jgi.p|Nanoce1779_2|591936, mRNA_5264 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591936
Unique NamemRNA_5264
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1223
Alignment locationscaffold_13:15809..17031 -

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Properties
Property NameValue
TranscriptId592022
TrackFilteredModels2
ProteinId591936
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:15809..17031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591936gene_5264Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591936mRNA_5264-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5264CDS_5264Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5264 ID=mRNA_5264|Name=jgi.p|Nanoce1779_2|591936|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
GCTGTTCTGCATCCGATTAGCAGTCCTTTCGCCCGAAAATATAACGCAGA
GCTTGCAATTTTCATCTGCCGCATTCATACTACATCCCCACGATCCCTTA
TACCCGAGCCCTTACACTCACATCTCCACATTCACACCCACAAACAGACC
TCCAAGCACAGGATAGCGGCAAGGCAGCAGCTTGAACCTCCTCCTGTCTT
GGCACCAGCAAGACAGCCCGACTCTCATAATCGTCATTCCCCGAGCAAGC
TGTCCAACCCATGCCCTTGACACCCCCCGTCATCGCTTCCCCGCCGTCCT
CTGCCCGTCTGCTCGTGTGTTGCAAGGTCTATGTCTCCGAAGGCAGGAAT
CAAGTCGTGTTGGATCGCCTGGCCGAAGTGGCACGCACGGCCTCTCCCGG
GTTGTGTGCATTGGTCCAGCGCTTCACGGACGCCGTCTACCACCGCAGCA
ATTTTACATTGGGTGGGCCCCCGGGACCTGTGCTGGAGGTGGCTTTGAGG
GTGATTGACGAGGCTTTGGAGAATTTAGACATGACCCTGCACAGCGATGC
CACCCATCCGCGGGTGGGCGCTGTGGATCATGTTTCCTTCCACCCCCTGG
GGAGCACTCCGTTGGAGGCTGCCCGGAACGTCGCAATAGTACTAGGACAA
AGGGTTGGGGAGAAGTGGCCTGTGCCGGTTTTGATGTATGGGGCATGTAG
TTCTAGATCGTTGGCGGAAGTGCGGAGGAGCACGTCCTATTTCAAGGGGC
TGGCACTTGACAGCGAGATACCCCATGCTGATTTCGGGCCTACCCGCATA
GATCCCAAGTTGGGGTTGCTTTGTTGTGGTGCGGTGCCTTATGTCCAGAA
TTATAACATTCGGTTGAATACATCGGAGAAAGCGGTTGCGGCCAGGGTGA
CGCGTGCGGTGCGAAGCAAGGATGGAGGACCGGAGGGGGTGGAGGCCTTG
ACCTTGAGACATGACAGAGGGTTTATGGAAGTGGCGTGTAATTTACTCGA
TCTGAGTAAGACGGGTCCAGAGAAGGTTTTGGAGATTGTAAAGGAGGCGG
CGAGGGAGAATGGGGTTGAGGTGGAGGAGGCATATACGATTGGTTTGACG
GGGCAAGAGATATTGGAGGAGACGGAGCGATTATTGAGGGAAGAAGGGGA
TAAGAGTAGGGTAAGAATGTGAGAAATATTGAAGAAGGAACCAAAATGTA
ATGTAAAAAAAATGATGGATGAC
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protein sequence of jgi.p|Nanoce1779_2|591936

