jgi.p|Nanoce1779_2|591960, mRNA_5268 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591960
Unique Name	mRNA_5268
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1543
Alignment location	scaffold_13:26842..28741 -

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Properties


Property Name	Value
TranscriptId	592046
Track	FilteredModels2
ProteinId	591960

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:26842..28741 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591960	gene_5268	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591960	mRNA_5268-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5268	CDS_5268	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:26842..28741-
coding sequence from alignment at scaffold_13:26842..28741-

mRNA sequence

>mRNA_5268 ID=mRNA_5268|Name=jgi.p|Nanoce1779_2|591960|organism=Nannochloropsis oceanica|type=mRNA|length=1543bp
AGACAAAAAGGCACCCGCCACTATGACTGCCTCTACTGCCGCTGCAACAG
CTGCCACGGTAGCCACCCTGCCTTTACGCATTGCCTCCTTTTTGCCCGCC
GCGACCGAAATGCTTTTCAGTCTGGGCCTGGGCGACTTGGTCTGTGGCAT
CACGCACGAATGCGACTACCCTCCCGAGGCCAAACAAAAACCTGTCGTCG
TCGAGTGCGTCCTGGATCTCGAAGGTCTGACCATGAAAGAAATCGATGAA
GCGGTTTCTGCTCGTCTCAAATCGGGCAAATCCCTTTACAACGTTAACGA
GGACAAGCTCAGAATTGCGGCGCCCACCTTGCTGGTCACGCAAAACCTTT
GCCAGGTCTGCGGGCCTTCCGGGAATGAAGTCACTCAGGTCCTAAAAACT
CTGAAGCCCCCTCCCACCATCGTGTGGCAGACCCCCAAAACCTTCGAGGA
AGTGCTATCTGCCTACCTGGAACTGGGCCGCGCCACAGGCAAAGAAAAGG
AGGCCGAGAAGTGGGTCCAGGAATCAAGAGCGAAAGTAAAGGAGATCAGA
GAGAATGTCCAGGCGGTGATGAGCAGAAAAGAAGGGGGAAAGGCGGTGCG
TGTGGCATTCGTGGAGTGGATCGATCCGATCTTCGCGGGGGGTCATTGGG
TGGGTGAGATGTTGGAATGGGCCGGTGGAGACGACGCCAACAGCAGGAAA
GGCAAGGATTCGGTTCGTGTGCCTTGGGATGATGTGCTGGCATGGCAGCC
GGAGGTCATCATCGTCTCTCCCTGTGGGTTTGACTTGAAGAAAAGCACGG
AGCAGGCAAAGTTGTTGATGAAGAGGGATGGGTTCATGGATTTACCAGCG
GCGAAGCAAGATCGCGTGTATGCGGTCGATGCCAATGGCTACTTTGCGAG
GCCGGGGATTCGACTGGTGGAAGGGGTGTTGCTGCTCGCGCATATGATTC
ATGGTGGGGAGAACTTTCCGTGGACGGGAGCGGAAGATGCGTTTGCGCGG
GTGCCGGTTGAAGGGGAGGAAGGGAGGGAGGAAACAAAGGAGGAGAAGGA
AAATGGGAAGGGTAGAGGAGAGGAGGTGGAGATGAAGATTAACGAGGCGT
GAGCCCACAGAGAGCAGACTTTTCCGGGATGTCAAAATAATGGTGAGGAG
ATTTGAAATCGAAGGACTTAGAAGAGGAAGCAGAGGGTGAGTATAATGCC
CCAGGCAGGTGGAGTGCTGTCTAAGTTCCGTCTCCGTCGCCATCATTGAA
TTGATAAACCTGAATAATTGAGCATACAATTACAACAGATATGCCGGAAG
ACATGAAGAAACATAAAAAGAATGGGACCGAGAAAACTGTGCGATTTTTT
TTTGGGACAGACGAGAAAAGAGGGACGAGCTGAGTGTTATCGATTTGATC
GCCTGCGTTTGTGTGAATGATTGAAAGGATAGTGGGTGGACTCAAATATT
TAAAAAAATGAAAATGAAGAAAAAAAAGAAACAAAGACAGGTTGTGGAAC
CAAAAGAAAATAAATGCACAACTGCTGCTGTTGTGGCTGCCGC

