jgi.p|Nanoce1779_2|591976, mRNA_5273 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591976
Unique NamemRNA_5273
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1521
Alignment locationscaffold_13:38421..40117 -

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Properties
Property NameValue
TranscriptId592062
TrackFilteredModels2
ProteinId591976
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:38421..40117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591976gene_5273Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591976mRNA_5273-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5273CDS_5273Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5273 ID=mRNA_5273|Name=jgi.p|Nanoce1779_2|591976|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
CAGGTCATCCTCGGCGTGCTCTCCATGGATCAGTCGAACAAGATGAAGAA
GCCCTCATTATCGTCATGGTGTCTGGTTGCCGCCGTGATCGCCCTGGCCG
GCTGCTTGAGGAAAAGCCAGGCATTTAACATTTTATCACTGTCACCATCA
GCATTATCGTCAAGACTTCCACGAGCACCAGCGACGGAATTCAGTCCGTG
TTTTCGCACGTCCACAGCTTTGCATGGCAGCTCCCTCCCTCCCGACATCC
CTTCTCCTACAGGCGAGAACAGCAGGCGGCGGCAGTCCCGTTTCAATAAG
ACTCCCAAGCAACCAGAGGAGCCCAAGAAGGAGGCGCGATTTTCGAAAGA
CTCGCATTTTTACACGGGTGCTATTGGAATAGGCACGTACTCGTGGGGGG
ATCGGCGGGATGGCTTCTTCTATGGTGATTATCCATCCAACGCTATGGAA
CGTTCGCAAATGAGCTGCGGCGCCTTCAACGAACAAGACATCGAAGAGGC
CTTCACCTTTCTAGAGGAAGCCGGCTTGCCTATGTTTGATGCTCGGGAGC
TGTACCCTTGCGAAGATTTTTTGGGCGAGATGGTGAATCATTGGAAGAAA
CGTCAATTGAAACTACAGAGTGATGTGAAGCAGGTGCGTCCTTTTATTGC
GACCAATTACCAGGCAAGATTGTTCGGCAAGGGTCTGTTGGATGTCAGGG
GGGGGAGGAGGGCGGTTTTGAAGGCGCTAGAAGGTAGTTTAGAAGCATTG
CAGGCGACAAGGGTTGATTTATATCAGATCACGAAACCCGGTCCGTTGTA
CTGGGGAGGTGAAAAGGCCATTTTTGAGGCCGTGGCCCAAGCGAAACGCA
TGCGTTTGCTTGATAATGTCGGGGTGGTGGGGTACGTGAACGAAGACGAC
TTACGACGCGTTAAGACTACTGCGAAATCCTTTGGGATAGACATCAAAAG
CAATTCGTTCGAACTTTCGCTGGCGAACCCGGCGGCGGCCTTGGTGGACG
GAACCGTTGCGGCGTGCAAGAACATGAATATTGTGCCCTTTGCAAATCGG
CCATTGGCGGGGGGGCTGGCGGCGGGGACTTACACGATGATGGACCCTAG
CGGGGGCAGAAGCCGGAAACCTAGGTACACCTTTCCGGACTTGGAGCCGC
TCTACCCCATCCATAAGGCCTTGAGGGAACATGCAGGGAAGTACACGGAG
AAACTCGGTAAACGCGTAAATACTGCCCAAGTGTCCATTAATTGGGTGCG
AGCCCAGGGGGTGATTCCGCTCGTAGGGGTCAAAACTGCGGCGCAAGCCA
