jgi.p|Nanoce1779_2|625667, mRNA_5272 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625667
Unique Name	mRNA_5272
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1668
Alignment location	scaffold_13:36613..38412 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625753
Track	FilteredModels2
ProteinId	625667

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:36613..38412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625667	gene_5272	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625667	mRNA_5272-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5272	CDS_5272	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:36613..38412+
coding sequence from alignment at scaffold_13:36613..38412+

mRNA sequence

>mRNA_5272 ID=mRNA_5272|Name=jgi.p|Nanoce1779_2|625667|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
GCTGGGGAGGCGAGGTTGCGCCTGGGAATCTGGGCAATCGGAAGGCTTGA
GCAGAAAAGGGGAGGACAGCCAGCAGGGCTGCCGATGCCATGAGGTGCTT
CATCGACTCGTCGTCTTAATTATCCTAATGTTGTGTGGTGCGTGGGTCGA
ATTTGGATCGCATTGTCGTGCAAAGCAGCTTGGGTGCTGAGTGCAAAGCC
TGGGCAGGAGGTACTACGCAGTCACTCGGTGGTAGACTCCGAGTCGCCGC
TCGCCGCTTCTACCAGTTGCTGCGTTGGATGCTGCGACATCTTTAAAGCC
AGGACGCGGACCATCACCACACAGCTATAGTCTTATCGTTCATTCTGACA
CCGTTGTATTCCCGTAACACACACAGGATCCTAGACCTTTGCCGCTGCAT
CCACGTCTTGGCCGTGAAACCTCCCCACCACCTCTCCTTCTCAACTCAAG
CGAACATGCCACGTCCCACCACCATGGGGACTACAGGGACCCTCGCCCTC
CTCCTCCTCCTCCTCTGTACGCCCTGCTCTATCCTGGCCTTCATGGTCCA
GCAACCATTGCGACGGCACTCGCTGCAAGCCCGTCCTCCACCATTACAAC
CAGCTGCATCAGACATCGACTTCAGCGTTGGGCTCTGGCCGAAGGAAAGC
AGGCTACTCCTGGCCCTGCTCGGGGGCTTGGGGTTTCTCGAAACAGCTTA
CCTCACCTATCAAAAGCTCACCACGGACGATCTAACTTCTCTTTGTACGG
CGGTGGCAGGCCTAAGTATGAAATGTGGCGATGTACTCAACTCAGAATTT
GCGAGTTTTTTGGACGTGCCCTTGACACTGCCAGGGGCGGTTGCTTATGC
CTCCGCTACTGCACTAGCCCTGTGGCCGTTAATGGCCGGAGGGGAGAATA
CTCGGGAGAGAGCAGAGGCAGACAGTAGTAGTAGAGCGCCGTTGTTGATA
CTTACAACGGCGATGGCGACGTTTAGCGGGTATTTTATGTGGGTCTTGGC
GACGCAAATCAAGGAGCTTTGCCCTTATTGCCTGGCGAGTGCTAGTTTAT
CGTTTAGCATGGTGGGGTTAACGTGGAGCAAAAATATCGAGCCAAATGCA
ACAAAAAGTGTAATTTACAAGGGGGGGGCTGTCGCTGTGACAGGGTTGTT
TTCCGTGGCGGCCTTCGCGTATGCTAGTGCCAAGATTTTGGTCATGACGC
AAGGGGGGATGGAGGGAGGGAGGGGAGGAGGGATGTCTCCACCAGCGATT
ACGACACATTCGACGGCAAGGAGCGAGGCCTTGGCAGTTCGATTGGCAGG
GATGGACGCGAAGATGTACGGGGCATTCTGGTGCTCCCATTGTTATGAGC
AGAAACAGGCGTTCGGCCAGGAGAGTTTCTACAGGCACATTAAGTATATC
GAATGTGCGCCTGATGGAGCCAAGAGTGAGACGAAGGTGTGCAAGACGAG
GAAGGTTCCTGGCTATCCGACGTGGGAAATCAAGGGGGACTTGTACCCAG
GGGAAAAGAGTTTAGAGCAGCTGGAGGATATCGTGGAGGGACGCGTGGCA
GTGCCTCCTTTGGTGTTACCGAAATGAGAGACAGCGGGAGTGAGGGAAGG
GGGAAATGTGTAGTTGTAAGAAGAGAGGTCTTGTGCAAGAATCAAAAGCG
AGTAAGATAGGTTGGGGA

protein sequence of jgi.p|Nanoce1779_2|625667

>mRNA_5272-protein ID=mRNA_5272-protein|Name=jgi.p|Nanoce1779_2|625667|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MPRPTTMGTTGTLALLLLLLCTPCSILAFMVQQPLRRHSLQARPPPLQPA
ASDIDFSVGLWPKESRLLLALLGGLGFLETAYLTYQKLTTDDLTSLCTAV
AGLSMKCGDVLNSEFASFLDVPLTLPGAVAYASATALALWPLMAGGENTR
ERAEADSSSRAPLLILTTAMATFSGYFMWVLATQIKELCPYCLASASLSF
SMVGLTWSKNIEPNATKSVIYKGGAVAVTGLFSVAAFAYASAKILVMTQG
GMEGGRGGGMSPPAITTHSTARSEALAVRLAGMDAKMYGAFWCSHCYEQK
QAFGQESFYRHIKYIECAPDGAKSETKVCKTRKVPGYPTWEIKGDLYPGE
KSLEQLEDIVEGRVAVPPLVLPK*

