Properties
| Property Name | Value |
|---|
| TranscriptId | 592088 |
| Track | FilteredModels2 |
| ProteinId | 592002 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:62387..65433 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5280 ID=mRNA_5280|Name=jgi.p|Nanoce1779_2|592002|organism=Nannochloropsis oceanica|type=mRNA|length=3047bp
CCCCCTCATCCTCCGCCTCCTCCTCCTCCTCTTTCTGCCCCCACCGCTGC
AATGGCTGTCCGTCCCCGGCCACTTGGAGGTGCCGCAGAAGCAGGGCTTC
TTGTGCGGACACCACCTGTTGATACAAGCCTAATTGCCCCTCGAGAGAGC
TCCGTAAAGTTTCATCCATAATCGCGGTGGAGAAGGCCGTCTGCGTCTCT
CTCAAAGCATGCCGTAGACACTGTACTTTCTGGTTGCCAGTCTGTGCAAA
ATCGCCGCCAAGAGATTCCCGGCTAGGGAGCCAAAATGAGGCCGGGAAGG
AGTGCAAACTTCGACCCAGGCCACGAGCCAACGCCGACACAGAAACCCGT
GGAGAGGCGCCCTGCTGCTGCTCCCGCTTCTTCACCTCCTGTTGTGTCGT
CTGGTTGCTACCCAGTCTCGAGGAATCTTCTGAACAACGAGCAAAAAGGC
TCCACTCCCGCTTCTCCCGAACGTAGGAAGTTACCACCTCCTCGATGAAT
CGGTGGGCCTGGAGGTGGCCGCATCGTGCATCGCTCATGGGAGTGAGTGC
CGCTAGAGGTCGGCCTCCGTCGGAATCATGATCAAAATATTGAACGTCGT
ACAACACCTCCGCGCCTGTGTCAGTTGGCGATGAAAGCACACGGACGGCT
GTCACAATGGCATTACATTGGGACCCGTCCCGCAACCGGCGACAACGCAC
CAGGCTTCCAATGTGAGGACGACGAATAGCAAATCCTTGCTCCCTTCCCT
TCTCTTCTTCTTCCTCCCATTCATCGTCATACCGCAACTGCTCCAGCGTA
CGGTGGGTTTCCCACGTCCGCTGAAGAATCGAAAGCGCAGCCGCCAGAAA
ATGGTGCCCCGATCCTTCGTAGTCTTGCAATAGGCCTAATACTTCCTGGG
ATGGTAGCACGTCCATCATATTCCAGGATTCTGCACACGAATACCTCACA
CCACTCAACCGACAATTATTCCCTTGCCCGTGATTTCGAAAAATTTCTAC
GTGGATTGACTCGATCTCGGTTAACCCCAGCTCTTGCTGTACCGCCTCTA
GCTCTGCACGCTCGACCAACGTCTCCCACTCACCCGCATCTTGCTCTCGG
AGCAGATGTCGTCTCACCAAGACGAGGCTTTCCTCGCTCTTTTGACTATC
TTCTCCTTCTTCGGCACTGTTGGAGGCCTTCACCAAGACCCACATCTGCG
ACGGTGTAAAGTTACCATGCATTCCGCGGCGAACCTCAAGTCGTGTCCAT
TCAGGGGTAGGCGAGAAAGGTGGAGAAGACAACGATGGAGGAGGGTGATG
CTCGGGCGAAACGCGGTACAGGCGAGAGGGCTGGGGCCCTCCAGACTCAA
CCAGCAAATCCTCGTCGTCGTCATCATCGTCATCATCATCGTCAGCAGCA
ACAACAGCAGTAGCTGTGCTTTCCGTGCTGCTGCTGGTGCTGTTACCTCC
CGGGAGATGAATAGTCACTGTATGACCATCCACTTCCGGACGACCCACAT
TTCGCGTTTCATTGCCAGCTACTCTCACCCCCGCCCCTGTATGCGCCTTT
GGTCGGCGTTCGATTATCGTAAGGGGGAAGCGGCTCCGCTCCGTGCTTTG
CCAGTAAGTAGAGGAATTATTGTCGAGCAAGGCCAGCTTGGAGGCTACAC
CGGTCGAGACTTGAAGCCATTTTTGGTCTATGGCGGGGAATACGTCACTG
