jgi.p|Nanoce1779_2|591969, mRNA_5270 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591969
Unique NamemRNA_5270
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1407
Alignment locationscaffold_13:34559..36520 -

Link to JBrowse

Properties
Property NameValue
TranscriptId592055
TrackFilteredModels2
ProteinId591969
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:34559..36520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591969gene_5270Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591969mRNA_5270-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5270CDS_5270Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5270 ID=mRNA_5270|Name=jgi.p|Nanoce1779_2|591969|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp
TCACCTGTGCTCAAGGCGGCGGTGGGGTTGCTGACAGATGGTTTGAACAA
CGTGGCACGGCAAGAAGCCTCCCTCTCCACCCCGGAGAAGGTCGTTACCC
GCCTGTCCCCCACAGCTCTCAAGCAAAAAATCGAAGCCGATTACAAGGCC
GCCTATTTCTTGACGGGTGCCATTAGCCCCGAGGCATATGATGAAGATTG
CGTCTTTATGGGTACGTTAGTGAGAGAGAGATGGACTGGCTCGGAAAGGA
AAGGCTGTAGGATGAAGGAAGGGAGGGAGAGCCGATCGCAGTAGGAAAGC
AGAAACGGCACACTTGATTACCAAAGAAGCTCTGCTCGCTTATTGATATG
CACCCATATCTCAGCTTTACACCGACGTACAAATACACATAAACACACAT
GCGTCCCCTTTTCCCTTCAAGACCCCACGCTTTCCTTCACGGGCCTGGCG
ACTTGGTCTCGGAACATAAACAACCTCAAGATCTTCTTCCGTGATCCCCG
CCTGGACCTGCAAGGCATCAAGCTGGACACTACCACTCAAACTGTCAAAA
CGCAATGGCGGCTGACCTGCGAGCTCGCCTTGCCATGGCGTCCATTTATT
GACGTTGAAGGGAGTACCCTTCACCGCTATGATCCTCTAAAAGGAGGCAA
AGTTGTCGAACACATAGAGAGTTGGGCCATCTCCGGTCTCGCTGCTGTAC
TCCAACTGTTCAAGCCCGGCAACAGCCGTCCTTCCCCTGCCTCCCTCCCT
TCCCCGCCTCCTTCAAAAATGAAAGGAAACTTCCGTCTGCTTGCCAACAC
CATCTTCCCCCTTTCCCTCTCCCTCCTCCCCTCGTTCTCGTCCTCCTTCC
CTTCCTCGCCCTCCTCTTTCGTGGTTCACGCTGCGGAAGACCGTCGACAG
GTAGCGGATATACCAGCTTCTGGCCTCGTCTTCAAAGACACTATTAATGT
AGAGGCTTTCCAGGATCCTAAGGTAAAAGGGGTGACCCTGTATGTCTCTG
ACTTCAAGCGCCCTATCACTGAGAGACTCGCGAAGGACTTCTTCTCGGAT
CCGAGCCAAGCCTCCGTGGCGTGCGTGCGGACGGGCCTGGTGGTGAAGGG
GGATATCGATACTTCGAAGCAAGGCGAGGAGGTGTTTTCCGAAGCCCGTT
CCCTCCTCTTCAAGACTATTCGTGTTCGTCGTGTGTACGATAAAGATGCC
CAGGCATTAATTTACGTTTCGTATTCGACGCGATTTAACAATAAAGATGA
TGATAACAAAAGTCGGTTTAAATCGTCCATATGTGCAATTCCGCTGGACC
AGGAGGCGACACAGACAAATTAGAGAGAGGAAAGGAGGGAGGGAGGGAGA
AAGAGAGAGGTACAAAAATAGCTTAAAAAAGGCATTACATAGATTAAGAC
ACGCAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|591969

>mRNA_5270-protein ID=mRNA_5270-protein|Name=jgi.p|Nanoce1779_2|591969|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MKGNFRLLANTIFPLSLSLLPSFSSSFPSSPSSFVVHAAEDRRQVADIPA
SGLVFKDTINVEAFQDPKVKGVTLYVSDFKRPITERLAKDFFSDPSQASV
ACVRTGLVVKGDIDTSKQGEEVFSEARSLLFKTIRVRRVYDKDAQALIYV
SYSTRFNNKDDDNKSRFKSSICAIPLDQEATQTN*
back to top

