jgi.p|Nanoce1779_2|592010, mRNA_5284 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592010
Unique Name	mRNA_5284
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2888
Alignment location	scaffold_13:68681..71568 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592096
Track	FilteredModels2
ProteinId	592010

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:68681..71568 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592010	gene_5284	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592010	mRNA_5284-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5284	CDS_5284	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:68681..71568+
coding sequence from alignment at scaffold_13:68681..71568+

mRNA sequence

>mRNA_5284 ID=mRNA_5284|Name=jgi.p|Nanoce1779_2|592010|organism=Nannochloropsis oceanica|type=mRNA|length=2888bp
GAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGAAGGAGGAGAAGGAGGA
GGTGCGATGGGATGATACCTCGTCAGCCACGGCACCCTCTCCCCCGACAT
CTTGCCATGTACAGGGGTGTCAACAATTTCTTACCCCGGCTTCTGACTTC
TACATCGCTAAAAAAGCTGCTACTAGGCTGCAGCATGCACCGCAACAGCA
GCGCAAGAGCTTGCTACTGCCGGAGTGGGGGACACAACAGATTGCGAAGG
AGAATGAGGGCGGCTTTATCACAATCAGATACGATATTCGAGACATGACA
TCAAAGGAGCGCTTAGCAATAGTAACGCACATAATCAAGCGCATTGAGAG
TCTCGCTGCTGGTGGTGGTAGTGGTGGTAGTGGTGGTAGTGGTGTTGTCT
TCTCCACCTCTACCTCCTCCATTTCTCCCTCCCAACCTCGTCTAGGTTAT
CCCAGAAAATGGGATGGACGCATTCCTCGAGCAGTTCTCGAGCTAGAAGG
AGCCTTATACCAATACCTCAAAATAGGCCAAGCCCTTCATCCCTCCTTAC
CATTACCAACACCACCACAGCAACACCAGCAGCCACAGCTGCAGCAAAAA
CAGCAGCAGCAACAATTACATTGCCTCGCTCTTCTTCACACCCTCCATTT
TTCTGCCCGGGAGCTCCTACCCCTCGATCTTTTGAACGGCGAAGTGAGCG
AGGCTAAAGTTGCCAAATATCATCGAAGAATTAGACGGGCTGCTGGCATG
TGGGTCGCCTTCCGCCGGCACCTTCGTTTCTTGCAGTGCCAGAACGTACT
GACCTCTGTGGAGATGAGGTCAGTCTTTGGAGATGCCTTGCTGGGGGATA
TGAGCAAAAGGGAACGGGGGGAGATTTTGAGATTGCGTGGAAAGGTAGAC
TTGTTGCTGGAGAGTATGATGAAAGCATTTTCGGAAGAGTTGCAGGAGGA
GCAGAGGGAGAGGGAGAAGGAGAAAAATAAGGAGAAGAGTATTGGTGCTG
TGGATCAACATCTTGACGAGCAAGGGACAACGACAACAAGAAAGGGCATC
AGCAGCACTAGCAGCAGCAGCAGCAGCAGATCCAGTACGCTTGCTGCGGC
CACCTGTCCGGGCAAGAAGAGCTTCTTGAGTCGTGTCCTACGGTGGTAGT
AGGAGAGAGGAAGGGTAGAAAAATGGCATAATCGGTCAAGAATGGAGAAA
GAAAAGTGAATGAAGCAGCATTCATGCACAGCTATGGAGGGAGAAGAAGC
CTGCTGCTATTCGTAACTTCAACATTTGATCTCTTTGTGGTTTGGTATTG
AGATTTTTCCATTTTTTAAACGTGGGCCTGCGCTTTCGTATCTGTATGAC
GCTCACTATATGTGTGTGTTTGTGTACATCTTTAGGCAATTGACTTCACT
GCCCCTTAAACCCACTTTATGCGGTCAAGGGTGCTACAGACATGACCGTC
AGGACGAAACATTATCTAAGTTAGAGGAAGTGCTTGCTGTATTTGAGCGC
ACACCATGTTATCTCCCCTTTATTTTGGGTCTTGCCTCTTTTATGCTTTC
TTTACATGCATGCCATCATTTCTTCAGATTTGTTACCTCGGTGCATGCGT
ACTGTCTACCGAAACGTACCCGAAGCTCATCTTAGGGACGACCTGTCATT
CGCTTCCTCCCTCCTCATAGATCCCAATGCATGCATGCAGTCCTCATGTA
ACGTGCTATTCTCACACATTTCCGAATGCCACCAACTGTCTCCCTCTTTC
CCTTTTCCCATTCAAATATCAGACCCAGCTTCCCTGCTATTGCCGAAGCG
AACGACAATGTCACTACGATTATCACGAAAAACCCACAACAAAACAACTC
CTCCCCATCCTCTTCCCTTCCATAGATATGGAAATGGGTCGGAAGGTAGG
AAAGGAAAAAAGGAGAGAGGGAGGGAGGACATGGGAGGGGGCCTTGGGCC
CGTGATCCTACCCAAATACAACATCCAACTTCCCCGCCAAAATCATGGCC
ATCCACAGCACACCCACGATGATCGACAAAGAGGCACTAAACAATTCCAA
CTTGTATTCAATATTCCTCGCCGAGCCCAACCGCGACGTGCACTCTCCAT
ACAAGGCCGCAAATATCCCCATTATTAACGTTGACGACAGACAGAACGTT
GCCAGGTACAGACTCGCCTTCGGCCATGAATGCAAACGAGCTGCCGGAAG
GACACCTAGCACCCCGCCGGGCCCAGCGATGCCATGGACGATCCCGACAG
AAAAGGCCACAATGCGTTGGACGGCATGGGACTCAAGGTCTACGCGGAGG
CACTGCCGGAGGCGAACAAGAAACCCATGGTAACCTTCGTTGCATTCGCG
CTCAAGGAAAGGTTCGGTGGCTTCCGCAATTCCTCGTCGGTGCTGTGGAG
GAGAAGAGGATATACCAGTGGTGCTGCTGGTATTGGTGATTGCACAGGAG
GACGACAAACTCTGTTTTGACCTCGAAGTGTTCTTGTCGTTGCTGTGGCG
GTCGTTGATGCCATAGCTGCTGCTGTCGTTACTCTCTCTTCTCCTCTTTT
CCTCTTGTTTCTCCTCTTTCCCTTCCTCCTTTCCGTCCTTGTTATCATCC
CCTTCACTGCCATATTCACCGCTACCGCTACCACTTTTGCCTGCGCTGCT
GTTGAAATGATGCGGCGGCATCAACTCAACCCCCATCTCTTCGTCCTCAT
CTGCGAAGGAAGATGAGGAAGAGGATGGAGTCGATGCAGTATCAGCAGTA
TCAGCAGCAGTTGATCTGGGGTCACTGACGCTCTGCAGGGGACTTATCTC
AGCAGCTTCGGCGACACCGATCCTTGCCCGCCCTCCTCGTCCTTCTTCCT
GCTGCTGCAAGGTATCATCCCCCCCCCCCTTCCCTCCC