CAAGTGAGGGGATTGGTGCGTGCCCAGGCCTGGCGACGTCGCTCTTCGTC
TTGGAGCTGACAGGTATGGGATACCTCGGAGTACACCTCAACCAACGCTA
AAAATGAGGGCAAGAGAGCAGCGAGGGCCTTGCGCTCTACGTGCTGCGCG
TCATCTTTGCTCTGGCTTGCTGTCGCTGCAGGGTGCACGACATTTGAATG
CAGGGTGCGGAGTATCTTACTCAATCTCCGACGCTCCAGCTCGTCGTATA
AGTCCACACCTGTCACCTCGATCATTAATCGCAGGGCATTGCATGCCGCG
GCCAATGGGAGAGTGGTTGTCTCTCCACATGCAAGCGTCCGACTACTGCT
GCTGCCTCCTACCGTCTCTGTGGTAGCCGTGGTAGCTGTGGAAAGATAGG
CAAGGTAGAGGTCCAGGGCATCCTCCACCACCACCTTCTCTAGCACGGTA
CTGGCATTTCCACTGCGGGTTATAACAATTGCAGACGCATGCAACAGATG
CGCGTGTTGCTGAGGCGTCCAGCAGCACATTGTGAAGGATGTGGGGGAGG
TGGAGCTGGGGGAGGAAGAGAGCCAGGCCCTGAGAAGCTTGAATGGCTGC
AAGGCCTCGTATACACGCAAGTCTTTCACGTGCATTAGTAAGCCCGGTAA
ATGGGGAAGAAGCAGTTCCGCTTCTTCTTCCATTATTTCTATAGCCAATT
GCACCGCTGCACCGACCACCAGTTCTGCTCCATTGATCGCCGCCAGCCGC
TGCAGTGCCCCGAGCAAAGCATTTCGACGACTGGTTAGCGCCCTTCGAAA
GGCAGGCCACAGCGCAGCAACATCTGAAAGGGTATAAACACACGATAACA
GCACATGTACATCAAGTATGACCTCAGCACTCAACACCTCAAGCAAGCCA
TTCACAGTTCCCTCCACAGACGAAGGAGAAGTTTCGAATTGTGTCAGTAA
CGCTGTTTTGGCGTCCCAATGCTGCGCAGCCATTGCTCCTTTGGCCAAAT
GCCGCAGGACAACTGCTGCTAACGCCTTACAGGTAGAGGATGAGGACATC
GATTCCAACGTGTGGAGGATGAAGGGGGCAAAGTGGCTATCTCTGCTGCT
ACTATTGTTACCCTTTTTGCTGATGTAACTTTTGGAGTCTTGAAGCAGCA
AGCGGAATGAGGGGCCACGTCCTCCCCGCAAGAGAGCAATCAGTGCCCGG
AGCGCCGCTTGTCGAATGTGCGCAGATGCTGAGGGCTCTGCTAGAACGTC
GAATACAAAATGGTGAACTCGGCATGTCAATAGCAGCTCGTATGTAACAG
AAGGTATGGGTGTAAGCGCCAAGCACGCAATTAGATGCATCGCCTGG back to topprotein sequence of jgi.p|Nanoce1779_2|592002 >mRNA_5280-protein ID=mRNA_5280-protein|Name=jgi.p|Nanoce1779_2|592002|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MSSHQDEAFLALLTIFSFFGTVGGLHQDPHLRRCKVTMHSAANLKSCPFR
GRRERWRRQRWRRVMLGRNAVQARGLGPSRLNQQILVVVIIVIIIVSSNN
SSSCAFRAAAGAVTSREMNSHCMTIHFRTTHISRFIASYSHPRPCMRLWS
AFDYRKGEAAPLRALPVSRGIIVEQGQLGGYTGRDLKPFLVYGGEYVTAS
EGIGACPGLATSLFVLELTGMGYLGVHLNQR* back to topmRNA from alignment at scaffold_13:62387..65433- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5280 ID=mRNA_5280|Name=jgi.p|Nanoce1779_2|592002|organism=Nannochloropsis oceanica|type=mRNA|length=3047bp|location=Sequence derived from alignment at scaffold_13:62387..65433- (Nannochloropsis oceanica)