AGGACATGGTGGAAGCCGCGAAATGGGATTTGGAGCCTGAGGATGTGAAG
GAGTTAAGTCAGGTGGCGTTAGATACGTACAAGAAACGGAGGAAGATCAC
TGAGATGCTGGCCAAGGCGCGTCGATAGGAAGGAGAAGATATGAAATGTG
TGACCACGGAAAAATCATAGGGAAAAGAAAAAAATAAAAGAAAGAAAGAA
AGAAATACTATATCTCGATCA
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protein sequence of jgi.p|Nanoce1779_2|591976

>mRNA_5273-protein ID=mRNA_5273-protein|Name=jgi.p|Nanoce1779_2|591976|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MDQSNKMKKPSLSSWCLVAAVIALAGCLRKSQAFNILSLSPSALSSRLPR
APATEFSPCFRTSTALHGSSLPPDIPSPTGENSRRRQSRFNKTPKQPEEP
KKEARFSKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGA
FNEQDIEEAFTFLEEAGLPMFDARELYPCEDFLGEMVNHWKKRQLKLQSD
VKQVRPFIATNYQARLFGKGLLDVRGGRRAVLKALEGSLEALQATRVDLY
QITKPGPLYWGGEKAIFEAVAQAKRMRLLDNVGVVGYVNEDDLRRVKTTA
KSFGIDIKSNSFELSLANPAAALVDGTVAACKNMNIVPFANRPLAGGLAA
GTYTMMDPSGGRSRKPRYTFPDLEPLYPIHKALREHAGKYTEKLGKRVNT
AQVSINWVRAQGVIPLVGVKTAAQAKDMVEAAKWDLEPEDVKELSQVALD
TYKKRRKITEMLAKARR*
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mRNA from alignment at scaffold_13:38421..40117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5273 ID=mRNA_5273|Name=jgi.p|Nanoce1779_2|591976|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp|location=Sequence derived from alignment at scaffold_13:38421..40117- (Nannochloropsis oceanica)
CAGGTCATCCTCGGCGTGCTCTCCATGGATCAGTCGAACAAGATGAAGAA
GCCCTCATTATCGTCATGGTGTCTGGTTGCCGCCGTGATCGCCCTGGCCG
GCTGCTTGAGGAAAAGCCAGGCATTTAACATTTTATCACTGTCACCATCA
GCATTATCGTCAAGACTTCCACGAGCACCAGCGACGGAATTCAGTCCGTG
TTTTCGCACGTCCACAGCTTTGCATGGCAGCTCCCTCCCTCCCGACATCC
CTTCTCCTACAGGCGAGAACAGCAGGCGGCGGCAGTCCCGTTTCAATAAG
ACTCCCAAGCAACCAGAGGAGCCCAAGAAGGAGGCGCGATTTTCGAAAGA
CTCGCATTTTTACACGGGTGCTATTGGAATAGGCACGTACTCGTGGGGGG
ATCGGCGGGATGGCTTCTTCTATGGTGATGTAAGTTCGACGGCAGAGAAG
GAAGTGGAAGGGAAATGTAAGCGGTGCGGTAAAGAGATCAAAGCAAGGAT
AGGAAAAGGTATAAAGAGAAGGGTTATCTTGTTTCGTATAAAGCCACGTG
CGAATCGACCCCTCCCTTTCTCCCTCTTTTCCTCCTTTTTATTCTTCTTC
TCCAGTATCCATCCAACGCTATGGAACGTTCGCAAATGAGCTGCGGCGCC
TTCAACGAACAAGACATCGAAGAGGCCTTCACCTTTCTAGAGGAAGCCGG
CTTGCCTATGTTTGATGCTCGGGAGCTGTACCCTTGCGAAGATTTTTTGG