>mRNA_5264-protein ID=mRNA_5264-protein|Name=jgi.p|Nanoce1779_2|591936|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MPLTPPVIASPPSSARLLVCCKVYVSEGRNQVVLDRLAEVARTASPGLCA
LVQRFTDAVYHRSNFTLGGPPGPVLEVALRVIDEALENLDMTLHSDATHP
RVGAVDHVSFHPLGSTPLEAARNVAIVLGQRVGEKWPVPVLMYGACSSRS
LAEVRRSTSYFKGLALDSEIPHADFGPTRIDPKLGLLCCGAVPYVQNYNI
RLNTSEKAVAARVTRAVRSKDGGPEGVEALTLRHDRGFMEVACNLLDLSK
TGPEKVLEIVKEAARENGVEVEEAYTIGLTGQEILEETERLLREEGDKSR
VRM*
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mRNA from alignment at scaffold_13:15809..17031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5264 ID=mRNA_5264|Name=jgi.p|Nanoce1779_2|591936|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp|location=Sequence derived from alignment at scaffold_13:15809..17031- (Nannochloropsis oceanica)
GCTGTTCTGCATCCGATTAGCAGTCCTTTCGCCCGAAAATATAACGCAGA
GCTTGCAATTTTCATCTGCCGCATTCATACTACATCCCCACGATCCCTTA
TACCCGAGCCCTTACACTCACATCTCCACATTCACACCCACAAACAGACC
TCCAAGCACAGGATAGCGGCAAGGCAGCAGCTTGAACCTCCTCCTGTCTT
GGCACCAGCAAGACAGCCCGACTCTCATAATCGTCATTCCCCGAGCAAGC
TGTCCAACCCATGCCCTTGACACCCCCCGTCATCGCTTCCCCGCCGTCCT
CTGCCCGTCTGCTCGTGTGTTGCAAGGTCTATGTCTCCGAAGGCAGGAAT
CAAGTCGTGTTGGATCGCCTGGCCGAAGTGGCACGCACGGCCTCTCCCGG
GTTGTGTGCATTGGTCCAGCGCTTCACGGACGCCGTCTACCACCGCAGCA
ATTTTACATTGGGTGGGCCCCCGGGACCTGTGCTGGAGGTGGCTTTGAGG
GTGATTGACGAGGCTTTGGAGAATTTAGACATGACCCTGCACAGCGATGC
CACCCATCCGCGGGTGGGCGCTGTGGATCATGTTTCCTTCCACCCCCTGG
GGAGCACTCCGTTGGAGGCTGCCCGGAACGTCGCAATAGTACTAGGACAA
AGGGTTGGGGAGAAGTGGCCTGTGCCGGTTTTGATGTATGGGGCATGTAG
TTCTAGATCGTTGGCGGAAGTGCGGAGGAGCACGTCCTATTTCAAGGGGC
TGGCACTTGACAGCGAGATACCCCATGCTGATTTCGGGCCTACCCGCATA
GATCCCAAGTTGGGGTTGCTTTGTTGTGGTGCGGTGCCTTATGTCCAGAA
TTATAACATTCGGTTGAATACATCGGAGAAAGCGGTTGCGGCCAGGGTGA
CGCGTGCGGTGCGAAGCAAGGATGGAGGACCGGAGGGGGTGGAGGCCTTG
ACCTTGAGACATGACAGAGGGTTTATGGAAGTGGCGTGTAATTTACTCGA
TCTGAGTAAGACGGGTCCAGAGAAGGTTTTGGAGATTGTAAAGGAGGCGG
CGAGGGAGAATGGGGTTGAGGTGGAGGAGGCATATACGATTGGTTTGACG
GGGCAAGAGATATTGGAGGAGACGGAGCGATTATTGAGGGAAGAAGGGGA
TAAGAGTAGGGTAAGAATGTGAGAAATATTGAAGAAGGAACCAAAATGTA
ATGTAAAAAAAATGATGGATGAC
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Coding sequence (CDS) from alignment at scaffold_13:15809..17031-

>mRNA_5264 ID=mRNA_5264|Name=jgi.p|Nanoce1779_2|591936|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_13:15809..17031- (Nannochloropsis oceanica)
ATGCCCTTGACACCCCCCGTCATCGCTTCCCCGCCGTCCTCTGCCCGTCT
GCTCGTGTGTTGCAAGGTCTATGTCTCCGAAGGCAGGAATCAAGTCGTGT
TGGATCGCCTGGCCGAAGTGGCACGCACGGCCTCTCCCGGGTTGTGTGCA
TTGGTCCAGCGCTTCACGGACGCCGTCTACCACCGCAGCAATTTTACATT
GGGTGGGCCCCCGGGACCTGTGCTGGAGGTGGCTTTGAGGGTGATTGACG
AGGCTTTGGAGAATTTAGACATGACCCTGCACAGCGATGCCACCCATCCG
CGGGTGGGCGCTGTGGATCATGTTTCCTTCCACCCCCTGGGGAGCACTCC
GTTGGAGGCTGCCCGGAACGTCGCAATAGTACTAGGACAAAGGGTTGGGG
AGAAGTGGCCTGTGCCGGTTTTGATGTATGGGGCATGTAGTTCTAGATCG
TTGGCGGAAGTGCGGAGGAGCACGTCCTATTTCAAGGGGCTGGCACTTGA
CAGCGAGATACCCCATGCTGATTTCGGGCCTACCCGCATAGATCCCAAGT
TGGGGTTGCTTTGTTGTGGTGCGGTGCCTTATGTCCAGAATTATAACATT
CGGTTGAATACATCGGAGAAAGCGGTTGCGGCCAGGGTGACGCGTGCGGT
GCGAAGCAAGGATGGAGGACCGGAGGGGGTGGAGGCCTTGACCTTGAGAC
ATGACAGAGGGTTTATGGAAGTGGCGTGTAATTTACTCGATCTGAGTAAG
ACGGGTCCAGAGAAGGTTTTGGAGATTGTAAAGGAGGCGGCGAGGGAGAA
TGGGGTTGAGGTGGAGGAGGCATATACGATTGGTTTGACGGGGCAAGAGA
TATTGGAGGAGACGGAGCGATTATTGAGGGAAGAAGGGGATAAGAGTAGG
GTAAGAATGTGA
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Synonyms
Publications