protein sequence of jgi.p|Nanoce1779_2|591960

>mRNA_5268-protein ID=mRNA_5268-protein|Name=jgi.p|Nanoce1779_2|591960|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MTASTAAATAATVATLPLRIASFLPAATEMLFSLGLGDLVCGITHECDYP
PEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAA
PTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLE
LGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWI
DPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSP
CGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVE
GVLLLAHMIHGGENFPWTGAEDAFARVPVEGEEGREETKEEKENGKGRGE
EVEMKINEA*

mRNA from alignment at scaffold_13:26842..28741-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5268 ID=mRNA_5268|Name=jgi.p|Nanoce1779_2|591960|organism=Nannochloropsis oceanica|type=mRNA|length=1900bp|location=Sequence derived from alignment at scaffold_13:26842..28741- (Nannochloropsis oceanica)
AGACAAAAAGGCACCCGCCACTATGACTGCCTCTACTGCCGCTGCAACAG
CTGCCACGGTAGCCACCCTGCCTTTACGCATTGCCTCCTTTTTGCCCGCC
GCGACCGAAATGCTTTTCAGTCTGGGCCTGGGCGACTTGGTCTGTGGCAT
CACGCACGAATGCGACTACCCTCCCGAGGTAAGGGTCTTGTTTTCCTTTC
TCCTCTTCTGAAGATCATGGAGTCAAAGCGATCACCCCTTTATTCATCCA
CCCCTCACTCCTCAATTCGTCCCTTAACCCCCAAAACAGGCCAAACAAAA
ACCTGTCGTCGTCGAGTGCGTCCTGGATCTCGAAGGTCTGACCATGAAAG
AAATCGATGAAGCGGTTTCTGCTCGTCTCAAATCGGGCAAATCCCTTTAC
AACGTTAACGAGGACAAGCTCAGAATTGCGGCGCCCACCTTGCTGGTCAC
GCAAAACCTTTGCCAGGTCTGCGGGCCTTCCGGGAATGAAGTCACTCAGG
TATGTTTTGCTTGTTATTTTGGTCTTTATTTTTGTCGTTCATGAATGTAT
TCACTTGATCTGACCTTATAAATTGACCCAAAGCCAGAATGTACTTGGGT
GATCATGGGTGAGGACAAAGAGATCTGCCTTTCTTCCTTACCGTTTATGA
TGTAAGGAGGAGGCCAGGAGGCCACTGCTGAAAGACTAATCGGCATCCAC
ATGTCTCAATGTCCCCGACACCTCCCTTCAATCAAACCTTCACAGGTCCT
AAAAACTCTGAAGCCCCCTCCCACCATCGTGTGGCAGACCCCCAAAACCT
TCGAGGAAGTGCTATCTGCCTACCTGGAACTGGGCCGCGCCACAGGCAAA
GAAAAGGAGGCCGAGAAGTGGGTCCAGGAATCAAGAGCGAAAGTAAAGGA
GATCAGAGAGAATGTCCAGGCGGTGATGAGCAGAAAAGAAGGGGGAAAGG
CGGTGCGTGTGGCATTCGTGGAGTGGATCGATCCGATCTTCGCGGGGGGT
CATTGGGTGGGTGAGATGTTGGAATGGGCCGGTGGAGACGACGCCAACAG
CAGGAAAGGCAAGGATTCGGTTCGTGTGCCTTGGGATGATGTGCTGGCAT
GGCAGCCGGAGGTCATCATCGTCTCTCCCTGTGGGTTTGACTTGAAGAAA
AGCACGGAGCAGGCAAAGTTGTTGATGAAGAGGGATGGGTTCATGGATTT
ACCAGCGGCGAAGCAAGATCGCGTGTATGCGGTCGATGCCAATGGCTACT
TTGCGAGGCCGGGGATTCGACTGGTGGAAGGGGTGTTGCTGCTCGCGCAT
ATGATTCATGGTGGGGAGAACTTTCCGTGGACGGGAGCGGAAGATGCGTT
TGCGCGGGTGCCGGTTGAAGGGGAGGAAGGGAGGGAGGAAACAAAGGAGG
AGAAGGAAAATGGGAAGGGTAGAGGAGAGGAGGTGGAGATGAAGATTAAC
GAGGCGTGAGCCCACAGAGAGCAGACTTTTCCGGGATGTCAAAATAATGG
TGAGGAGATTTGAAATCGAAGGACTTAGAAGAGGAAGCAGAGGGTGAGTA
TAATGCCCCAGGCAGGTGGAGTGCTGTCTAAGTTCCGTCTCCGTCGCCAT
CATTGAATTGATAAACCTGAATAATTGAGCATACAATTACAACAGATATG
CCGGAAGACATGAAGAAACATAAAAAGAATGGGACCGAGAAAACTGTGCG
ATTTTTTTTTGGGACAGACGAGAAAAGAGGGACGAGCTGAGTGTTATCGA
TTTGATCGCCTGCGTTTGTGTGAATGATTGAAAGGATAGTGGGTGGACTC
AAATATTTAAAAAAATGAAAATGAAGAAAAAAAAGAAACAAAGACAGGTT
GTGGAACCAAAAGAAAATAAATGCACAACTGCTGCTGTTGTGGCTGCCGC

