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Properties
| Property Name | Value |
|---|
| TranscriptId | 592075 |
| Track | FilteredModels2 |
| ProteinId | 591989 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:49204..51203 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5278 ID=mRNA_5278|Name=jgi.p|Nanoce1779_2|591989|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
ACAGACGCCAACTTGACGTCTCGTCTTCAAAATGTTCCAGCGCGGAATTC
TTCTTGCCATGGCTTCGACTCTATTGCTACAGTCTACGATGGGTTTTTTG
CGTCCCTCGACCACCCTCTCTGCTACCCGAGTTGCCGCCGCCGCTGGCCT
CCGCTTCAGCCAGACCCGCCGCTCCATGGCCATGATCAGCACCGAGACCC
AGGGTGCTGCCGAGACTGAGGAGTTCCGTGTCTTCTTCAAGAAGGACGGC
AACAAGATCTCCCCCTGGCACGACATCCCCCTCAAGGCGGACGGCCAGAC
ATACAACTTTATCACCGAGATCCCCAAGTTCACCAAGGCTAAGATGGAGG
TGGCGACCAAGGAGGCGATGAACCCCATCTCCCAGGACATGAAGAAGGGC
AAGCTTCGTTACTACCACGGCCCTATCTTTTGGAACTACGGCCTCTTGCC
CCAGACGTGGGAGGACCCCAACCACGAGCACCCCGAGCTCAAGGTGAAGG
GGGACAACGACCCTGTGGACGTGGTCGAGATTGGTAGCGTTGCTTTGACC
GTCGGTTCGGTGACGCCGGTCAAGCCCCTGGGAGTGCTTGCCATGATTGA
TGACGGAGAGTTGGACTGGAAAATCATTGCGATCGCTGCGTCTGACCCTC
TGGCTAACGAATTGAATGATATTGCGGATGTGGAGGCCAAATTACCTGGG
GTGGTGTCGGGGATTAGGGAGTGGTTCCGCTGGTACAAGACGCCCGATGA
CAAGCCCATTAATGCGTTTGGGTTTGGCGAGAGGGCCCTGGCCAAGGCGG
ATGCGCTCAAGGTAGGGAGGAGAGGGAGAGACATAGGGACGGTGGGAAAG
AGGGCGGATGCTTATTGACAGGAACGGAAGGGGGAGAATTTCATGTTGTG
TATGAGTCCTTGTCCACGTTTGCCTTTGTCATCTGTGTCTGCCTATGTGA
GACCGCAGATCTTTTAGCTAACCGTCTCTCTATCCCCGACATTTACACGT
CTCGTTCAAATAGGTTATCGATGAGACCCATGCCGCTTGGAAGGGGTTCA
TGAATGGCAAGACCGATGGCGGCAAGCTCTGGAAGGCATAAAAACATGGG
TACTTCTGGCCAAGAGAGACGGTGCTTGAAAGCAATGAGAAGGGAGACTT
GACCCAAGGGATGGGATGGGGCGTGTGTAATAAAACGTTTGAGCTTGGAA
ACTTTGCTTCGCTTGATGCAGGACGGTTCCAGATTGGCAAAAGCCAAAGA
ATCTAAGGAGAAAAATACACACGCATACCCT back to topprotein sequence of jgi.p|Nanoce1779_2|591989 >mRNA_5278-protein ID=mRNA_5278-protein|Name=jgi.p|Nanoce1779_2|591989|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MFQRGILLAMASTLLLQSTMGFLRPSTTLSATRVAAAAGLRFSQTRRSMA
MISTETQGAAETEEFRVFFKKDGNKISPWHDIPLKADGQTYNFITEIPKF
TKAKMEVATKEAMNPISQDMKKGKLRYYHGPIFWNYGLLPQTWEDPNHEH
PELKVKGDNDPVDVVEIGSVALTVGSVTPVKPLGVLAMIDDGELDWKIIA
IAASDPLANELNDIADVEAKLPGVVSGIREWFRWYKTPDDKPINAFGFGE
