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Properties
| Property Name | Value |
|---|
| TranscriptId | 62520 |
| Track | FilteredModels2 |
| ProteinId | 62434 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:40451..43310 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5274 ID=mRNA_5274|Name=jgi.p|Nanoce1779_2|62434|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp
CTTGGTTTTCCTCTTCATGAAGTTCAACGGCTTGATAACGGGCCCCAAGT
CTCCCGACGTCCTATGGTCTGTTCATCCTACACTAGAGGCGGAAATGTGC
ACCGCTCAGTCCCCATCCTTATCTATCCTCTCTTTCGTCATTCTAATCCG
GGCATTCAGTTTGAGAGTTACAGGTGCTCGTGTCCACGGGACCACGACAT
TCAAGTTGCCGAAGCACAAAGTAAAGGGCCCATCTGCCTCTTGCGTGCCG
AGGAGATGCCCATGCTCACAAACCAATCCGAGCCGACCGTCCGTGTCTTT
GACCACATGAGAAAGTCGCCATTCGACTTTCAGAAATTTTGTGGAGTTAT
CTCGTCCCCTCACTGCCCCCCCCCATAGCCACACAGTAAGCAAGAAGCAA
CAAAAGCGAGGAGGACGCCATCCAAATCAACAACCACAAATCACCAGCAA
CCATGAACAACAGCGGGATGCGACGTAAGGAAGTCTACAACCGGACGGTG
GATCTGTATGCTATCCTTGGCCTCGACAAAGGCGCCAGTGCCGGTCAAAT
AAGCAAGGCCTACAAATCGCTCGCCAAACGGTATCATCCCGACCGCAGCG
TCGGCAACGACAAGGATGAAAATACGGAGAAATTCAAGAAGATTTGCGAG
GCGTACAGCATTCTGTCCGACCAACGACGCCGGCGCCAGTATGATGTGTA
CGGGGGCAACCCATCCGAGATGGAAGATTCTGCCTATGAAATGGAGGGCC
AAAACAGCATCACGAGAGTTTTCGGTGCAGTGTGGTCAGCCTTTGGCGCA
GTACTTCACACAGAAATCGGTGCTAGCACCCTGATTCAGGCGCAGGAGTT
ATGTGCGAGGAGTGCGGCGGCAGCGGCAGCCGCAGCCGCAGCCGCAGTAT
CAGGAGGAGAGGAAGGAAAGCCGTCGACGACCAAAATAAATGAGGCTAAT
AAGGAGGGAAAGAAGGTGACGGAGCTAAAACTGGGTCATGGAATAACGGG
GTCGACGGGACGGCAAGATAGTGTATATTATGTTTTGAGACTGTCGGAAG
CGGAAGCGGCGAACGGGGTGATTGTGAGTTGTAATTCTTCCAACAAAAGC
CGCTTTAAGCTTATCTGTTTCGACCACGAGGGGGCCGTGCGATATGTGCA
GGAGAGCTCATTGACGAGCGATAAGAAATTCACGGTGGCCAACATGTTCT
TGGTCCCGTTCGAGACGATCATCTCCGTGGCGCCTCCCCCGGTGGGTGGT
GGGTTGTTAGACCACCCGCAGATCTTCGAAAGAGTGCGCAACATGACGGC
CGAGGCCAGGACGCTGCGTGCAGGAGAGCATTTGCTCTGTGTGTATGGGG
ATAACTGGTTGAATAACACCCCTTACACACTGACGGCGTTGCTTGCTGAA