mRNA from alignment at scaffold_13:36613..38412+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5272 ID=mRNA_5272|Name=jgi.p|Nanoce1779_2|625667|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at scaffold_13:36613..38412+ (Nannochloropsis oceanica)
GCTGGGGAGGCGAGGTTGCGCCTGGGAATCTGGGCAATCGGAAGGCTTGA
GCAGAAAAGGGGAGGACAGCCAGCAGGGCTGCCGATGCCATGAGGTGCTT
CATCGACTCGTCGTCTTAATTATCCTAATGTTGTGTGGTGCGTGGGTCGA
ATTTGGATCGCATTGTCGTGCAAAGCAGCTTGGGTGCTGAGTGCAAAGCC
TGGGCAGGAGGTACTACGCAGTCACTCGGTGGTAGACTCCGAGTCGCCGC
TCGCCGCTTCTACCAGTTGCTGCGTTGGATGCTGCGACATCTTTAAAGCC
AGGACGCGGACCATCACCACACAGCTATAGTCTTATCGTTCATTCTGACA
CCGTTGTATTCCCGTAACACACACAGGATCCTAGACCTTTGCCGCTGCAT
CCACGTCTTGGCCGTGAAACCTCCCCACCACCTCTCCTTCTCAACTCAAG
CGAACATGCCACGTCCCACCACCATGGGGACTACAGGGACCCTCGCCCTC
CTCCTCCTCCTCCTCTGTACGCCCTGCTCTATCCTGGCCTTCATGGTCCA
GCAACCATTGCGACGGCACTCGCTGCAAGCCCGTCCTCCACCATTACAAC
CAGCTGCATCGTCCTCCTCCCACCGCACTACTGCCCGCCCGCTCCGGCTC
CTCCAACGTTGCGCCACTCCCCCTACCGAAGACAACACCATTACCACTAT
CACAGATTCTACGGATTCATCACAAGCACCATTACCTTCCAGAGACATCG
ACTTCAGCGTTGGGCTCTGGCCGAAGGAAAGCAGGCTACTCCTGGCCCTG
CTCGGGGGCTTGGGGTTTCTCGAAACAGCTTACCTCACCTATCAAAAGCT
CACCACGGACGATCTAACTTCTCTTTGTACGGCGGTGGCAGGCCTAAGTA
TGAAATGTGGCGATGTACTCAACTCAGAATTTGCGAGTTTTTTGGACGTG
CCCTTGACACTGCCAGGGGCGGTTGCTTATGCCTCCGCTACTGCACTAGC
CCTGTGGCCGTTAATGGCCGGAGGGGAGAATACTCGGGAGAGAGCAGAGG
CAGACAGTAGTAGTAGAGCGCCGTTGTTGATACTTACAACGGCGATGGCG
ACGTTTAGCGGGTATTTTATGTGGGTCTTGGCGACGCAAATCAAGGAGCT
TTGCCCTTATTGCCTGGCGAGTGCTAGTTTATCGTTTAGCATGGTGGGGT
TAACGTGGAGCAAAAATATCGAGCCAAATGCAACAAAAAGTGTAATTTAC
AAGGGGGGGGCTGTCGCTGTGACAGGGTTGTTTTCCGTGGCGGCCTTCGC
GTATGCTAGTGCCAAGATTTTGGTCATGACGCAAGGGGGGATGGAGGGAG
GGAGGGGAGGAGGGATGTCTCCACCAGCGATTACGACACATTCGACGGCA
AGGAGCGAGGCCTTGGCAGTTCGATTGGCAGGGATGGACGCGAAGATGTA
CGGGGCATTCTGGTGCTCCCATTGTTATGAGCAGAAACAGGCGTTCGGCC
AGGAGAGTTTCTACAGGCACATTAAGTATATCGAATGTGCGCCTGATGGA
GCCAAGAGTGAGACGAAGGTGTGCAAGACGAGGAAGGTTCCTGGCTATCC
GACGTGGGAAATCAAGGGGGACTTGTACCCAGGGGAAAAGAGTTTAGAGC
AGCTGGAGGATATCGTGGAGGGACGCGTGGCAGTGCCTCCTTTGGTGTTA
CCGAAATGAGAGACAGCGGGAGTGAGGGAAGGGGGAAATGTGTAGTTGTA
AGAAGAGAGGTCTTGTGCAAGAATCAAAAGCGAGTAAGATAGGTTGGGGA