RALAKADALKVGRRGRDIGTVGKRADAY* back to topmRNA from alignment at scaffold_13:49204..51203+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5278 ID=mRNA_5278|Name=jgi.p|Nanoce1779_2|591989|organism=Nannochloropsis oceanica|type=mRNA|length=2000bp|location=Sequence derived from alignment at scaffold_13:49204..51203+ (Nannochloropsis oceanica)
ACAGACGCCAACTTGACGTCTCGTCTTCAAAATGTTCCAGCGCGGAATTC
TTCTTGCCATGGCTTCGACTCTATTGCTACAGTCTACGATGGGTTTTTTG
CGTCCCTCGACCACCCTCTCTGCTACCCGAGTTGCCGCCGCCGCTGGCCT
CCGCTTCAGCCAGACCCGCCGCTCCATGGCCATGATCAGCACCGAGACCC
AGGGTGCTGCCGAGACTGAGGAGTTCCGTGTCTTCTTCAAGGTACTTTTC
AAGGAGCTTGCGGGTCGTGTAGTTCGTGGGTGGGGTTGACGGCTGGTTGC
CTTCCCGAGCAAGGGAGGCGTATACTTGAAGCCAACATACGCGTGAAAAC
TCATGATTCGATACCATACTCATGATCCATTGAATCTCTCACATGTCTAA
ACGAGTAGAAGGACGGCAACAAGATCTCCCCCTGGCACGACATCCCCCTC
AAGGCGGACGGCCAGACATACAACTTTATCACCGAGATCCCCAAGTTGTA
AGTCGCTTGTCCTTTCCCTTCTTCTCACTCTCTCATCTTACTATCTGTTT
AAGTGTCTCGCTGACATGATTTATGTCCTTCCCCCTTTTCCTATTTTTTC
TGGCAAACAGCACCAAGGCTAAGATGGAGGTGGCGACCAAGGAGGCGATG
AACCCCATCTCCCAGGACATGAAGAAGGGCAAGCTTCGGTAAGTGACTGC
TAGGACGCCAACACTGAAATGGGGGAAACCACTTGATTTTTATATAATTC
TAAAGCACTTCAGTAGTAGTCGTTAGGGGAGGATTGGAGTCTCCCCGCAC
GCTCTATCCGTATTTCGTATCACCAATTGTTTTTCTTTCCCGGGACACTA
ACTGTGTCTTCCCTTTCTCCCTTCCTCCCTCCTTCCTCTCTCCCGTCCTC
CCTTTCTCCCTCCCTCCTTCCCTCCCTCCCTCCTCGCTCCAGTTACTACC
ACGGCCCTATCTTTTGGAACTACGGCCTCTTGCCCCAGACGTGGGAGGAC
CCCAACCACGAGCACCCCGAGGTATGTCCTCCCTCCCTCCCTCTCTCCTT
CCCTCCCTTCCATTCTTCCATTCCTTGTCTCGTTGATTTGGACGTGTACG
TGACTTAATCGCCTTTTTATGGCTCGATGCGACGTTGACTGGGGCTTTAG
CTCTTCTTCTTCTCACCTCTCTCCCTCCCTTCCTTATTCTCTACTTTTTT
CCCCAGCTCAAGGTGAAGGGGGACAACGACCCTGTGGACGTGGTCGAGAT
TGGTAGCGTTGCTTTGACCGTCGGTTCGGTGACGCCGGTCAAGCCCCTGG
GAGTGCTTGCCATGATTGATGACGGAGAGTTGGACTGGAAAATCATTGCG
ATCGCTGCGTCTGACCCTCTGGCTAACGAATTGAATGATATTGCGGATGT
GGAGGCCAAATTACCTGGGGTGGTGTCGGGGATTAGGGAGTGGTTCCGCT
GGTACAAGACGCCCGATGACAAGCCCATTAATGCGTTTGGGTTTGGCGAG
AGGGCCCTGGCCAAGGCGGATGCGCTCAAGGTAGGGAGGAGAGGGAGAGA
CATAGGGACGGTGGGAAAGAGGGCGGATGCTTATTGACAGGAACGGAAGG
GGGAGAATTTCATGTTGTGTATGAGTCCTTGTCCACGTTTGCCTTTGTCA
TCTGTGTCTGCCTATGTGAGACCGCAGATCTTTTAGCTAACCGTCTCTCT
ATCCCCGACATTTACACGTCTCGTTCAAATAGGTTATCGATGAGACCCAT
GCCGCTTGGAAGGGGTTCATGAATGGCAAGACCGATGGCGGCAAGCTCTG
GAAGGCATAAAAACATGGGTACTTCTGGCCAAGAGAGACGGTGCTTGAAA
GCAATGAGAAGGGAGACTTGACCCAAGGGATGGGATGGGGCGTGTGTAAT
AAAACGTTTGAGCTTGGAAACTTTGCTTCGCTTGATGCAGGACGGTTCCA
GATTGGCAAAAGCCAAAGAATCTAAGGAGAAAAATACACACGCATACCCT