mRNA from alignment at scaffold_13:34559..36520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5270 ID=mRNA_5270|Name=jgi.p|Nanoce1779_2|591969|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp|location=Sequence derived from alignment at scaffold_13:34559..36520- (Nannochloropsis oceanica)
TCACCTGTGCTCAAGGCGGCGGTGGGGTTGCTGACAGATGGTTTGAACAA
CGTGGTACGTGTGCCGTGTAAGCGAGGGGATGGGAGGCGTAAAGGAGATG
CATATACCGGACGAAATTTTGCAGCGGTAGCTCTTACTTCGTGTCACTGA
CGCGCACAACGATACGTCTTGACATCAACTCGCACCATCGCATTCAGGCA
CGGCAAGAAGCCTCCCTCTCCACCCCGGAGAAGGTCGTTACCCGCCTGTC
CCCCACAGCTCTCAAGCAAAAAATCGAAGCCGATTACAAGGCCGCCTATT
TCTTGACGGGTGCCATTAGCCCCGAGGCATATGATGAAGATTGCGTCTTT
ATGGGTACGTTAGTGAGAGAGAGATGGACTGGCTCGGAAAGGAAAGGCTG
TAGGATGAAGGAAGGGAGGGAGAGCCGATCGCAGTAGGAAAGCAGAAACG
GCACACTTGATTACCAAAGAAGCTCTGCTCGCTTATTGATATGCACCCAT
ATCTCAGCTTTACACCGACGTACAAATACACATAAACACACATGCGTCCC
CTTTTCCCTTCAAGACCCCACGCTTTCCTTCACGGGCCTGGCGACTTGGT
CTCGGAACATAAACAACCTCAAGATCTTCTTCCGTGATCCCCGCCTGGAC
CTGCAAGGCATCAAGCTGGACACGTACGTATAGACATTAGTTACTGGATT
GATTTTAAAAAAGGGAGTGAAATGGCTGGTGGGAAGGACTCGTCGTCAGC
ATCTATCTGACAGACTCCCTTCCCTCCCTCCTCCTCCCCCCTTACCTCCT
TCGCCAGTACCACTCAAACTGTCAAAACGCAATGGCGGCTGACCTGCGAG
CTCGCCTTGCCATGGCGTCCATTTATTGACGTTGAAGGGAGTACCCTTCA
CCGCTATGATCCTCTAAAAGGAGGCAAAGTTGTCGAACACATAGAGAGTT
GGGCCATCTCCGGTCTCGCTGCTGTACTCCAACTGTTCAAGCCCGGCAAC
AGCCGTCCTTCCCCTGCCTCCCTCCCTTCCCCGCCTCCTTCAAAAATGAA
AGGAAACTTCCGTCTGCTTGCCAACACCATCTTCCCCCTTTCCCTCTCCC
TCCTCCCCTCGTTCTCGTCCTCCTTCCCTTCCTCGCCCTCCTCTTTCGTG
GTTCACGCTGCGGAAGACCGTCGACAGGTAGCGGATATACCAGCTTCTGG
CCTCGTCTTCAAAGACACTATTAATGTAGAGGCTTTCCAGGTCAGTTTCT
GGTTCTTGTTTTCTCTCCTGCTCTTCCTCTCCTCCCCTGCCACCCCTCTT
TCCTCAACCTTGTCCCCACCATTGGCTGGCTCACCCTCTGCCTCTGGCAC
ACACGCACACACAAATTAGGATCCTAAGGTAAAAGGGGTGACCCTGTATG
TCTCTGACTTCAAGCGCCCTATCACTGAGAGACTCGCGAAGGACTTCTTC
TCGGATCCGAGCCAAGCCTCCGTGGCGTGCGTGCGGACGGGCCTGGTGGT
GAAGGGGGATGTGAGTTTGGGGGAGGGCGGGAGGTAGGGAGGGAGTGCAG
AAGTGAGGGAGAATACGGTAGACGTGATTGTACTCGATCGTCAATAATAG
CTTCCTACGAGTGCTAGTTGTTCTACTCATTTTCTCACTGCCTTCTTCCC
TTCCGTCAGATCGATACTTCGAAGCAAGGCGAGGAGGTGTTTTCCGAAGC
CCGTTCCCTCCTCTTCAAGACTATTCGTGTTCGTCGTGTGTACGATAAAG
ATGCCCAGGCATTAATTTACGTTTCGTATTCGACGCGATTTAACAATAAA
GATGATGATAACAAAAGTCGGTTTAAATCGTCCATATGTGCAATTCCGCT
GGACCAGGAGGCGACACAGACAAATTAGAGAGAGGAAAGGAGGGAGGGAG
GGAGAAAGAGAGAGGTACAAAAATAGCTTAAAAAAGGCATTACATAGATT
AAGACACGCAGG
back to top