Coding sequence (CDS) from alignment at scaffold_13:26842..28741-

>mRNA_5268 ID=mRNA_5268|Name=jgi.p|Nanoce1779_2|591960|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_13:26842..28741- (Nannochloropsis oceanica)
GTCCTAAAAACTCTGAAGCCCCCTCCCACCATCGTGTGGCAGACCCCCAA
AACCTTCGAGGAAGTGCTATCTGCCTACCTGGAACTGGGCCGCGCCACAG
GCAAAGAAAAGGAGGCCGAGAAGTGGGTCCAGGAATCAAGAGCGAAAGTA
AAGGAGATCAGAGAGAATGTCCAGGCGGTGATGAGCAGAAAAGAAGGGGG
AAAGGCGGTGCGTGTGGCATTCGTGGAGTGGATCGATCCGATCTTCGCGG
GGGGTCATTGGGTGGGTGAGATGTTGGAATGGGCCGGTGGAGACGACGCC
AACAGCAGGAAAGGCAAGGATTCGGTTCGTGTGCCTTGGGATGATGTGCT
GGCATGGCAGCCGGAGGTCATCATCGTCTCTCCCTGTGGGTTTGACTTGA
AGAAAAGCACGGAGCAGGCAAAGTTGTTGATGAAGAGGGATGGGTTCATG
GATTTACCAGCGGCGAAGCAAGATCGCGTGTATGCGGTCGATGCCAATGG
CTACTTTGCGAGGCCGGGGATTCGACTGGTGGAAGGGGTGTTGCTGCTCG
CGCATATGATTCATGGTGGGGAGAACTTTCCGTGGACGGGAGCGGAAGAT
GCGTTTGCGCGGGTGCCGGTTGAAGGGGAGGAAGGGAGGGAGGAAACAAA
GGAGGAGAAGGAAAATGGGAAGGGTAGAGGAGAGGAGGTGGAGATGAAGA
TTAACGAGGCGTGAGCCAAACAAAAACCTGTCGTCGTCGAGTGCGTCCTG
GATCTCGAAGGTCTGACCATGAAAGAAATCGATGAAGCGGTTTCTGCTCG
TCTCAAATCGGGCAAATCCCTTTACAACGTTAACGAGGACAAGCTCAGAA
TTGCGGCGCCCACCTTGCTGGTCACGCAAAACCTTTGCCAGGTCTGCGGG
CCTTCCGGGAATGAAGTCACTCAGATGACTGCCTCTACTGCCGCTGCAAC
AGCTGCCACGGTAGCCACCCTGCCTTTACGCATTGCCTCCTTTTTGCCCG
CCGCGACCGAAATGCTTTTCAGTCTGGGCCTGGGCGACTTGGTCTGTGGC
ATCACGCACGAATGCGACTACCCTCCCGAGGTCCTAAAAACTCTGAAGCC
CCCTCCCACCATCGTGTGGCAGACCCCCAAAACCTTCGAGGAAGTGCTAT
CTGCCTACCTGGAACTGGGCCGCGCCACAGGCAAAGAAAAGGAGGCCGAG
AAGTGGGTCCAGGAATCAAGAGCGAAAGTAAAGGAGATCAGAGAGAATGT
CCAGGCGGTGATGAGCAGAAAAGAAGGGGGAAAGGCGGTGCGTGTGGCAT
TCGTGGAGTGGATCGATCCGATCTTCGCGGGGGGTCATTGGGTGGGTGAG
ATGTTGGAATGGGCCGGTGGAGACGACGCCAACAGCAGGAAAGGCAAGGA
TTCGGTTCGTGTGCCTTGGGATGATGTGCTGGCATGGCAGCCGGAGGTCA
TCATCGTCTCTCCCTGTGGGTTTGACTTGAAGAAAAGCACGGAGCAGGCA