back to topCoding sequence (CDS) from alignment at scaffold_13:49204..51203+ >mRNA_5278 ID=mRNA_5278|Name=jgi.p|Nanoce1779_2|591989|organism=Nannochloropsis oceanica|type=CDS|length=4185bp|location=Sequence derived from alignment at scaffold_13:49204..51203+ (Nannochloropsis oceanica)
ATGTTCCAGCGCGGAATTCTTCTTGCCATGGCTTCGACTCTATTGCTACA
GTCTACGATGGGTTTTTTGCGTCCCTCGACCACCCTCTCTGCTACCCGAG
TTGCCGCCGCCGCTGGCCTCCGCTTCAGCCAGACCCGCCGCTCCATGGCC
ATGATCAGCACCGAGACCCAGGGTGCTGCCGAGACTGAGGAGTTCCGTGT
CTTCTTCAAGAAGGACGGCAACAAGATCTCCCCCTGGCACGACATCCCCC
TCAAGGCGGACGGCCAGACATACAACTTTATCACCGAGATCCCCAAGTTC
ACCAAGGCTAAGATGGAGGTGGCGACCAAGGAGGCGATGAACCCCATCTC
CCAGGACATGAAGAAGGGCAAGCTTCGTTACTACCACGGCCCTATCTTTT
GGAACTACGGCCTCTTGCCCCAGACGTGGGAGGACCCCAACCACGAGCAC
CCCGAGCTCAAGGTGAAGGGGGACAACGACCCTGTGGACGTGGTCGAGAT
TGGTAGCGTTGCTTTGACCGTCGGTTCGGTGACGCCGGTCAAGCCCCTGG
GAGTGCTTGCCATGATTGATGACGGAGAGTTGGACTGGAAAATCATTGCG
ATCGCTGCGTCTGACCCTCTGGCTAACGAATTGAATGATATTGCGGATGT
GGAGGCCAAATTACCTGGGGTGGTGTCGGGGATTAGGGAGTGGTTCCGCT
GGTACAAGACGCCCGATGACAAGCCCATTAATGCGTTTGGGTTTGGCGAG
AGGGCCCTGGCCAAGGCGGATGCGCTCAAGGTAGGGAGGAGAGGGAGAGA
CATAGGGACGGTGGGAAAGAGGGCGGATGCTTATTGAATGTTCCAGCGCG
GAATTCTTCTTGCCATGGCTTCGACTCTATTGCTACAGTCTACGATGGGT
TTTTTGCGTCCCTCGACCACCCTCTCTGCTACCCGAGTTGCCGCCGCCGC
TGGCCTCCGCTTCAGCCAGACCCGCCGCTCCATGGCCATGATCAGCACCG
AGACCCAGGGTGCTGCCGAGACTGAGGAGTTCCGTGTCTTCTTCAAGAAG
GACGGCAACAAGATCTCCCCCTGGCACGACATCCCCCTCAAGGCGGACGG
CCAGACATACAACTTTATCACCGAGATCCCCAAGTTCACCAAGGCTAAGA
TGGAGGTGGCGACCAAGGAGGCGATGAACCCCATCTCCCAGGACATGAAG
AAGGGCAAGCTTCGTTACTACCACGGCCCTATCTTTTGGAACTACGGCCT
CTTGCCCCAGACGTGGGAGGACCCCAACCACGAGCACCCCGAGCTCAAGG
TGAAGGGGGACAACGACCCTGTGGACGTGGTCGAGATTGGTAGCGTTGCT
TTGACCGTCGGTTCGGTGACGCCGGTCAAGCCCCTGGGAGTGCTTGCCAT
GATTGATGACGGAGAGTTGGACTGGAAAATCATTGCGATCGCTGCGTCTG
ACCCTCTGGCTAACGAATTGAATGATATTGCGGATGTGGAGGCCAAATTA
CCTGGGGTGGTGTCGGGGATTAGGGAGTGGTTCCGCTGGTACAAGACGCC
CGATGACAAGCCCATTAATGCGTTTGGGTTTGGCGAGAGGGCCCTGGCCA
AGGCGGATGCGCTCAAGGTAGGGAGGAGAGGGAGAGACATAGGGACGGTG
GGAAAGAGGGCGGATGCTTATTGAATGTTCCAGCGCGGAATTCTTCTTGC
CATGGCTTCGACTCTATTGCTACAGTCTACGATGGGTTTTTTGCGTCCCT
CGACCACCCTCTCTGCTACCCGAGTTGCCGCCGCCGCTGGCCTCCGCTTC
AGCCAGACCCGCCGCTCCATGGCCATGATCAGCACCGAGACCCAGGGTGC
TGCCGAGACTGAGGAGTTCCGTGTCTTCTTCAAGAAGGACGGCAACAAGA
TCTCCCCCTGGCACGACATCCCCCTCAAGGCGGACGGCCAGACATACAAC
TTTATCACCGAGATCCCCAAGTTCACCAAGGCTAAGATGGAGGTGGCGAC