TTGTCCTCGGGAGTAGTCCAGGCGGTAAAAGACGTGGACGCGGAGCTGAG
GGAGAAGAAGAAGGAGGTGGAGGAGTTGGAAGACGAGTACATCCGAGCCA
AAATGGTGTTTGACCGGGTCTCGGACCGAGTCGCAGAGCAGACGGCGGTG
ACGGAGGGACTGATCAACAAGAGGGAAGTTGCCTTCAACATATTTATCGA
AGAAAGCCTTAGGAAGTACTCCAATAAGCACGTGGGGCTCGGTGGACGGC
TGCCCACTGCTGCTGCTGTGCCTGCTGCTGCTATGCCAGTGGCCAATATG
GCTTTGGACACGCCACAAGGGGTTGAGGTGGCAGGAGGAAAAGCCGAGCA
CCAGCGCGCTGGGTCGTTGACATCGTCCAATTCGGATGGGGCCACAGTGG
GTGCCAAGAACAAGGGCCGATGATTGCCAGCTAACTGACGCGTGATCAAG
AGGAAGGTGGAGGGTGGAAAGGAGAGAGGGAGGCGGAAAGCTACACATAC
GCTCATACATAGAAACGAGGCATAGATATTGATGGACACATAGAGGAGAT
AGCTTTCCAAAGGAACAGAAAAAGGGTGAGGAGAAGGTGATGGTAGTCGA
AAAAGAGGGGCAAAAGGAGCAAAAAAAGGAGAGGGAAAAACGATAATGGA
CAGAGAGATGTACGGCCGGAAGAAACGGAGGAAAAGGGACAAGAAGCCGC
GCCGCACGACGATATTTCGTATTCTGATTTTGACAGGAGAAGGACGAAGG
AGGAAAGAGGAACAAAACACGCCACTCATTTTAGCCACTGTATTTTTTT back to topprotein sequence of jgi.p|Nanoce1779_2|62434 >mRNA_5274-protein ID=mRNA_5274-protein|Name=jgi.p|Nanoce1779_2|62434|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MNNSGMRRKEVYNRTVDLYAILGLDKGASAGQISKAYKSLAKRYHPDRSV
GNDKDENTEKFKKICEAYSILSDQRRRRQYDVYGGNPSEMEDSAYEMEGQ
NSITRVFGAVWSAFGAVLHTEIGASTLIQAQELCARSAAAAAAAAAAAVS
GGEEGKPSTTKINEANKEGKKVTELKLGHGITGSTGRQDSVYYVLRLSEA
EAANGVIVSCNSSNKSRFKLICFDHEGAVRYVQESSLTSDKKFTVANMFL
VPFETIISVAPPPVGGGLLDHPQIFERVRNMTAEARTLRAGEHLLCVYGD
NWLNNTPYTLTALLAELSSGVVQAVKDVDAELREKKKEVEELEDEYIRAK
MVFDRVSDRVAEQTAVTEGLINKREVAFNIFIEESLRKYSNKHVGLGGRL
PTAAAVPAAAMPVANMALDTPQGVEVAGGKAEHQRAGSLTSSNSDGATVG
AKNKGR* back to topmRNA from alignment at scaffold_13:40451..43310- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5274 ID=mRNA_5274|Name=jgi.p|Nanoce1779_2|62434|organism=Nannochloropsis oceanica|type=mRNA|length=2860bp|location=Sequence derived from alignment at scaffold_13:40451..43310- (Nannochloropsis oceanica)
CTTGGTTTTCCTCTTCATGAAGTTCAACGGCTTGATAACGGGCCCCAAGT
CTCCCGACGTCCTATGGTCTGTTCATCCTACACTAGAGGCGGAAATGTGC