Coding sequence (CDS) from alignment at scaffold_13:36613..38412+

>mRNA_5272 ID=mRNA_5272|Name=jgi.p|Nanoce1779_2|625667|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_13:36613..38412+ (Nannochloropsis oceanica)
ATGCCACGTCCCACCACCATGGGGACTACAGGGACCCTCGCCCTCCTCCT
CCTCCTCCTCTGTACGCCCTGCTCTATCCTGGCCTTCATGGTCCAGCAAC
CATTGCGACGGCACTCGCTGCAAGCCCGTCCTCCACCATTACAACCAGCT
GCATCAGACATCGACTTCAGCGTTGGGCTCTGGCCGAAGGAAAGCAGGCT
ACTCCTGGCCCTGCTCGGGGGCTTGGGGTTTCTCGAAACAGCTTACCTCA
CCTATCAAAAGCTCACCACGGACGATCTAACTTCTCTTTGTACGGCGGTG
GCAGGCCTAAGTATGAAATGTGGCGATGTACTCAACTCAGAATTTGCGAG
TTTTTTGGACGTGCCCTTGACACTGCCAGGGGCGGTTGCTTATGCCTCCG
CTACTGCACTAGCCCTGTGGCCGTTAATGGCCGGAGGGGAGAATACTCGG
GAGAGAGCAGAGGCAGACAGTAGTAGTAGAGCGCCGTTGTTGATACTTAC
AACGGCGATGGCGACGTTTAGCGGGTATTTTATGTGGGTCTTGGCGACGC
AAATCAAGGAGCTTTGCCCTTATTGCCTGGCGAGTGCTAGTTTATCGTTT
AGCATGGTGGGGTTAACGTGGAGCAAAAATATCGAGCCAAATGCAACAAA
AAGTGTAATTTACAAGGGGGGGGCTGTCGCTGTGACAGGGTTGTTTTCCG
TGGCGGCCTTCGCGTATGCTAGTGCCAAGATTTTGGTCATGACGCAAGGG
GGGATGGAGGGAGGGAGGGGAGGAGGGATGTCTCCACCAGCGATTACGAC
ACATTCGACGGCAAGGAGCGAGGCCTTGGCAGTTCGATTGGCAGGGATGG
ACGCGAAGATGTACGGGGCATTCTGGTGCTCCCATTGTTATGAGCAGAAA
CAGGCGTTCGGCCAGGAGAGTTTCTACAGGCACATTAAGTATATCGAATG
TGCGCCTGATGGAGCCAAGAGTGAGACGAAGGTGTGCAAGACGAGGAAGG
TTCCTGGCTATCCGACGTGGGAAATCAAGGGGGACTTGTACCCAGGGGAA
AAGAGTTTAGAGCAGCTGGAGGATATCGTGGAGGGACGCGTGGCAGTGCC
TCCTTTGGTGTTACCGAAATGAATGCCACGTCCCACCACCATGGGGACTA
CAGGGACCCTCGCCCTCCTCCTCCTCCTCCTCTGTACGCCCTGCTCTATC
CTGGCCTTCATGGTCCAGCAACCATTGCGACGGCACTCGCTGCAAGCCCG
TCCTCCACCATTACAACCAGCTGCATCAGACATCGACTTCAGCGTTGGGC
TCTGGCCGAAGGAAAGCAGGCTACTCCTGGCCCTGCTCGGGGGCTTGGGG
TTTCTCGAAACAGCTTACCTCACCTATCAAAAGCTCACCACGGACGATCT
AACTTCTCTTTGTACGGCGGTGGCAGGCCTAAGTATGAAATGTGGCGATG
TACTCAACTCAGAATTTGCGAGTTTTTTGGACGTGCCCTTGACACTGCCA
GGGGCGGTTGCTTATGCCTCCGCTACTGCACTAGCCCTGTGGCCGTTAAT
GGCCGGAGGGGAGAATACTCGGGAGAGAGCAGAGGCAGACAGTAGTAGTA
GAGCGCCGTTGTTGATACTTACAACGGCGATGGCGACGTTTAGCGGGTAT
TTTATGTGGGTCTTGGCGACGCAAATCAAGGAGCTTTGCCCTTATTGCCT
GGCGAGTGCTAGTTTATCGTTTAGCATGGTGGGGTTAACGTGGAGCAAAA
ATATCGAGCCAAATGCAACAAAAAGTGTAATTTACAAGGGGGGGGCTGTC
GCTGTGACAGGGTTGTTTTCCGTGGCGGCCTTCGCGTATGCTAGTGCCAA
GATTTTGGTCATGACGCAAGGGGGGATGGAGGGAGGGAGGGGAGGAGGGA
TGTCTCCACCAGCGATTACGACACATTCGACGGCAAGGAGCGAGGCCTTG
GCAGTTCGATTGGCAGGGATGGACGCGAAGATGTACGGGGCATTCTGGTG
CTCCCATTGTTATGAGCAGAAACAGGCGTTCGGCCAGGAGAGTTTCTACA
GGCACATTAAGTATATCGAATGTGCGCCTGATGGAGCCAAGAGTGAGACG
AAGGTGTGCAAGACGAGGAAGGTTCCTGGCTATCCGACGTGGGAAATCAA
GGGGGACTTGTACCCAGGGGAAAAGAGTTTAGAGCAGCTGGAGGATATCG
TGGAGGGACGCGTGGCAGTGCCTCCTTTGGTGTTACCGAAATGA

Synonyms

Publications