AAGTTGTTGATGAAGAGGGATGGGTTCATGGATTTACCAGCGGCGAAGCA
AGATCGCGTGTATGCGGTCGATGCCAATGGCTACTTTGCGAGGCCGGGGA
TTCGACTGGTGGAAGGGGTGTTGCTGCTCGCGCATATGATTCATGGTGGG
GAGAACTTTCCGTGGACGGGAGCGGAAGATGCGTTTGCGCGGGTGCCGGT
TGAAGGGGAGGAAGGGAGGGAGGAAACAAAGGAGGAGAAGGAAAATGGGA
AGGGTAGAGGAGAGGAGGTGGAGATGAAGATTAACGAGGCGTGAGCCAAA
CAAAAACCTGTCGTCGTCGAGTGCGTCCTGGATCTCGAAGGTCTGACCAT
GAAAGAAATCGATGAAGCGGTTTCTGCTCGTCTCAAATCGGGCAAATCCC
TTTACAACGTTAACGAGGACAAGCTCAGAATTGCGGCGCCCACCTTGCTG
GTCACGCAAAACCTTTGCCAGGTCTGCGGGCCTTCCGGGAATGAAGTCAC
TCAGATGACTGCCTCTACTGCCGCTGCAACAGCTGCCACGGTAGCCACCC
TGCCTTTACGCATTGCCTCCTTTTTGCCCGCCGCGACCGAAATGCTTTTC
AGTCTGGGCCTGGGCGACTTGGTCTGTGGCATCACGCACGAATGCGACTA
CCCTCCCGAGGTCCTAAAAACTCTGAAGCCCCCTCCCACCATCGTGTGGC
AGACCCCCAAAACCTTCGAGGAAGTGCTATCTGCCTACCTGGAACTGGGC
CGCGCCACAGGCAAAGAAAAGGAGGCCGAGAAGTGGGTCCAGGAATCAAG
AGCGAAAGTAAAGGAGATCAGAGAGAATGTCCAGGCGGTGATGAGCAGAA
AAGAAGGGGGAAAGGCGGTGCGTGTGGCATTCGTGGAGTGGATCGATCCG
ATCTTCGCGGGGGGTCATTGGGTGGGTGAGATGTTGGAATGGGCCGGTGG
AGACGACGCCAACAGCAGGAAAGGCAAGGATTCGGTTCGTGTGCCTTGGG
ATGATGTGCTGGCATGGCAGCCGGAGGTCATCATCGTCTCTCCCTGTGGG
TTTGACTTGAAGAAAAGCACGGAGCAGGCAAAGTTGTTGATGAAGAGGGA
TGGGTTCATGGATTTACCAGCGGCGAAGCAAGATCGCGTGTATGCGGTCG
ATGCCAATGGCTACTTTGCGAGGCCGGGGATTCGACTGGTGGAAGGGGTG
TTGCTGCTCGCGCATATGATTCATGGTGGGGAGAACTTTCCGTGGACGGG
AGCGGAAGATGCGTTTGCGCGGGTGCCGGTTGAAGGGGAGGAAGGGAGGG
AGGAAACAAAGGAGGAGAAGGAAAATGGGAAGGGTAGAGGAGAGGAGGTG
GAGATGAAGATTAACGAGGCGTGAGCCAAACAAAAACCTGTCGTCGTCGA
GTGCGTCCTGGATCTCGAAGGTCTGACCATGAAAGAAATCGATGAAGCGG
TTTCTGCTCGTCTCAAATCGGGCAAATCCCTTTACAACGTTAACGAGGAC
AAGCTCAGAATTGCGGCGCCCACCTTGCTGGTCACGCAAAACCTTTGCCA
GGTCTGCGGGCCTTCCGGGAATGAAGTCACTCAGATGACTGCCTCTACTG
CCGCTGCAACAGCTGCCACGGTAGCCACCCTGCCTTTACGCATTGCCTCC
TTTTTGCCCGCCGCGACCGAAATGCTTTTCAGTCTGGGCCTGGGCGACTT
GGTCTGTGGCATCACGCACGAATGCGACTACCCTCCCGAG

Synonyms

Publications