CAAGGAGGCGATGAACCCCATCTCCCAGGACATGAAGAAGGGCAAGCTTC
GTTACTACCACGGCCCTATCTTTTGGAACTACGGCCTCTTGCCCCAGACG
TGGGAGGACCCCAACCACGAGCACCCCGAGCTCAAGGTGAAGGGGGACAA
CGACCCTGTGGACGTGGTCGAGATTGGTAGCGTTGCTTTGACCGTCGGTT
CGGTGACGCCGGTCAAGCCCCTGGGAGTGCTTGCCATGATTGATGACGGA
GAGTTGGACTGGAAAATCATTGCGATCGCTGCGTCTGACCCTCTGGCTAA
CGAATTGAATGATATTGCGGATGTGGAGGCCAAATTACCTGGGGTGGTGT
CGGGGATTAGGGAGTGGTTCCGCTGGTACAAGACGCCCGATGACAAGCCC
ATTAATGCGTTTGGGTTTGGCGAGAGGGCCCTGGCCAAGGCGGATGCGCT
CAAGGTAGGGAGGAGAGGGAGAGACATAGGGACGGTGGGAAAGAGGGCGG
ATGCTTATTGAATGTTCCAGCGCGGAATTCTTCTTGCCATGGCTTCGACT
CTATTGCTACAGTCTACGATGGGTTTTTTGCGTCCCTCGACCACCCTCTC
TGCTACCCGAGTTGCCGCCGCCGCTGGCCTCCGCTTCAGCCAGACCCGCC
GCTCCATGGCCATGATCAGCACCGAGACCCAGGGTGCTGCCGAGACTGAG
GAGTTCCGTGTCTTCTTCAAGAAGGACGGCAACAAGATCTCCCCCTGGCA
CGACATCCCCCTCAAGGCGGACGGCCAGACATACAACTTTATCACCGAGA
TCCCCAAGTTCACCAAGGCTAAGATGGAGGTGGCGACCAAGGAGGCGATG
AACCCCATCTCCCAGGACATGAAGAAGGGCAAGCTTCGTTACTACCACGG
CCCTATCTTTTGGAACTACGGCCTCTTGCCCCAGACGTGGGAGGACCCCA
ACCACGAGCACCCCGAGCTCAAGGTGAAGGGGGACAACGACCCTGTGGAC
GTGGTCGAGATTGGTAGCGTTGCTTTGACCGTCGGTTCGGTGACGCCGGT
CAAGCCCCTGGGAGTGCTTGCCATGATTGATGACGGAGAGTTGGACTGGA
AAATCATTGCGATCGCTGCGTCTGACCCTCTGGCTAACGAATTGAATGAT
ATTGCGGATGTGGAGGCCAAATTACCTGGGGTGGTGTCGGGGATTAGGGA
GTGGTTCCGCTGGTACAAGACGCCCGATGACAAGCCCATTAATGCGTTTG
GGTTTGGCGAGAGGGCCCTGGCCAAGGCGGATGCGCTCAAGGTAGGGAGG
AGAGGGAGAGACATAGGGACGGTGGGAAAGAGGGCGGATGCTTATTGAAT
GTTCCAGCGCGGAATTCTTCTTGCCATGGCTTCGACTCTATTGCTACAGT
CTACGATGGGTTTTTTGCGTCCCTCGACCACCCTCTCTGCTACCCGAGTT
GCCGCCGCCGCTGGCCTCCGCTTCAGCCAGACCCGCCGCTCCATGGCCAT
GATCAGCACCGAGACCCAGGGTGCTGCCGAGACTGAGGAGTTCCGTGTCT
TCTTCAAGAAGGACGGCAACAAGATCTCCCCCTGGCACGACATCCCCCTC
AAGGCGGACGGCCAGACATACAACTTTATCACCGAGATCCCCAAGTTCAC
CAAGGCTAAGATGGAGGTGGCGACCAAGGAGGCGATGAACCCCATCTCCC
AGGACATGAAGAAGGGCAAGCTTCGTTACTACCACGGCCCTATCTTTTGG
AACTACGGCCTCTTGCCCCAGACGTGGGAGGACCCCAACCACGAGCACCC
CGAGCTCAAGGTGAAGGGGGACAACGACCCTGTGGACGTGGTCGAGATTG
GTAGCGTTGCTTTGACCGTCGGTTCGGTGACGCCGGTCAAGCCCCTGGGA
GTGCTTGCCATGATTGATGACGGAGAGTTGGACTGGAAAATCATTGCGAT
CGCTGCGTCTGACCCTCTGGCTAACGAATTGAATGATATTGCGGATGTGG
AGGCCAAATTACCTGGGGTGGTGTCGGGGATTAGGGAGTGGTTCCGCTGG
TACAAGACGCCCGATGACAAGCCCATTAATGCGTTTGGGTTTGGCGAGAG
GGCCCTGGCCAAGGCGGATGCGCTCAAGGTAGGGAGGAGAGGGAGAGACA
TAGGGACGGTGGGAAAGAGGGCGGATGCTTATTGA back to top
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