protein sequence of jgi.p|Nanoce1779_2|592010

>mRNA_5284-protein ID=mRNA_5284-protein|Name=jgi.p|Nanoce1779_2|592010|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MTSKERLAIVTHIIKRIESLAAGGGSGGSGGSGVVFSTSTSSISPSQPRL
GYPRKWDGRIPRAVLELEGALYQYLKIGQALHPSLPLPTPPQQHQQPQLQ
QKQQQQQLHCLALLHTLHFSARELLPLDLLNGEVSEAKVAKYHRRIRRAA
GMWVAFRRHLRFLQCQNVLTSVEMRSVFGDALLGDMSKRERGEILRLRGK
VDLLLESMMKAFSEELQEEQREREKEKNKEKSIGAVDQHLDEQGTTTTRK
GISSTSSSSSSRSSTLAAATCPGKKSFLSRVLRW*

mRNA from alignment at scaffold_13:68681..71568+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5284 ID=mRNA_5284|Name=jgi.p|Nanoce1779_2|592010|organism=Nannochloropsis oceanica|type=mRNA|length=2888bp|location=Sequence derived from alignment at scaffold_13:68681..71568+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGAAGGAGGAGAAGGAGGA
GGTGCGATGGGATGATACCTCGTCAGCCACGGCACCCTCTCCCCCGACAT
CTTGCCATGTACAGGGGTGTCAACAATTTCTTACCCCGGCTTCTGACTTC
TACATCGCTAAAAAAGCTGCTACTAGGCTGCAGCATGCACCGCAACAGCA
GCGCAAGAGCTTGCTACTGCCGGAGTGGGGGACACAACAGATTGCGAAGG
AGAATGAGGGCGGCTTTATCACAATCAGATACGATATTCGAGACATGACA
TCAAAGGAGCGCTTAGCAATAGTAACGCACATAATCAAGCGCATTGAGAG
TCTCGCTGCTGGTGGTGGTAGTGGTGGTAGTGGTGGTAGTGGTGTTGTCT
TCTCCACCTCTACCTCCTCCATTTCTCCCTCCCAACCTCGTCTAGGTTAT
CCCAGAAAATGGGATGGACGCATTCCTCGAGCAGTTCTCGAGCTAGAAGG
AGCCTTATACCAATACCTCAAAATAGGCCAAGCCCTTCATCCCTCCTTAC
CATTACCAACACCACCACAGCAACACCAGCAGCCACAGCTGCAGCAAAAA
CAGCAGCAGCAACAATTACATTGCCTCGCTCTTCTTCACACCCTCCATTT
TTCTGCCCGGGAGCTCCTACCCCTCGATCTTTTGAACGGCGAAGTGAGCG
AGGCTAAAGTTGCCAAATATCATCGAAGAATTAGACGGGCTGCTGGCATG
TGGGTCGCCTTCCGCCGGCACCTTCGTTTCTTGCAGTGCCAGAACGTACT
GACCTCTGTGGAGATGAGGTCAGTCTTTGGAGATGCCTTGCTGGGGGATA
TGAGCAAAAGGGAACGGGGGGAGATTTTGAGATTGCGTGGAAAGGTAGAC
TTGTTGCTGGAGAGTATGATGAAAGCATTTTCGGAAGAGTTGCAGGAGGA
GCAGAGGGAGAGGGAGAAGGAGAAAAATAAGGAGAAGAGTATTGGTGCTG
TGGATCAACATCTTGACGAGCAAGGGACAACGACAACAAGAAAGGGCATC
