jgi.p|Nanoce1779_2|591983, mRNA_5276 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591983
Unique NamemRNA_5276
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1033
Alignment locationscaffold_13:46137..47169 -

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Properties
Property NameValue
TranscriptId592069
TrackFilteredModels2
ProteinId591983
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:46137..47169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591983gene_5276Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591983mRNA_5276-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5276CDS_5276Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5276 ID=mRNA_5276|Name=jgi.p|Nanoce1779_2|591983|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp
AGGTAGGTAGGGAAGTGCGCGAGGGAGAAAGAAGAATGTGGCCTGGTCGC
GGGAGCAACAGCGCAAGCCGCACGGTCGCAGCTGCTCCGTCAGGGGGGGC
GGCGCAGGAGGTGATCATTGTACCCCGCAATTTCAAGCTGCTCGAGGAGC
TCGACCACGCCGAGAAAGGGCACGACCCAACCATTTCCCTAGGACTGCAG
AATCAGGATGACATTTTTTTGGTGGCTTGGAATGGCTCCATCTTCGGCCC
GCCAGGCACGACGTTCGAGGGCCGGTTGTTTGAACTCAAGGTGGAATGCG
GCGACCGCTACCCAGAATTGCCCCCAGCCGTCCGCTTTGTCAGCCGCGTG
AATTTGCCGTGCGTTGACCCGACTACCGGGGTAGTGCAGCCGCACAAATT
GTCGATCTTGAGTAATTGGGACAGGGCATTTACGATGGAAAGGGTGTTGA
ACGAGCTTAGAAGAGAGATGATGAACCAAGCCAATCGACGGCTGCCCCAG
CCGCCTGAGGGGAGTCGATTTTGAGGAGGAGAACGTAGAGGAAAATAGGG
CAAGACAGTGAAGGAAAGGGAGAAAAAGTTGCCCGTGAAGTACGAGAGAT
GACCAAACGTAAGTGTGTTGCGGAAACAAAGGAACAGAAGAAAGACAATT
GATGAGGAGGACGAGTACAAGGGGGAGAGGGAGGAAGGAGTTGAGGGGTA
TATCACTGGCGGAAGACAAAAGATATACTTTGACGCACAGAGCATCGGAG
GTGAAGGAGATGGGAAGGTCGAAAGCGAAGGGGATGCTGTCGAGTTTTTG
GCTGATGGAGAAGAGGGATGAGAGGGAGAGAAGTAAGAGGAGGATGGTGT
GGAGGAAGATAAAGACAGAAAGTCAGGGAAAAGAATATAGGAAGAGGCGG
ACATCTGAAACCATGGTTGTGTATAAAAGGAAAAGAAGAGATGGAGGGAA
GGAAGGAGGCGAAGCGCAGTTCAACAGACGAAGAGGAGCAGTAGCAACAT
AATGAAAGAAAGGAAGTAACATGCAACGTCGTA
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protein sequence of jgi.p|Nanoce1779_2|591983

>mRNA_5276-protein ID=mRNA_5276-protein|Name=jgi.p|Nanoce1779_2|591983|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MWPGRGSNSASRTVAAAPSGGAAQEVIIVPRNFKLLEELDHAEKGHDPTI
SLGLQNQDDIFLVAWNGSIFGPPGTTFEGRLFELKVECGDRYPELPPAVR
FVSRVNLPCVDPTTGVVQPHKLSILSNWDRAFTMERVLNELRREMMNQAN
RRLPQPPEGSRF*
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mRNA from alignment at scaffold_13:46137..47169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5276 ID=mRNA_5276|Name=jgi.p|Nanoce1779_2|591983|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_13:46137..47169- (Nannochloropsis oceanica)
AGGTAGGTAGGGAAGTGCGCGAGGGAGAAAGAAGAATGTGGCCTGGTCGC
GGGAGCAACAGCGCAAGCCGCACGGTCGCAGCTGCTCCGTCAGGGGGGGC
GGCGCAGGAGGTGATCATTGTACCCCGCAATTTCAAGCTGCTCGAGGAGC
TCGACCACGCCGAGAAAGGGCACGACCCAACCATTTCCCTAGGACTGCAG
AATCAGGATGACATTTTTTTGGTGGCTTGGAATGGCTCCATCTTCGGCCC
GCCAGGCACGACGTTCGAGGGCCGGTTGTTTGAACTCAAGGTGGAATGCG
GCGACCGCTACCCAGAATTGCCCCCAGCCGTCCGCTTTGTCAGCCGCGTG
AATTTGCCGTGCGTTGACCCGACTACCGGGGTAGTGCAGCCGCACAAATT
GTCGATCTTGAGTAATTGGGACAGGGCATTTACGATGGAAAGGGTGTTGA
ACGAGCTTAGAAGAGAGATGATGAACCAAGCCAATCGACGGCTGCCCCAG
CCGCCTGAGGGGAGTCGATTTTGAGGAGGAGAACGTAGAGGAAAATAGGG
CAAGACAGTGAAGGAAAGGGAGAAAAAGTTGCCCGTGAAGTACGAGAGAT
GACCAAACGTAAGTGTGTTGCGGAAACAAAGGAACAGAAGAAAGACAATT
GATGAGGAGGACGAGTACAAGGGGGAGAGGGAGGAAGGAGTTGAGGGGTA
TATCACTGGCGGAAGACAAAAGATATACTTTGACGCACAGAGCATCGGAG
GTGAAGGAGATGGGAAGGTCGAAAGCGAAGGGGATGCTGTCGAGTTTTTG
GCTGATGGAGAAGAGGGATGAGAGGGAGAGAAGTAAGAGGAGGATGGTGT
GGAGGAAGATAAAGACAGAAAGTCAGGGAAAAGAATATAGGAAGAGGCGG
ACATCTGAAACCATGGTTGTGTATAAAAGGAAAAGAAGAGATGGAGGGAA
GGAAGGAGGCGAAGCGCAGTTCAACAGACGAAGAGGAGCAGTAGCAACAT
AATGAAAGAAAGGAAGTAACATGCAACGTCGTA
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Coding sequence (CDS) from alignment at scaffold_13:46137..47169-

>mRNA_5276 ID=mRNA_5276|Name=jgi.p|Nanoce1779_2|591983|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_13:46137..47169- (Nannochloropsis oceanica)
ATGTGGCCTGGTCGCGGGAGCAACAGCGCAAGCCGCACGGTCGCAGCTGC
TCCGTCAGGGGGGGCGGCGCAGGAGGTGATCATTGTACCCCGCAATTTCA
AGCTGCTCGAGGAGCTCGACCACGCCGAGAAAGGGCACGACCCAACCATT
TCCCTAGGACTGCAGAATCAGGATGACATTTTTTTGGTGGCTTGGAATGG
CTCCATCTTCGGCCCGCCAGGCACGACGTTCGAGGGCCGGTTGTTTGAAC
TCAAGGTGGAATGCGGCGACCGCTACCCAGAATTGCCCCCAGCCGTCCGC
TTTGTCAGCCGCGTGAATTTGCCGTGCGTTGACCCGACTACCGGGGTAGT
GCAGCCGCACAAATTGTCGATCTTGAGTAATTGGGACAGGGCATTTACGA
TGGAAAGGGTGTTGAACGAGCTTAGAAGAGAGATGATGAACCAAGCCAAT
CGACGGCTGCCCCAGCCGCCTGAGGGGAGTCGATTTTGA
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Synonyms
Publications