ACCGCTCAGTCCCCATCCTTATCTATCCTCTCTTTCGTCATTCTAATCCG
GGCATTCAGTTTGAGAGTTACAGGTGCTCGTGTCCACGGGACCACGACAT
TCAAGTTGCCGAAGCACAAAGTAAAGGGCCCATCTGCCTCTTGCGTGCCG
AGGAGATGCCCATGCTCACAAACCAATCCGAGCCGACCGTCCGTGTCTTT
GACCACATGAGAAAGTCGCCATTCGACTTTCAGAAATTTTGTGGAGTTAT
CTCGTCCCCTCACTGCCCCCCCCCATAGCCACACAGTAAGCAAGAAGCAA
CAAAAGCGAGGAGGACGCCATCCAAATCAACAACCACAAATCACCAGCAA
CCATGAACAACAGCGGGATGCGACGTAAGGAAGTCTACAACCGGACGGTG
GATCTGTATGCTGTAAGTTTATTGGGGAGGGTGTGCATGAATGTGTGCGG
CGCGGGCTAGGGGCGGTGTGCAGGAGGGGAGATGATGCATTTATGTTGTG
CCAAGGCAGGATGTGGGGTTGATTGTGTTACAGTTGTAGATGCATTGGAA
GTCTTCCTACGGAGATAAGAGCATAATTGACATCCCGACTGCTTCCACGG
CTTCAGTCGAAATTTTGTGTTACCAGGCTTTACTCCCTTCTGCGCTTGAC
ACTCCCGTAGACACTTTTCTTTCCAAGTGCACTTGGATAGGAAAGAGATG
TGCAGGCAACATATCCTACCCTCCTTTTTGCTCTTTGCAAGTCTCATACA
CACACTTTTTAACTCTTGCACACTCTTCCCTCTCTTTAATCTCCACGTCC
GTCACACGTCAAAGATCCTTGGCCTCGACAAAGGCGCCAGTGCCGGTCAA
ATAAGCAAGGCCTACAAATCGCTCGCCAAACGGTATCATCCCGACCGCAG
CGTCGGCAACGACAAGGATGAAAATACGGAGAAATTCAAGAAGATTTGCG
AGGCGTACAGCATTCTGTCCGACCAACGACGCCGGCGCCAGTATGATGTG
TACGGGGGCAACCCATCCGAGATGGAAGATTCTGCCTATGAAATGGAGGG
CCAAAACAGCATCACGAGAGTTTTCGGTGCAGTGTGGTCAGCCTTTGGCG
CAGTACTTCACACAGAAATCGGTGCTAGCACCCTGATTCAGGCGCAGGAG
TTATGTGCGAGGAGTGCGGCGGCAGCGGCAGCCGCAGCCGCAGCCGCAGT
ATCAGGAGGAGAGGAAGGAAAGCCGTCGACGACCAAAATAAATGAGGCTA
ATAAGGAGGGAAAGAAGGTGACGGAGCTAAAACTGGGTCATGGAATAACG
GGGTCGACGGGACGGCAAGATAGTGTATATTATGTTTTGAGACTGTCGGA
AGCGGAAGCGGCGAACGGGGTGATTGTGAGTTGTAATTCTTCCAACAAAA
GCCGCTTTAAGCTTATCTGTTTCGACCACGAGGGGGCCGTGCGATATGTG
CAGGAGAGCTCATTGACGAGCGATAAGAAATTCACGGTGGCCAACATGTT
CTTGGTCCCGTTCGAGACGATCATCTCCGTGGCGCCTCCCCCGGTGGGTG
GTGGGTTGTTAGACCACCCGCAGATCTTCGAAAGAGTGCGCAACATGACG
GCCGAGGCCAGGACGCTGCGTGCAGGAGAGCATTTGCTCTGTGTGTATGG
GGATAACTGGTTGAATAACACCCCTTACACACTGACGGCGTTGCTTGCTG
AATTGTCCTCGGGAGTAGTCCAGGCGGTAAAAGACGTGGACGCGGAGCTG
AGGGAGAAGAAGAAGGAGGTGGAGGAGTTGGAAGACGAGTACATCCGAGC
