGCGGTTGCGCCGAAGGATCCGTGGTACTGCGGGAGTTGTGTG
AATTGCCGGCTGTGT
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protein sequence of jgi.p|Nanoce1779_2|529530

>mRNA_5287-protein ID=mRNA_5287-protein|Name=jgi.p|Nanoce1779_2|529530|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MSCGGVDGGALANCVREIKYEEGREGGFNDLAHTSTGSAHGQLHQLHEPQ
QHYYHHHHYQQKKKRGTDLTLHKWDGPENFAGGTEVLIGEQEAYYGAWLE
ACLVCGATGDPAQLLFCMDCGEAFHFYCLQVPGIEQMDAYTRATWRCANC
KLCEVCGTCIEREEGTLLQCEKCDKGYHMSCLHPPLAVAPKDPWYCGSCV
NCRLC
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mRNA from alignment at scaffold_13:78099..78713-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5287 ID=mRNA_5287|Name=jgi.p|Nanoce1779_2|529530|organism=Nannochloropsis oceanica|type=mRNA|length=615bp|location=Sequence derived from alignment at scaffold_13:78099..78713- (Nannochloropsis oceanica)
ATGTCGTGTGGAGGTGTGGATGGCGGGGCGTTGGCGAACTGTGTGAGGGA
GATAAAATACGAGGAAGGGAGGGAGGGAGGGTTCAATGACCTCGCTCACA
CTTCGACGGGCAGCGCGCACGGGCAACTGCACCAGCTTCATGAGCCACAG
CAGCATTACTACCATCACCACCATTACCAGCAAAAGAAGAAGCGCGGTAC
CGACTTGACTCTTCACAAGTGGGATGGGCCAGAGAACTTTGCGGGAGGAA
CAGAAGTTCTGATAGGGGAGCAAGAAGCCTACTATGGTGCATGGCTTGAG
GCATGCTTAGTGTGTGGTGCAACGGGGGACCCGGCCCAGCTTTTGTTCTG
CATGGATTGTGGCGAAGCGTTTCATTTTTATTGCTTACAGGTCCCTGGGA
TCGAGCAGATGGATGCTTATACCCGTGCCACATGGCGATGTGCAAATTGC
AAGTTGTGCGAGGTGTGTGGGACATGTATCGAACGGGAGGAAGGGACACT
ATTGCAGTGCGAGAAATGTGATAAGGGGTATCATATGTCGTGTTTGCACC
CGCCTTTGGCGGTTGCGCCGAAGGATCCGTGGTACTGCGGGAGTTGTGTG
AATTGCCGGCTGTGT
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Coding sequence (CDS) from alignment at scaffold_13:78099..78713-

>mRNA_5287 ID=mRNA_5287|Name=jgi.p|Nanoce1779_2|529530|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_13:78099..78713- (Nannochloropsis oceanica)
ATGTCGTGTGGAGGTGTGGATGGCGGGGCGTTGGCGAACTGTGTGAGGGA
GATAAAATACGAGGAAGGGAGGGAGGGAGGGTTCAATGACCTCGCTCACA
CTTCGACGGGCAGCGCGCACGGGCAACTGCACCAGCTTCATGAGCCACAG
CAGCATTACTACCATCACCACCATTACCAGCAAAAGAAGAAGCGCGGTAC
CGACTTGACTCTTCACAAGTGGGATGGGCCAGAGAACTTTGCGGGAGGAA
CAGAAGTTCTGATAGGGGAGCAAGAAGCCTACTATGGTGCATGGCTTGAG
GCATGCTTAGTGTGTGGTGCAACGGGGGACCCGGCCCAGCTTTTGTTCTG
CATGGATTGTGGCGAAGCGTTTCATTTTTATTGCTTACAGGTCCCTGGGA
TCGAGCAGATGGATGCTTATACCCGTGCCACATGGCGATGTGCAAATTGC
AAGTTGTGCGAGGTGTGTGGGACATGTATCGAACGGGAGGAAGGGACACT
ATTGCAGTGCGAGAAATGTGATAAGGGGTATCATATGTCGTGTTTGCACC
CGCCTTTGGCGGTTGCGCCGAAGGATCCGTGGTACTGCGGGAGTTGTGTG
AATTGCCGGCTGTGT
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Synonyms
Publications