AGCAGCACTAGCAGCAGCAGCAGCAGCAGATCCAGTACGCTTGCTGCGGC
CACCTGTCCGGGCAAGAAGAGCTTCTTGAGTCGTGTCCTACGGTGGTAGT
AGGAGAGAGGAAGGGTAGAAAAATGGCATAATCGGTCAAGAATGGAGAAA
GAAAAGTGAATGAAGCAGCATTCATGCACAGCTATGGAGGGAGAAGAAGC
CTGCTGCTATTCGTAACTTCAACATTTGATCTCTTTGTGGTTTGGTATTG
AGATTTTTCCATTTTTTAAACGTGGGCCTGCGCTTTCGTATCTGTATGAC
GCTCACTATATGTGTGTGTTTGTGTACATCTTTAGGCAATTGACTTCACT
GCCCCTTAAACCCACTTTATGCGGTCAAGGGTGCTACAGACATGACCGTC
AGGACGAAACATTATCTAAGTTAGAGGAAGTGCTTGCTGTATTTGAGCGC
ACACCATGTTATCTCCCCTTTATTTTGGGTCTTGCCTCTTTTATGCTTTC
TTTACATGCATGCCATCATTTCTTCAGATTTGTTACCTCGGTGCATGCGT
ACTGTCTACCGAAACGTACCCGAAGCTCATCTTAGGGACGACCTGTCATT
CGCTTCCTCCCTCCTCATAGATCCCAATGCATGCATGCAGTCCTCATGTA
ACGTGCTATTCTCACACATTTCCGAATGCCACCAACTGTCTCCCTCTTTC
CCTTTTCCCATTCAAATATCAGACCCAGCTTCCCTGCTATTGCCGAAGCG
AACGACAATGTCACTACGATTATCACGAAAAACCCACAACAAAACAACTC
CTCCCCATCCTCTTCCCTTCCATAGATATGGAAATGGGTCGGAAGGTAGG
AAAGGAAAAAAGGAGAGAGGGAGGGAGGACATGGGAGGGGGCCTTGGGCC
CGTGATCCTACCCAAATACAACATCCAACTTCCCCGCCAAAATCATGGCC
ATCCACAGCACACCCACGATGATCGACAAAGAGGCACTAAACAATTCCAA
CTTGTATTCAATATTCCTCGCCGAGCCCAACCGCGACGTGCACTCTCCAT
ACAAGGCCGCAAATATCCCCATTATTAACGTTGACGACAGACAGAACGTT
GCCAGGTACAGACTCGCCTTCGGCCATGAATGCAAACGAGCTGCCGGAAG
GACACCTAGCACCCCGCCGGGCCCAGCGATGCCATGGACGATCCCGACAG
AAAAGGCCACAATGCGTTGGACGGCATGGGACTCAAGGTCTACGCGGAGG
CACTGCCGGAGGCGAACAAGAAACCCATGGTAACCTTCGTTGCATTCGCG
CTCAAGGAAAGGTTCGGTGGCTTCCGCAATTCCTCGTCGGTGCTGTGGAG
GAGAAGAGGATATACCAGTGGTGCTGCTGGTATTGGTGATTGCACAGGAG
GACGACAAACTCTGTTTTGACCTCGAAGTGTTCTTGTCGTTGCTGTGGCG
GTCGTTGATGCCATAGCTGCTGCTGTCGTTACTCTCTCTTCTCCTCTTTT
CCTCTTGTTTCTCCTCTTTCCCTTCCTCCTTTCCGTCCTTGTTATCATCC
CCTTCACTGCCATATTCACCGCTACCGCTACCACTTTTGCCTGCGCTGCT
GTTGAAATGATGCGGCGGCATCAACTCAACCCCCATCTCTTCGTCCTCAT
CTGCGAAGGAAGATGAGGAAGAGGATGGAGTCGATGCAGTATCAGCAGTA
TCAGCAGCAGTTGATCTGGGGTCACTGACGCTCTGCAGGGGACTTATCTC
AGCAGCTTCGGCGACACCGATCCTTGCCCGCCCTCCTCGTCCTTCTTCCT
GCTGCTGCAAGGTATCATCCCCCCCCCCCTTCCCTCCC