CAAAATGGTGTTTGACCGGGTCTCGGACCGAGTCGCAGAGCAGACGGCGG
TGACGGAGGGACTGATCAACAAGAGGGAAGTTGCCTTCAACATATTTATC
GAAGAAAGCCTTAGGAAGTACTCCAATAAGCACGTGGGGCTCGGTGGACG
GCTGCCCACTGCTGCTGCTGTGCCTGCTGCTGCTATGCCAGTGGCCAATA
TGGCTTTGGACACGCCACAAGGGGTTGAGGTGGCAGGAGGAAAAGCCGAG
CACCAGCGCGCTGGGTCGTTGACATCGTCCAATTCGGATGGGGCCACAGT
GGGTGCGTCAGAGATCGGGCAGGACGTCAAGGAATCCGTCCCTCCTGCCA
CTGGAGGAAAGGGAGGAGGAAAGGAGCGAGTTAAGGGAGCAACAGCTGCT
GGAGAGAATGTGAGTGGAAACGGTGCTTTTTCTCCGCTTCCCATGAAAAG
ATCAAGTTTTTCATTTTTTTCAGCGCTTAGGCGAGGGGGAGGAGGGAAAG
GAGAAGGAAAGCGAGGAGAAGGAGAAGGAAGAGGGAGCGTGGAGGGAGAG
CAGGAAACGCAGCAGCAAGAACAAGGGCCGATGATTGCCAGCTAACTGAC
GCGTGATCAAGAGGAAGGTGGAGGGTGGAAAGGAGAGAGGGAGGCGGAAA
GCTACACATACGCTCATACATAGAAACGAGGCATAGATATTGATGGACAC
ATAGAGGAGATAGCTTTCCAAAGGAACAGAAAAAGGGTGAGGAGAAGGTG
ATGGTAGTCGAAAAAGAGGGGCAAAAGGAGCAAAAAAAGGAGAGGGAAAA
ACGATAATGGACAGAGAGATGTACGGCCGGAAGAAACGGAGGAAAAGGGA
CAAGAAGCCGCGCCGCACGACGATATTTCGTATTCTGATTTTGACAGGAG
AAGGACGAAGGAGGAAAGAGGAACAAAACACGCCACTCATTTTAGCCACT
GTATTTTTTT back to topCoding sequence (CDS) from alignment at scaffold_13:40451..43310- >mRNA_5274 ID=mRNA_5274|Name=jgi.p|Nanoce1779_2|62434|organism=Nannochloropsis oceanica|type=CDS|length=4113bp|location=Sequence derived from alignment at scaffold_13:40451..43310- (Nannochloropsis oceanica)
CAAGAACAAGGGCCGATGAATCCTTGGCCTCGACAAAGGCGCCAGTGCCG
GTCAAATAAGCAAGGCCTACAAATCGCTCGCCAAACGGTATCATCCCGAC
CGCAGCGTCGGCAACGACAAGGATGAAAATACGGAGAAATTCAAGAAGAT
TTGCGAGGCGTACAGCATTCTGTCCGACCAACGACGCCGGCGCCAGTATG
ATGTGTACGGGGGCAACCCATCCGAGATGGAAGATTCTGCCTATGAAATG
GAGGGCCAAAACAGCATCACGAGAGTTTTCGGTGCAGTGTGGTCAGCCTT
TGGCGCAGTACTTCACACAGAAATCGGTGCTAGCACCCTGATTCAGGCGC
AGGAGTTATGTGCGAGGAGTGCGGCGGCAGCGGCAGCCGCAGCCGCAGCC
GCAGTATCAGGAGGAGAGGAAGGAAAGCCGTCGACGACCAAAATAAATGA
GGCTAATAAGGAGGGAAAGAAGGTGACGGAGCTAAAACTGGGTCATGGAA
TAACGGGGTCGACGGGACGGCAAGATAGTGTATATTATGTTTTGAGACTG
