jgi.p|Nanoce1779_2|591957, mRNA_5267 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591957
Unique Name	mRNA_5267
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1649
Alignment location	scaffold_13:24884..26532 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592043
Track	FilteredModels2
ProteinId	591957

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:24884..26532 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591957	gene_5267	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591957	mRNA_5267-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5267	CDS_5267	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:24884..26532+
coding sequence from alignment at scaffold_13:24884..26532+

mRNA sequence

>mRNA_5267 ID=mRNA_5267|Name=jgi.p|Nanoce1779_2|591957|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp
AACAGACCCAATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCA
CGCTGGCGTTTGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCC
TCCTCCCGCTTCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGC
CGCTGCCTCCAAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCC
GAGCCGCGGGGAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAA
GCTGATAACCTGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATT
GTTCAAGAAGGAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAG
TGATCATCATTCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAAT
CGCAACGTGGACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTA
TTTTTACGATATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACA
AGGGTGTGTGCCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGG
GAGGTGTTGTTTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGG
TCAGTTTGCAACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGA
CGGGCAAGCTTTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAAT
GGCGAGATCCCTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCAT
CGGTGACATTGGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGG
GAGACGCCATCGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAAT
ATGGCCATTGAAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGT
TACCCAGGAGTATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGA
TTTTCCAGGCGGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGAT
TTGAGCAGCCTGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCG
GGCGTTGGCGAAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTG
GGTCTTGCACGGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATT
TTGCAAGGCAATAAGGTGTCGGTCCCAACATTTTTGGTGCCGGCCACGAG
GAGAGTGTATGATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTGG
CGCAGATCTTTAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGC
GCGGCGTGCTTGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACC
CTTGTTGTGCGTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCC
ACAAGGACGCAGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCA
GCCGTGACTGGGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAA
TACGAGGCACCCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCG
TGTTTGCCAAGAAGTAAGGAGTAGGGGAATGAGGGAGGGGAGGGAGGGAG
GGAGGAGTTGGCTGAGATGCGCTTGTGAACATGGCGTGTTGATGAAGAG

protein sequence of jgi.p|Nanoce1779_2|591957

>mRNA_5267-protein ID=mRNA_5267-protein|Name=jgi.p|Nanoce1779_2|591957|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MAPATPAVALLGATLAFANAFVPPTPTVTSSSRFGSIRMMAGSVDGAAAS
KAPPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKK
EFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYD
ITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFA
TGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDI
GVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQE
YVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALA
KDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVY
DDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLC
VSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRH
PAETLASAPAKNSVFAKK*

mRNA from alignment at scaffold_13:24884..26532+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5267 ID=mRNA_5267|Name=jgi.p|Nanoce1779_2|591957|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at scaffold_13:24884..26532+ (Nannochloropsis oceanica)
AACAGACCCAATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCA
CGCTGGCGTTTGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCC
TCCTCCCGCTTCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGC
CGCTGCCTCCAAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCC
GAGCCGCGGGGAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAA
GCTGATAACCTGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATT
GTTCAAGAAGGAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAG
TGATCATCATTCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAAT
CGCAACGTGGACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTA
TTTTTACGATATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACA
AGGGTGTGTGCCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGG
GAGGTGTTGTTTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGG
TCAGTTTGCAACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGA
CGGGCAAGCTTTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAAT
GGCGAGATCCCTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCAT
CGGTGACATTGGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGG
GAGACGCCATCGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAAT
ATGGCCATTGAAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGT
TACCCAGGAGTATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGA
TTTTCCAGGCGGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGAT
TTGAGCAGCCTGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCG
GGCGTTGGCGAAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTG
GGTCTTGCACGGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATT
TTGCAAGGCAATAAGGTGTCGGTCCCAACATTTTTGGTGCCGGCCACGAG
GAGAGTGTATGATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTGG
CGCAGATCTTTAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGC
GCGGCGTGCTTGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACC
CTTGTTGTGCGTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCC
ACAAGGACGCAGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCA
GCCGTGACTGGGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAA
TACGAGGCACCCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCG
TGTTTGCCAAGAAGTAAGGAGTAGGGGAATGAGGGAGGGGAGGGAGGGAG
GGAGGAGTTGGCTGAGATGCGCTTGTGAACATGGCGTGTTGATGAAGAG

Coding sequence (CDS) from alignment at scaffold_13:24884..26532+

>mRNA_5267 ID=mRNA_5267|Name=jgi.p|Nanoce1779_2|591957|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_13:24884..26532+ (Nannochloropsis oceanica)
ATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCACGCTGGCGTT
TGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCCTCCTCCCGCT
TCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGCCGCTGCCTCC
AAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCCGAGCCGCGGG
GAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAAGCTGATAACC
TGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATTGTTCAAGAAG
GAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAGTGATCATCAT
TCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAATCGCAACGTGG
ACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTATTTTTACGAT
ATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACAAGGGTGTGTG
CCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGGGAGGTGTTGT
TTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGGTCAGTTTGCA
ACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGACGGGCAAGCT
TTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAATGGCGAGATCC
CTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCATCGGTGACATT
GGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGGGAGACGCCAT
CGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAATATGGCCATTG
AAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGTTACCCAGGAG
TATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGATTTTCCAGGC
GGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGATTTGAGCAGCC
TGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCGGGCGTTGGCG
AAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTGGGTCTTGCAC
GGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATTTTGCAAGGCA
ATAAGGTGTCGGTCCCAACATTTTTGGTGCCGGCCACGAGGAGAGTGTAT
GATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTGGCGCAGATCTT
TAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGCGCGGCGTGCT
TGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACCCTTGTTGTGC
GTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCCACAAGGACGC
AGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCAGCCGTGACTG
GGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAATACGAGGCAC
CCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCGTGTTTGCCAA
GAAGTAA

Synonyms

Publications