jgi.p|Nanoce1779_2|630937, mRNA_5283 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630937
Unique NamemRNA_5283
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1095
Alignment locationscaffold_13:67367..68675 +

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Properties
Property NameValue
TranscriptId631023
TrackFilteredModels2
ProteinId630937
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:67367..68675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630937gene_5283Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630937mRNA_5283-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5283CDS_5283Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5283 ID=mRNA_5283|Name=jgi.p|Nanoce1779_2|630937|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
CGAGAGCTAAGTGATTATTATTTTGTTTACTCGTATTGCTGGCCTTTTTA
AGATGATCTCTTTTCCTTTCACAAGTTTCAGTAAATATAAAAATATACGG
ACACAAAGCGAGGTAATAAAGCGGGAGGGTGCCTGGCGGGATTTTGAAGG
GGGTCAATAGTGCCCACAGAGCAGAAATCCCTCTAATATGCCGCCCTCGC
GAGAACTTTGCCAACCCTTGCAGTGGCCTCCACCAACCCCAACGTCGTCA
ACGGTCCTGGCAGTCCGTTGCGATTATTACAAAGTGACGGACACGACTTT
CAATTTACGTACACAATTCACGTACAAAATAAGACATAGGGAGATGTTGG
GCACGCAACGACAAATATAAGCGACGCAGGCTGAAGAGAGGGACTTTAAG
CATTCCCAAGGACCATCACTCGGCACGACATTCAAAAATAATGCTCGACG
ACAGCATCACCACTGGCCCATCCCACCGGCACGACCATCAGCACTTTCAT
GGCGTCGTCGCAAGGTGGGAGAAGCTGGAAAGACGCCGACAAGAAATTGC
CGATCAGCGCCAAGCTCTTGAGGCCGTCATGCATAAGCAGCACAGACACC
AGCATCAAAGCCAGGACAATGGTGAGGAAAGATCGCACTCTTACCTACAA
AAGCTCGAGATCATGCGCCATCGACTTCAAAAAATACAAACTCGCAATCA
CACCATTCTCCGCGAAGTGGACGAGGCCAAGGCTCTTGTCCAAGAGTATC
GGGAGCAACAACATAACAACGCCCATAACAATAACGACGAGGACGACGAC
AATACGGACAGCAGCAACTGCCGCCAGCGTCTGGTCGCGGCTAAGAAGTC
TTTCATAAGGGTTGTGAAAGAAGACATGGGTATGTTGCCAGCGTTGTGCC
CGGAGAAGATGCTGATGTGGTCAGTGACGGGTGCTGGCGTGGAGGAGAGG
CAGCAGCAGCAGCAGCAGCAAGGAAGACGACAGTCAATCAATGAGAACGG
GCTGTCACCGAACCAGGGTAATGAAACGGAAGAGCGGCCAGTAGCACATA
GAAGTCCCCACGTTATGAGCAGCAATATTCTTTGGAGCGAGGAAG
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protein sequence of jgi.p|Nanoce1779_2|630937

>mRNA_5283-protein ID=mRNA_5283-protein|Name=jgi.p|Nanoce1779_2|630937|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MLDDSITTGPSHRHDHQHFHGVVARWEKLERRRQEIADQRQALEAVMHKQ
HRHQHQSQDNGEERSHSYLQKLEIMRHRLQKIQTRNHTILREVDEAKALV
QEYREQQHNNAHNNNDEDDDNTDSSNCRQRLVAAKKSFIRVVKEDMGMLP
ALCPEKMLMWSVTGAGVEERQQQQQQQGRRQSINENGLSPNQGNETEERP
VAHRSPHVMSSNILWSEE
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mRNA from alignment at scaffold_13:67367..68675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5283 ID=mRNA_5283|Name=jgi.p|Nanoce1779_2|630937|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp|location=Sequence derived from alignment at scaffold_13:67367..68675+ (Nannochloropsis oceanica)
CGAGAGCTAAGTGATTATTATTTTGTTTACTCGTATTGCTGGCCTTTTTA
AGATGATCTCTTTTCCTTTCACAAGTTTCAGTAAATATAAAAATATACGG
ACACAAAGCGAGGTAATAAAGCGGGAGGGTGCCTGGCGGGATTTTGAAGG
GGGTCAATAGTGCCCACAGAGCAGAAATCCCTCTAATATGCCGCCCTCGC
GAGAACTTTGCCAACCCTTGCAGTGGCCTCCACCAACCCCAACGTCGTCA
ACGGTCCTGGCAGTCCGTTGCGATTATTACAAAGTGACGGACACGACTTT
CAATTTACGTACACAATTCACGTACAAAATAAGACATAGGGAGATGTTGG
GCACGCAACGACAAATATAAGCGACGCAGGCTGAAGAGAGGGACTTTAAG
CATTCCCAAGGACCATCACTCGGCACGACATTCAAAAATAATGCTCGACG
ACAGCATCACCACTGGCCCATCCCACCGGCACGACCATCAGCACTTTCAT
GGCGTCGTCGCAAGGTGGGAGAAGCTGGAAAGACGCCGACAAGAAATGTG
AGTGTGATTCTAGCCGAGTTCTTGGAGGTTCCTTGATTTTGGTTTCCCTT
CTTGGTCGTCATTTATTCGTCATCCCTCCCTCAGCAGGCTCTCCAACACT
TGGAGGCTCCACGGCACTCAATGTATCCCGTGCACACGAAGATAATAAGG
CTGATTACACCACATTTATTTCTCCTCTTTATTCATTACCTTTCCTCCCC
CCTGACCGAAGTGCCGATCAGCGCCAAGCTCTTGAGGCCGTCATGCATAA
GCAGCACAGACACCAGCATCAAAGCCAGGACAATGGTGAGGAAAGATCGC
ACTCTTACCTACAAAAGCTCGAGATCATGCGCCATCGACTTCAAAAAATA
CAAACTCGCAATCACACCATTCTCCGCGAAGTGGACGAGGCCAAGGCTCT
TGTCCAAGAGTATCGGGAGCAACAACATAACAACGCCCATAACAATAACG
ACGAGGACGACGACAATACGGACAGCAGCAACTGCCGCCAGCGTCTGGTC
GCGGCTAAGAAGTCTTTCATAAGGGTTGTGAAAGAAGACATGGGTATGTT
GCCAGCGTTGTGCCCGGAGAAGATGCTGATGTGGTCAGTGACGGGTGCTG
GCGTGGAGGAGAGGCAGCAGCAGCAGCAGCAGCAAGGAAGACGACAGTCA
ATCAATGAGAACGGGCTGTCACCGAACCAGGGTAATGAAACGGAAGAGCG
GCCAGTAGCACATAGAAGTCCCCACGTTATGAGCAGCAATATTCTTTGGA
GCGAGGAAG
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Coding sequence (CDS) from alignment at scaffold_13:67367..68675+