TCGGAAGCGGAAGCGGCGAACGGGGTGATTGTGAGTTGTAATTCTTCCAA
CAAAAGCCGCTTTAAGCTTATCTGTTTCGACCACGAGGGGGCCGTGCGAT
ATGTGCAGGAGAGCTCATTGACGAGCGATAAGAAATTCACGGTGGCCAAC
ATGTTCTTGGTCCCGTTCGAGACGATCATCTCCGTGGCGCCTCCCCCGGT
GGGTGGTGGGTTGTTAGACCACCCGCAGATCTTCGAAAGAGTGCGCAACA
TGACGGCCGAGGCCAGGACGCTGCGTGCAGGAGAGCATTTGCTCTGTGTG
TATGGGGATAACTGGTTGAATAACACCCCTTACACACTGACGGCGTTGCT
TGCTGAATTGTCCTCGGGAGTAGTCCAGGCGGTAAAAGACGTGGACGCGG
AGCTGAGGGAGAAGAAGAAGGAGGTGGAGGAGTTGGAAGACGAGTACATC
CGAGCCAAAATGGTGTTTGACCGGGTCTCGGACCGAGTCGCAGAGCAGAC
GGCGGTGACGGAGGGACTGATCAACAAGAGGGAAGTTGCCTTCAACATAT
TTATCGAAGAAAGCCTTAGGAAGTACTCCAATAAGCACGTGGGGCTCGGT
GGACGGCTGCCCACTGCTGCTGCTGTGCCTGCTGCTGCTATGCCAGTGGC
CAATATGGCTTTGGACACGCCACAAGGGGTTGAGGTGGCAGGAGGAAAAG
CCGAGCACCAGCGCGCTGGGTCGTTGACATCGTCCAATTCGGATGGGGCC
ACAGTGGGTGCATGAACAACAGCGGGATGCGACGTAAGGAAGTCTACAAC
CGGACGGTGGATCTGTATGCTCAAGAACAAGGGCCGATGAATCCTTGGCC
TCGACAAAGGCGCCAGTGCCGGTCAAATAAGCAAGGCCTACAAATCGCTC
GCCAAACGGTATCATCCCGACCGCAGCGTCGGCAACGACAAGGATGAAAA
TACGGAGAAATTCAAGAAGATTTGCGAGGCGTACAGCATTCTGTCCGACC
AACGACGCCGGCGCCAGTATGATGTGTACGGGGGCAACCCATCCGAGATG
GAAGATTCTGCCTATGAAATGGAGGGCCAAAACAGCATCACGAGAGTTTT
CGGTGCAGTGTGGTCAGCCTTTGGCGCAGTACTTCACACAGAAATCGGTG
CTAGCACCCTGATTCAGGCGCAGGAGTTATGTGCGAGGAGTGCGGCGGCA
GCGGCAGCCGCAGCCGCAGCCGCAGTATCAGGAGGAGAGGAAGGAAAGCC
GTCGACGACCAAAATAAATGAGGCTAATAAGGAGGGAAAGAAGGTGACGG
AGCTAAAACTGGGTCATGGAATAACGGGGTCGACGGGACGGCAAGATAGT
GTATATTATGTTTTGAGACTGTCGGAAGCGGAAGCGGCGAACGGGGTGAT
TGTGAGTTGTAATTCTTCCAACAAAAGCCGCTTTAAGCTTATCTGTTTCG
ACCACGAGGGGGCCGTGCGATATGTGCAGGAGAGCTCATTGACGAGCGAT
AAGAAATTCACGGTGGCCAACATGTTCTTGGTCCCGTTCGAGACGATCAT
CTCCGTGGCGCCTCCCCCGGTGGGTGGTGGGTTGTTAGACCACCCGCAGA
TCTTCGAAAGAGTGCGCAACATGACGGCCGAGGCCAGGACGCTGCGTGCA
GGAGAGCATTTGCTCTGTGTGTATGGGGATAACTGGTTGAATAACACCCC
TTACACACTGACGGCGTTGCTTGCTGAATTGTCCTCGGGAGTAGTCCAGG
CGGTAAAAGACGTGGACGCGGAGCTGAGGGAGAAGAAGAAGGAGGTGGAG