CCCCCTCATCCTCCGCCTCCTCCTCCTCCTCTTTCTGCCCCCACCGCTGC
AATGGCTGTCCGTCCCCGGCCACTTGGAGGTGCCGCAGAAGCAGGGCTTC
TTGTGCGGACACCACCTGTTGATACAAGCCTAATTGCCCCTCGAGAGAGC
TCCGTAAAGTTTCATCCATAATCGCGGTGGAGAAGGCCGTCTGCGTCTCT
CTCAAAGCATGCCGTAGACACTGTACTTTCTGGTTGCCAGTCTGTGCAAA
ATCGCCGCCAAGAGATTCCCGGCTAGGGAGCCAAAATGAGGCCGGGAAGG
AGTGCAAACTTCGACCCAGGCCACGAGCCAACGCCGACACAGAAACCCGT
GGAGAGGCGCCCTGCTGCTGCTCCCGCTTCTTCACCTCCTGTTGTGTCGT
CTGGTTGCTACCCAGTCTCGAGGAATCTTCTGAACAACGAGCAAAAAGGC
TCCACTCCCGCTTCTCCCGAACGTAGGAAGTTACCACCTCCTCGATGAAT
CGGTGGGCCTGGAGGTGGCCGCATCGTGCATCGCTCATGGGAGTGAGTGC
CGCTAGAGGTCGGCCTCCGTCGGAATCATGATCAAAATATTGAACGTCGT
ACAACACCTCCGCGCCTGTGTCAGTTGGCGATGAAAGCACACGGACGGCT
GTCACAATGGCATTACATTGGGACCCGTCCCGCAACCGGCGACAACGCAC
CAGGCTTCCAATGTGAGGACGACGAATAGCAAATCCTTGCTCCCTTCCCT
TCTCTTCTTCTTCCTCCCATTCATCGTCATACCGCAACTGCTCCAGCGTA
CGGTGGGTTTCCCACGTCCGCTGAAGAATCGAAAGCGCAGCCGCCAGAAA
ATGGTGCCCCGATCCTTCGTAGTCTTGCAATAGGCCTAATACTTCCTGGG
ATGGTAGCACGTCCATCATATTCCAGGATTCTGCACACGAATACCTCACA
CCACTCAACCGACAATTATTCCCTTGCCCGTGATTTCGAAAAATTTCTAC
GTGGATTGACTCGATCTCGGTTAACCCCAGCTCTTGCTGTACCGCCTCTA
GCTCTGCACGCTCGACCAACGTCTCCCACTCACCCGCATCTTGCTCTCGG
AGCAGATGTCGTCTCACCAAGACGAGGCTTTCCTCGCTCTTTTGACTATC
TTCTCCTTCTTCGGCACTGTTGGAGGCCTTCACCAAGACCCACATCTGCG
ACGGTGTAAAGTTACCATGCATTCCGCGGCGAACCTCAAGTCGTGTCCAT
TCAGGGGTAGGCGAGAAAGGTGGAGAAGACAACGATGGAGGAGGGTGATG
CTCGGGCGAAACGCGGTACAGGCGAGAGGGCTGGGGCCCTCCAGACTCAA
CCAGCAAATCCTCGTCGTCGTCATCATCGTCATCATCATCGTCAGCAGCA
ACAACAGCAGTAGCTGTGCTTTCCGTGCTGCTGCTGGTGCTGTTACCTCC
CGGGAGATGAATAGTCACTGTATGACCATCCACTTCCGGACGACCCACAT
TTCGCGTTTCATTGCCAGCTACTCTCACCCCCGCCCCTGTATGCGCCTTT
GGTCGGCGTTCGATTATCGTAAGGGGGAAGCGGCTCCGCTCCGTGCTTTG
CCAGTAAGTAGAGGAATTATTGTCGAGCAAGGCCAGCTTGGAGGCTACAC
CGGTCGAGACTTGAAGCCATTTTTGGTCTATGGCGGGGAATACGTCACTG
CAAGTGAGGGGATTGGTGCGTGCCCAGGCCTGGCGACGTCGCTCTTCGTC
TTGGAGCTGACAGGTATGGGATACCTCGGAGTACACCTCAACCAACGCTA
AAAATGAGGGCAAGAGAGCAGCGAGGGCCTTGCGCTCTACGTGCTGCGCG
TCATCTTTGCTCTGGCTTGCTGTCGCTGCAGGGTGCACGACATTTGAATG
CAGGGTGCGGAGTATCTTACTCAATCTCCGACGCTCCAGCTCGTCGTATA
AGTCCACACCTGTCACCTCGATCATTAATCGCAGGGCATTGCATGCCGCG