>mRNA_5283 ID=mRNA_5283|Name=jgi.p|Nanoce1779_2|630937|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_13:67367..68675+ (Nannochloropsis oceanica)
ATGCTCGACGACAGCATCACCACTGGCCCATCCCACCGGCACGACCATCA
GCACTTTCATGGCGTCGTCGCAAGGTGGGAGAAGCTGGAAAGACGCCGAC
AAGAAATTGCCGATCAGCGCCAAGCTCTTGAGGCCGTCATGCATAAGCAG
CACAGACACCAGCATCAAAGCCAGGACAATGGTGAGGAAAGATCGCACTC
TTACCTACAAAAGCTCGAGATCATGCGCCATCGACTTCAAAAAATACAAA
CTCGCAATCACACCATTCTCCGCGAAGTGGACGAGGCCAAGGCTCTTGTC
CAAGAGTATCGGGAGCAACAACATAACAACGCCCATAACAATAACGACGA
GGACGACGACAATACGGACAGCAGCAACTGCCGCCAGCGTCTGGTCGCGG
CTAAGAAGTCTTTCATAAGGGTTGTGAAAGAAGACATGGGTATGTTGCCA
GCGTTGTGCCCGGAGAAGATGCTGATGTGGTCAGTGACGGGTGCTGGCGT
GGAGGAGAGGCAGCAGCAGCAGCAGCAGCAAGGAAGACGACAGTCAATCA
ATGAGAACGGGCTGTCACCGAACCAGGGTAATGAAACGGAAGAGCGGCCA
GTAGCACATAGAAGTCCCCACGTTATGAGCAGCAATATTCTTTGGAGCGA
GGAAATGCTCGACGACAGCATCACCACTGGCCCATCCCACCGGCACGACC
ATCAGCACTTTCATGGCGTCGTCGCAAGGTGGGAGAAGCTGGAAAGACGC
CGACAAGAAATTGCCGATCAGCGCCAAGCTCTTGAGGCCGTCATGCATAA
GCAGCACAGACACCAGCATCAAAGCCAGGACAATGGTGAGGAAAGATCGC
ACTCTTACCTACAAAAGCTCGAGATCATGCGCCATCGACTTCAAAAAATA
CAAACTCGCAATCACACCATTCTCCGCGAAGTGGACGAGGCCAAGGCTCT
TGTCCAAGAGTATCGGGAGCAACAACATAACAACGCCCATAACAATAACG
ACGAGGACGACGACAATACGGACAGCAGCAACTGCCGCCAGCGTCTGGTC
GCGGCTAAGAAGTCTTTCATAAGGGTTGTGAAAGAAGACATGGGTATGTT
GCCAGCGTTGTGCCCGGAGAAGATGCTGATGTGGTCAGTGACGGGTGCTG
GCGTGGAGGAGAGGCAGCAGCAGCAGCAGCAGCAAGGAAGACGACAGTCA
ATCAATGAGAACGGGCTGTCACCGAACCAGGGTAATGAAACGGAAGAGCG
GCCAGTAGCACATAGAAGTCCCCACGTTATGAGCAGCAATATTCTTTGGA
GCGAGGAA
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Synonyms
Publications