GAGTTGGAAGACGAGTACATCCGAGCCAAAATGGTGTTTGACCGGGTCTC
GGACCGAGTCGCAGAGCAGACGGCGGTGACGGAGGGACTGATCAACAAGA
GGGAAGTTGCCTTCAACATATTTATCGAAGAAAGCCTTAGGAAGTACTCC
AATAAGCACGTGGGGCTCGGTGGACGGCTGCCCACTGCTGCTGCTGTGCC
TGCTGCTGCTATGCCAGTGGCCAATATGGCTTTGGACACGCCACAAGGGG
TTGAGGTGGCAGGAGGAAAAGCCGAGCACCAGCGCGCTGGGTCGTTGACA
TCGTCCAATTCGGATGGGGCCACAGTGGGTGCATGAACAACAGCGGGATG
CGACGTAAGGAAGTCTACAACCGGACGGTGGATCTGTATGCTCAAGAACA
AGGGCCGATGAATCCTTGGCCTCGACAAAGGCGCCAGTGCCGGTCAAATA
AGCAAGGCCTACAAATCGCTCGCCAAACGGTATCATCCCGACCGCAGCGT
CGGCAACGACAAGGATGAAAATACGGAGAAATTCAAGAAGATTTGCGAGG
CGTACAGCATTCTGTCCGACCAACGACGCCGGCGCCAGTATGATGTGTAC
GGGGGCAACCCATCCGAGATGGAAGATTCTGCCTATGAAATGGAGGGCCA
AAACAGCATCACGAGAGTTTTCGGTGCAGTGTGGTCAGCCTTTGGCGCAG
TACTTCACACAGAAATCGGTGCTAGCACCCTGATTCAGGCGCAGGAGTTA
TGTGCGAGGAGTGCGGCGGCAGCGGCAGCCGCAGCCGCAGCCGCAGTATC
AGGAGGAGAGGAAGGAAAGCCGTCGACGACCAAAATAAATGAGGCTAATA
AGGAGGGAAAGAAGGTGACGGAGCTAAAACTGGGTCATGGAATAACGGGG
TCGACGGGACGGCAAGATAGTGTATATTATGTTTTGAGACTGTCGGAAGC
GGAAGCGGCGAACGGGGTGATTGTGAGTTGTAATTCTTCCAACAAAAGCC
GCTTTAAGCTTATCTGTTTCGACCACGAGGGGGCCGTGCGATATGTGCAG
GAGAGCTCATTGACGAGCGATAAGAAATTCACGGTGGCCAACATGTTCTT
GGTCCCGTTCGAGACGATCATCTCCGTGGCGCCTCCCCCGGTGGGTGGTG
GGTTGTTAGACCACCCGCAGATCTTCGAAAGAGTGCGCAACATGACGGCC
GAGGCCAGGACGCTGCGTGCAGGAGAGCATTTGCTCTGTGTGTATGGGGA
TAACTGGTTGAATAACACCCCTTACACACTGACGGCGTTGCTTGCTGAAT
TGTCCTCGGGAGTAGTCCAGGCGGTAAAAGACGTGGACGCGGAGCTGAGG
GAGAAGAAGAAGGAGGTGGAGGAGTTGGAAGACGAGTACATCCGAGCCAA
AATGGTGTTTGACCGGGTCTCGGACCGAGTCGCAGAGCAGACGGCGGTGA
CGGAGGGACTGATCAACAAGAGGGAAGTTGCCTTCAACATATTTATCGAA
GAAAGCCTTAGGAAGTACTCCAATAAGCACGTGGGGCTCGGTGGACGGCT
GCCCACTGCTGCTGCTGTGCCTGCTGCTGCTATGCCAGTGGCCAATATGG
CTTTGGACACGCCACAAGGGGTTGAGGTGGCAGGAGGAAAAGCCGAGCAC
CAGCGCGCTGGGTCGTTGACATCGTCCAATTCGGATGGGGCCACAGTGGG
TGCATGAACAACAGCGGGATGCGACGTAAGGAAGTCTACAACCGGACGGT
GGATCTGTATGCT back to top
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