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Properties
| Property Name | Value |
|---|
| TranscriptId | 577674 |
| Track | FilteredModels2 |
| ProteinId | 577588 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1276202..1277650 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_527 ID=mRNA_527|Name=jgi.p|Nanoce1779_2|577588|organism=Nannochloropsis oceanica|type=mRNA|length=1160bp
TTCCCAAATGATTTCGTGGAACTGTTTTATTTCGTCAACTCGAATCCGCT
TTTGCGCCCCTTACTTCTGCCCTCATTCTATCAGGACCTCCTGTCGTCCC
TCATTTTTCAACACACATGCAAAAGCCTGTTAATGTTACTCCCCAAGGGC
CAGAGCCTTCGCCTAACCATTTCACTCAACCATTCTCGCGTTTCCGCCTC
ATAGATCCTTCCTTCCTCCTCCCCTTCTTTCTGTCTCTTGCCTTATCACA
CTCACACCTGCCCGCCTCCCTCCTCTACCCCACGGGTAGGAACCATCATC
TCATACATGCTCACAATACTCCCAAAGACCCCCTTCCCCATAGTCCCTTC
TTTCCTGACGTGCTCTATCTCGAACTTTATGTAGGTATACACAGCCAAGC
TATTGAAGGGAGCCCCCCCCAGCTTCACGGTGGCGTAGTTCTGAACGGTC
CTGGTGGCGTCGATTATGGCCATGGTGACGACGTCCGGATCCGTTGCCTT
ACCCTGTTCAAGACCCTCGCCCCTCTGAGAGCCCACACTCCTCATCGCCA
AGAGCGCCTTGAGGGCCTCTTCTTCCAGGTTGTGATAATTGGTGTTGCCC
ACTTTGACGAGCATGCCCGCCTCGTAGGCAATGGCCAAAAAGATAGGACG
ACGGTGCCGGACCCAGAATTTCTAAGTCCTGCCATATCCGTTGTCAATGT
GCCTGTTTTGGATATAGTGCGAGGACGGACCCTTCCCGCCTGGAGGCGCA
AGGAGGAAATAATACTGCAGCGGCTTCCCGTCCCCGACGGCTGAACGACT
GAACCACTCGCGGTAGACGTCAGTGACGGAGGTGACGCTAGTGCTCAACG
TGATCTCCGGCGGGCCGGGCGGTACAAGCAGTGTAAGCGCTTGCTTCAAG
AGCAGCTCCTCCCGAGGCTGTTGCTGCCGCTTCCTCTCCTCATCCCTCCC
CTTCTTCCGCAAACGCTGTCGCCTATTCTTCTCCTCGACTCCCTTCACAT
ACTCATTCACGACATCAACAGCCACAATTCTCCTCCTCCCTCTGCTTCCT
TAAGCACCGCCTCCCATCCCGTCCTCCTCGCCCTCATCCCCCCCCCAATT
CCCCTCCTCCTCCTCCTCCTCCCTTCTGCGCTTAGCCCAGCGCTGCTTTC
TATATTTTCT back to topprotein sequence of jgi.p|Nanoce1779_2|577588 >mRNA_527-protein ID=mRNA_527-protein|Name=jgi.p|Nanoce1779_2|577588|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MQKPVNVTPQGPEPSPNHFTQPFSRFRLIDPSFLLPFFLSLALSHSHLPA
SLLYPTGRNHHLIHAHNTPKDPLPHSPFFPDVLYLELYVGIHSQAIEGSP
PQLHGGVVLNGPGGVDYGHGDDVRIRCLTLFKTLAPLRAHTPHRQERLEG
LFFQVVIIGVAHFDEHARLVGNGQKDRTTVPDPEFLSPAISVVNVPVLDI
VRGRTLPAWRRKEEIILQRLPVPDG* back to topmRNA from alignment at scaffold_3:1276202..1277650+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_527 ID=mRNA_527|Name=jgi.p|Nanoce1779_2|577588|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp|location=Sequence derived from alignment at scaffold_3:1276202..1277650+ (Nannochloropsis oceanica)
TTCCCAAATGATTTCGTGGAACTGTTTTATTTCGTCAACTCGAATCCGCT
TTTGCGCCCCTTACTTCTGCCCTCATTCTATCAGGACCTCCTGTCGTCCC
TCATTTTTCAACACACATGCAAAAGCCTGTTAATGTTACTCCCCAAGGGC
CAGAGCCTTCGCCTAACCATTTCACTCAACCATTCTCGCGTTTCCGCCTC
ATAGATCCTTCCTTCCTCCTCCCCTTCTTTCTGTCTCTTGCCTTATCACA
CTCACACCTGCCCGCCTCCCTCCTCTACCCCACGGGTAGGAACCATCATC
TCATACATGCTCACAATACTCCCAAAGACCCCCTTCCCCATAGTCCCTTC
TTTCCTGACGTGCTCTATCTCGAACTTTATGTAGGTATACACAGCCAAGC