GCGAGATGGTGAATCATTGGAAGAAACGTCAATTGAAACTACAGAGTGAT
GTGAAGCAGGTGCGTCCTTTTATTGCGACCAATTACCAGGCAAGATTGTT
CGGCAAGGGTCTGTTGGATGTCAGGGGGGGGAGGAGGGCGGTTTTGAAGG
CGCTAGAAGGTAGTTTAGAAGCATTGCAGGCGACAAGGGTTGATTTATAT
CAGATCACGAAACCCGGTCCGTTGTACTGGGGAGGTGAAAAGGCCATTTT
TGAGGCCGTGGCCCAAGCGAAACGCATGCGTTTGCTTGATAATGTCGGGG
TGGTGGGGTACGTGAACGAAGACGACTTACGACGCGTTAAGACTACTGCG
AAATCCTTTGGGATAGACATCAAAAGCAATTCGTTCGAACTTTCGCTGGC
GAACCCGGCGGCGGCCTTGGTGGACGGAACCGTTGCGGCGTGCAAGAACA
TGAATATTGTGCCCTTTGCAAATCGGCCATTGGCGGGGGGGCTGGCGGCG
GGGACTTACACGATGATGGACCCTAGCGGGGGCAGAAGCCGGAAACCTAG
GTACACCTTTCCGGACTTGGAGCCGCTCTACCCCATCCATAAGGCCTTGA
GGGAACATGCAGGGAAGTACACGGAGAAACTCGGTAAACGCGTAAATACT
GCCCAAGTGTCCATTAATTGGGTGCGAGCCCAGGGGGTGATTCCGCTCGT
AGGGGTCAAAACTGCGGCGCAAGCCAAGGACATGGTGGAAGCCGCGAAAT
GGGATTTGGAGCCTGAGGATGTGAAGGAGTTAAGTCAGGTGGCGTTAGAT
ACGTACAAGAAACGGAGGAAGATCACTGAGATGCTGGCCAAGGCGCGTCG
ATAGGAAGGAGAAGATATGAAATGTGTGACCACGGAAAAATCATAGGGAA
AAGAAAAAAATAAAAGAAAGAAAGAAAGAAATACTATATCTCGATCA
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Coding sequence (CDS) from alignment at scaffold_13:38421..40117-

>mRNA_5273 ID=mRNA_5273|Name=jgi.p|Nanoce1779_2|591976|organism=Nannochloropsis oceanica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_13:38421..40117- (Nannochloropsis oceanica)
TATCCATCCAACGCTATGGAACGTTCGCAAATGAGCTGCGGCGCCTTCAA
CGAACAAGACATCGAAGAGGCCTTCACCTTTCTAGAGGAAGCCGGCTTGC
CTATGTTTGATGCTCGGGAGCTGTACCCTTGCGAAGATTTTTTGGGCGAG
ATGGTGAATCATTGGAAGAAACGTCAATTGAAACTACAGAGTGATGTGAA
GCAGGTGCGTCCTTTTATTGCGACCAATTACCAGGCAAGATTGTTCGGCA
AGGGTCTGTTGGATGTCAGGGGGGGGAGGAGGGCGGTTTTGAAGGCGCTA
GAAGGTAGTTTAGAAGCATTGCAGGCGACAAGGGTTGATTTATATCAGAT
CACGAAACCCGGTCCGTTGTACTGGGGAGGTGAAAAGGCCATTTTTGAGG
CCGTGGCCCAAGCGAAACGCATGCGTTTGCTTGATAATGTCGGGGTGGTG
GGGTACGTGAACGAAGACGACTTACGACGCGTTAAGACTACTGCGAAATC
CTTTGGGATAGACATCAAAAGCAATTCGTTCGAACTTTCGCTGGCGAACC
CGGCGGCGGCCTTGGTGGACGGAACCGTTGCGGCGTGCAAGAACATGAAT
ATTGTGCCCTTTGCAAATCGGCCATTGGCGGGGGGGCTGGCGGCGGGGAC
TTACACGATGATGGACCCTAGCGGGGGCAGAAGCCGGAAACCTAGGTACA
CCTTTCCGGACTTGGAGCCGCTCTACCCCATCCATAAGGCCTTGAGGGAA
CATGCAGGGAAGTACACGGAGAAACTCGGTAAACGCGTAAATACTGCCCA
AGTGTCCATTAATTGGGTGCGAGCCCAGGGGGTGATTCCGCTCGTAGGGG