GCCAATGGGAGAGTGGTTGTCTCTCCACATGCAAGCGTCCGACTACTGCT
GCTGCCTCCTACCGTCTCTGTGGTAGCCGTGGTAGCTGTGGAAAGATAGG
CAAGGTAGAGGTCCAGGGCATCCTCCACCACCACCTTCTCTAGCACGGTA
CTGGCATTTCCACTGCGGGTTATAACAATTGCAGACGCATGCAACAGATG
CGCGTGTTGCTGAGGCGTCCAGCAGCACATTGTGAAGGATGTGGGGGAGG
TGGAGCTGGGGGAGGAAGAGAGCCAGGCCCTGAGAAGCTTGAATGGCTGC
AAGGCCTCGTATACACGCAAGTCTTTCACGTGCATTAGTAAGCCCGGTAA
ATGGGGAAGAAGCAGTTCCGCTTCTTCTTCCATTATTTCTATAGCCAATT
GCACCGCTGCACCGACCACCAGTTCTGCTCCATTGATCGCCGCCAGCCGC
TGCAGTGCCCCGAGCAAAGCATTTCGACGACTGGTTAGCGCCCTTCGAAA
GGCAGGCCACAGCGCAGCAACATCTGAAAGGGTATAAACACACGATAACA
GCACATGTACATCAAGTATGACCTCAGCACTCAACACCTCAAGCAAGCCA
TTCACAGTTCCCTCCACAGACGAAGGAGAAGTTTCGAATTGTGTCAGTAA
CGCTGTTTTGGCGTCCCAATGCTGCGCAGCCATTGCTCCTTTGGCCAAAT
GCCGCAGGACAACTGCTGCTAACGCCTTACAGGTAGAGGATGAGGACATC
GATTCCAACGTGTGGAGGATGAAGGGGGCAAAGTGGCTATCTCTGCTGCT
ACTATTGTTACCCTTTTTGCTGATGTAACTTTTGGAGTCTTGAAGCAGCA
AGCGGAATGAGGGGCCACGTCCTCCCCGCAAGAGAGCAATCAGTGCCCGG
AGCGCCGCTTGTCGAATGTGCGCAGATGCTGAGGGCTCTGCTAGAACGTC
GAATACAAAATGGTGAACTCGGCATGTCAATAGCAGCTCGTATGTAACAG
AAGGTATGGGTGTAAGCGCCAAGCACGCAATTAGATGCATCGCCTGG back to topCoding sequence (CDS) from alignment at scaffold_13:62387..65433- >mRNA_5280 ID=mRNA_5280|Name=jgi.p|Nanoce1779_2|592002|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_13:62387..65433- (Nannochloropsis oceanica)
ATGTCGTCTCACCAAGACGAGGCTTTCCTCGCTCTTTTGACTATCTTCTC
CTTCTTCGGCACTGTTGGAGGCCTTCACCAAGACCCACATCTGCGACGGT
GTAAAGTTACCATGCATTCCGCGGCGAACCTCAAGTCGTGTCCATTCAGG
GGTAGGCGAGAAAGGTGGAGAAGACAACGATGGAGGAGGGTGATGCTCGG
GCGAAACGCGGTACAGGCGAGAGGGCTGGGGCCCTCCAGACTCAACCAGC
AAATCCTCGTCGTCGTCATCATCGTCATCATCATCGTCAGCAGCAACAAC
AGCAGTAGCTGTGCTTTCCGTGCTGCTGCTGGTGCTGTTACCTCCCGGGA
GATGAATAGTCACTGTATGACCATCCACTTCCGGACGACCCACATTTCGC
GTTTCATTGCCAGCTACTCTCACCCCCGCCCCTGTATGCGCCTTTGGTCG
GCGTTCGATTATCGTAAGGGGGAAGCGGCTCCGCTCCGTGCTTTGCCAGT
AAGTAGAGGAATTATTGTCGAGCAAGGCCAGCTTGGAGGCTACACCGGTC
GAGACTTGAAGCCATTTTTGGTCTATGGCGGGGAATACGTCACTGCAAGT
GAGGGGATTGGTGCGTGCCCAGGCCTGGCGACGTCGCTCTTCGTCTTGGA
GCTGACAGGTATGGGATACCTCGGAGTACACCTCAACCAACGCTAA back to top
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