Coding sequence (CDS) from alignment at scaffold_13:68681..71568+

>mRNA_5284 ID=mRNA_5284|Name=jgi.p|Nanoce1779_2|592010|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_13:68681..71568+ (Nannochloropsis oceanica)
ATGACATCAAAGGAGCGCTTAGCAATAGTAACGCACATAATCAAGCGCAT
TGAGAGTCTCGCTGCTGGTGGTGGTAGTGGTGGTAGTGGTGGTAGTGGTG
TTGTCTTCTCCACCTCTACCTCCTCCATTTCTCCCTCCCAACCTCGTCTA
GGTTATCCCAGAAAATGGGATGGACGCATTCCTCGAGCAGTTCTCGAGCT
AGAAGGAGCCTTATACCAATACCTCAAAATAGGCCAAGCCCTTCATCCCT
CCTTACCATTACCAACACCACCACAGCAACACCAGCAGCCACAGCTGCAG
CAAAAACAGCAGCAGCAACAATTACATTGCCTCGCTCTTCTTCACACCCT
CCATTTTTCTGCCCGGGAGCTCCTACCCCTCGATCTTTTGAACGGCGAAG
TGAGCGAGGCTAAAGTTGCCAAATATCATCGAAGAATTAGACGGGCTGCT
GGCATGTGGGTCGCCTTCCGCCGGCACCTTCGTTTCTTGCAGTGCCAGAA
CGTACTGACCTCTGTGGAGATGAGGTCAGTCTTTGGAGATGCCTTGCTGG
GGGATATGAGCAAAAGGGAACGGGGGGAGATTTTGAGATTGCGTGGAAAG
GTAGACTTGTTGCTGGAGAGTATGATGAAAGCATTTTCGGAAGAGTTGCA
GGAGGAGCAGAGGGAGAGGGAGAAGGAGAAAAATAAGGAGAAGAGTATTG
GTGCTGTGGATCAACATCTTGACGAGCAAGGGACAACGACAACAAGAAAG
GGCATCAGCAGCACTAGCAGCAGCAGCAGCAGCAGATCCAGTACGCTTGC
TGCGGCCACCTGTCCGGGCAAGAAGAGCTTCTTGAGTCGTGTCCTACGGT
GGTAG

Synonyms

Publications