TATTGAAGGGAGCCCCCCCCAGCTTCACGGTGGCGTAGTTCTGAACGGTC
CTGGTGGCGTCGATTATGGCCATGGTGACGACGTCCGGATCCGTTGCCTT
ACCCTGTTCAAGACCCTCGCCCCTCTGAGAGCCCACACTCCTCATCGCCA
AGAGCGCCTTGAGGGCCTCTTCTTCCAGGTTGTGATAATTGGTGTTGCCC
ACTTTGACGAGCATGCCCGCCTGGGGGGAGGAATGAGGGAGGGAAGGTGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGAGTGAT
TGCCCATCTCAAAAACAAAGCTAGTGGCGTTTCAAGGAGCATTTCCATGC
TACTCAGTTGTCGCTCTCCTTGGTGGGGGAGGGAGGGAAAAAGGGAGATA
TGAGGGAGAGAGGGAGAGTGGGAGAGTGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGACCAGCAGCCGTCTCAACCTCCCCCT
GTGGCTTACCTCGTAGGCAATGGCCAAAAAGATAGGACGACGGTGCCGGA
CCCAGAATTTCTAAGTCCTGCCATATCCGTTGTCAATGTGCCTGTTTTGG
ATATAGTGCGAGGACGGACCCTTCCCGCCTGGAGGCGCAAGGAGGAAATA
ATACTGCAGCGGCTTCCCGTCCCCGACGGCTGAACGACTGAACCACTCGC
GGTAGACGTCAGTGACGGAGGTGACGCTAGTGCTCAACGTGATCTCCGGC
GGGCCGGGCGGTACAAGCAGTGTAAGCGCTTGCTTCAAGAGCAGCTCCTC
CCGAGGCTGTTGCTGCCGCTTCCTCTCCTCATCCCTCCCCTTCTTCCGCA
AACGCTGTCGCCTATTCTTCTCCTCGACTCCCTTCACATACTCATTCACG
ACATCAACAGCCACAATTCTCCTCCTCCCTCTGCTTCCTTAAGCACCGCC
TCCCATCCCGTCCTCCTCGCCCTCATCCCCCCCCCAATTCCCCTCCTCCT
CCTCCTCCTCCCTTCTGCGCTTAGCCCAGCGCTGCTTTCTATATTTTCT back to topCoding sequence (CDS) from alignment at scaffold_3:1276202..1277650+ >mRNA_527 ID=mRNA_527|Name=jgi.p|Nanoce1779_2|577588|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_3:1276202..1277650+ (Nannochloropsis oceanica)
ATGCAAAAGCCTGTTAATGTTACTCCCCAAGGGCCAGAGCCTTCGCCTAA
CCATTTCACTCAACCATTCTCGCGTTTCCGCCTCATAGATCCTTCCTTCC
TCCTCCCCTTCTTTCTGTCTCTTGCCTTATCACACTCACACCTGCCCGCC
TCCCTCCTCTACCCCACGGGTAGGAACCATCATCTCATACATGCTCACAA
TACTCCCAAAGACCCCCTTCCCCATAGTCCCTTCTTTCCTGACGTGCTCT
ATCTCGAACTTTATGTAGGTATACACAGCCAAGCTATTGAAGGGAGCCCC
CCCCAGCTTCACGGTGGCGTAGTTCTGAACGGTCCTGGTGGCGTCGATTA
TGGCCATGGTGACGACGTCCGGATCCGTTGCCTTACCCTGTTCAAGACCC
TCGCCCCTCTGAGAGCCCACACTCCTCATCGCCAAGAGCGCCTTGAGGGC
CTCTTCTTCCAGGTTGTGATAATTGGTGTTGCCCACTTTGACGAGCATGC
CCGCCTCGTAGGCAATGGCCAAAAAGATAGGACGACGGTGCCGGACCCAG
AATTTCTAAGTCCTGCCATATCCGTTGTCAATGTGCCTGTTTTGGATATA
GTGCGAGGACGGACCCTTCCCGCCTGGAGGCGCAAGGAGGAAATAATACT
GCAGCGGCTTCCCGTCCCCGACGGCTGAATGCAAAAGCCTGTTAATGTTA
CTCCCCAAGGGCCAGAGCCTTCGCCTAACCATTTCACTCAACCATTCTCG
CGTTTCCGCCTCATAGATCCTTCCTTCCTCCTCCCCTTCTTTCTGTCTCT
TGCCTTATCACACTCACACCTGCCCGCCTCCCTCCTCTACCCCACGGGTA
GGAACCATCATCTCATACATGCTCACAATACTCCCAAAGACCCCCTTCCC
CATAGTCCCTTCTTTCCTGACGTGCTCTATCTCGAACTTTATGTAGGTAT
ACACAGCCAAGCTATTGAAGGGAGCCCCCCCCAGCTTCACGGTGGCGTAG
TTCTGAACGGTCCTGGTGGCGTCGATTATGGCCATGGTGACGACGTCCGG
ATCCGTTGCCTTACCCTGTTCAAGACCCTCGCCCCTCTGAGAGCCCACAC
TCCTCATCGCCAAGAGCGCCTTGAGGGCCTCTTCTTCCAGGTTGTGATAA
TTGGTGTTGCCCACTTTGACGAGCATGCCCGCCTCGTAGGCAATGGCCAA
AAAGATAGGACGACGGTGCCGGACCCAGAATTTCTAAGTCCTGCCATATC
CGTTGTCAATGTGCCTGTTTTGGATATAGTGCGAGGACGGACCCTTCCCG
CCTGGAGGCGCAAGGAGGAAATAATACTGCAGCGGCTTCCCGTCCCCGAC
GGCTGA back to top
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