TCAAAACTGCGGCGCAAGCCAAGGACATGGTGGAAGCCGCGAAATGGGAT
TTGGAGCCTGAGGATGTGAAGGAGTTAAGTCAGGTGGCGTTAGATACGTA
CAAGAAACGGAGGAAGATCACTGAGATGCTGGCCAAGGCGCGTCGATAGA
TGGATCAGTCGAACAAGATGAAGAAGCCCTCATTATCGTCATGGTGTCTG
GTTGCCGCCGTGATCGCCCTGGCCGGCTGCTTGAGGAAAAGCCAGGCATT
TAACATTTTATCACTGTCACCATCAGCATTATCGTCAAGACTTCCACGAG
CACCAGCGACGGAATTCAGTCCGTGTTTTCGCACGTCCACAGCTTTGCAT
GGCAGCTCCCTCCCTCCCGACATCCCTTCTCCTACAGGCGAGAACAGCAG
GCGGCGGCAGTCCCGTTTCAATAAGACTCCCAAGCAACCAGAGGAGCCCA
AGAAGGAGGCGCGATTTTCGAAAGACTCGCATTTTTACACGGGTGCTATT
GGAATAGGCACGTACTCGTGGGGGGATCGGCGGGATGGCTTCTTCTATGG
TGATTATCCATCCAACGCTATGGAACGTTCGCAAATGAGCTGCGGCGCCT
TCAACGAACAAGACATCGAAGAGGCCTTCACCTTTCTAGAGGAAGCCGGC
TTGCCTATGTTTGATGCTCGGGAGCTGTACCCTTGCGAAGATTTTTTGGG
CGAGATGGTGAATCATTGGAAGAAACGTCAATTGAAACTACAGAGTGATG
TGAAGCAGGTGCGTCCTTTTATTGCGACCAATTACCAGGCAAGATTGTTC
GGCAAGGGTCTGTTGGATGTCAGGGGGGGGAGGAGGGCGGTTTTGAAGGC
GCTAGAAGGTAGTTTAGAAGCATTGCAGGCGACAAGGGTTGATTTATATC
AGATCACGAAACCCGGTCCGTTGTACTGGGGAGGTGAAAAGGCCATTTTT
GAGGCCGTGGCCCAAGCGAAACGCATGCGTTTGCTTGATAATGTCGGGGT
GGTGGGGTACGTGAACGAAGACGACTTACGACGCGTTAAGACTACTGCGA
AATCCTTTGGGATAGACATCAAAAGCAATTCGTTCGAACTTTCGCTGGCG
AACCCGGCGGCGGCCTTGGTGGACGGAACCGTTGCGGCGTGCAAGAACAT
GAATATTGTGCCCTTTGCAAATCGGCCATTGGCGGGGGGGCTGGCGGCGG
GGACTTACACGATGATGGACCCTAGCGGGGGCAGAAGCCGGAAACCTAGG
TACACCTTTCCGGACTTGGAGCCGCTCTACCCCATCCATAAGGCCTTGAG
GGAACATGCAGGGAAGTACACGGAGAAACTCGGTAAACGCGTAAATACTG
CCCAAGTGTCCATTAATTGGGTGCGAGCCCAGGGGGTGATTCCGCTCGTA
GGGGTCAAAACTGCGGCGCAAGCCAAGGACATGGTGGAAGCCGCGAAATG
GGATTTGGAGCCTGAGGATGTGAAGGAGTTAAGTCAGGTGGCGTTAGATA
CGTACAAGAAACGGAGGAAGATCACTGAGATGCTGGCCAAGGCGCGTCGA
TAGATGGATCAGTCGAACAAGATGAAGAAGCCCTCATTATCGTCATGGTG
TCTGGTTGCCGCCGTGATCGCCCTGGCCGGCTGCTTGAGGAAAAGCCAGG
CATTTAACATTTTATCACTGTCACCATCAGCATTATCGTCAAGACTTCCA
CGAGCACCAGCGACGGAATTCAGTCCGTGTTTTCGCACGTCCACAGCTTT
GCATGGCAGCTCCCTCCCTCCCGACATCCCTTCTCCTACAGGCGAGAACA
GCAGGCGGCGGCAGTCCCGTTTCAATAAGACTCCCAAGCAACCAGAGGAG
CCCAAGAAGGAGGCGCGATTTTCGAAAGACTCGCATTTTTACACGGGTGC
TATTGGAATAGGCACGTACTCGTGGGGGGATCGGCGGGATGGCTTCTTCT
ATGGTGAT
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Synonyms
Publications