Coding sequence (CDS) from alignment at scaffold_13:34559..36520-

>mRNA_5270 ID=mRNA_5270|Name=jgi.p|Nanoce1779_2|591969|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_13:34559..36520- (Nannochloropsis oceanica)
ATCGATACTTCGAAGCAAGGCGAGGAGGTGTTTTCCGAAGCCCGTTCCCT
CCTCTTCAAGACTATTCGTGTTCGTCGTGTGTACGATAAAGATGCCCAGG
CATTAATTTACGTTTCGTATTCGACGCGATTTAACAATAAAGATGATGAT
AACAAAAGTCGGTTTAAATCGTCCATATGTGCAATTCCGCTGGACCAGGA
GGCGACACAGACAAATTAGGATCCTAAGGTAAAAGGGGTGACCCTGTATG
TCTCTGACTTCAAGCGCCCTATCACTGAGAGACTCGCGAAGGACTTCTTC
TCGGATCCGAGCCAAGCCTCCGTGGCGTGCGTGCGGACGGGCCTGGTGGT
GAAGGGGGATATGAAAGGAAACTTCCGTCTGCTTGCCAACACCATCTTCC
CCCTTTCCCTCTCCCTCCTCCCCTCGTTCTCGTCCTCCTTCCCTTCCTCG
CCCTCCTCTTTCGTGGTTCACGCTGCGGAAGACCGTCGACAGGTAGCGGA
TATACCAGCTTCTGGCCTCGTCTTCAAAGACACTATTAATGTAGAGGCTT
TCCAGATCGATACTTCGAAGCAAGGCGAGGAGGTGTTTTCCGAAGCCCGT
TCCCTCCTCTTCAAGACTATTCGTGTTCGTCGTGTGTACGATAAAGATGC
CCAGGCATTAATTTACGTTTCGTATTCGACGCGATTTAACAATAAAGATG
ATGATAACAAAAGTCGGTTTAAATCGTCCATATGTGCAATTCCGCTGGAC
CAGGAGGCGACACAGACAAATTAGGATCCTAAGGTAAAAGGGGTGACCCT
GTATGTCTCTGACTTCAAGCGCCCTATCACTGAGAGACTCGCGAAGGACT
TCTTCTCGGATCCGAGCCAAGCCTCCGTGGCGTGCGTGCGGACGGGCCTG
GTGGTGAAGGGGGATATGAAAGGAAACTTCCGTCTGCTTGCCAACACCAT
CTTCCCCCTTTCCCTCTCCCTCCTCCCCTCGTTCTCGTCCTCCTTCCCTT
CCTCGCCCTCCTCTTTCGTGGTTCACGCTGCGGAAGACCGTCGACAGGTA
GCGGATATACCAGCTTCTGGCCTCGTCTTCAAAGACACTATTAATGTAGA
GGCTTTCCAGATCGATACTTCGAAGCAAGGCGAGGAGGTGTTTTCCGAAG
CCCGTTCCCTCCTCTTCAAGACTATTCGTGTTCGTCGTGTGTACGATAAA
GATGCCCAGGCATTAATTTACGTTTCGTATTCGACGCGATTTAACAATAA
AGATGATGATAACAAAAGTCGGTTTAAATCGTCCATATGTGCAATTCCGC
TGGACCAGGAGGCGACACAGACAAATTAGGATCCTAAGGTAAAAGGGGTG
ACCCTGTATGTCTCTGACTTCAAGCGCCCTATCACTGAGAGACTCGCGAA
GGACTTCTTCTCGGATCCGAGCCAAGCCTCCGTGGCGTGCGTGCGGACGG
GCCTGGTGGTGAAGGGGGATATGAAAGGAAACTTCCGTCTGCTTGCCAAC
ACCATCTTCCCCCTTTCCCTCTCCCTCCTCCCCTCGTTCTCGTCCTCCTT
CCCTTCCTCGCCCTCCTCTTTCGTGGTTCACGCTGCGGAAGACCGTCGAC
AGGTAGCGGATATACCAGCTTCTGGCCTCGTCTTCAAAGACACTATTAAT
GTAGAGGCTTTCCAG
back to top
Synonyms
Publications