jgi.p|Nanoce1779_2|591932, mRNA_5263 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591932
Unique NamemRNA_5263
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length505
Alignment locationscaffold_13:14686..15190 -

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Properties
Property NameValue
TranscriptId592018
TrackFilteredModels2
ProteinId591932
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:14686..15190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591932gene_5263Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591932mRNA_5263-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5263CDS_5263Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5263 ID=mRNA_5263|Name=jgi.p|Nanoce1779_2|591932|organism=Nannochloropsis oceanica|type=mRNA|length=505bp
CGATTTTAAAATATGGGCTTTTACCCTCCGTGTCCATGCGTGCAGCCATG
TACTTTGAGAACTTCCTCGCATGGCTCTTAAAGGCCTTCGTACCAATGTT
TGTGGCTATTTCAGCACACCGACCCCCTAGCGTGGCTTTGTCAATCTGGT
TCTGGAGAAGCAGAGAGAGACCCTCTCCCGTCTGTCTAGATGTTGCTGCC
CTTTTCCTGGCTTGCGACCAACCCCACACCCACCGCCCAAAGCGCCATAC
ATCCCACAGAAGCCAGGCATATTTGGGAGGGCTGTATAACTAGCCATTTC
TGGAACCGGTGCCGCCACTTGCCCTCACAATCCAGAGCAAACATGTCCGA
CTTTGATCCTAGCACGAAGACGCCCATAAGCTCGATCACACCAACCACGC
CCCTTCCCCATCCCTACAAACACAGCACACCATGGCGGCCATCAGCTTGG
ATGCCATCTACGACATTGACCTGGCTCTTACCACCACGGGTACGTGACTT
TCTGG
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protein sequence of jgi.p|Nanoce1779_2|591932

>mRNA_5263-protein ID=mRNA_5263-protein|Name=jgi.p|Nanoce1779_2|591932|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MRAAMYFENFLAWLLKAFVPMFVAISAHRPPSVALSIWFWRSRERPSPVC
LDVAALFLACDQPHTHRPKRHTSHRSQAYLGGLY
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mRNA from alignment at scaffold_13:14686..15190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5263 ID=mRNA_5263|Name=jgi.p|Nanoce1779_2|591932|organism=Nannochloropsis oceanica|type=mRNA|length=505bp|location=Sequence derived from alignment at scaffold_13:14686..15190- (Nannochloropsis oceanica)
CGATTTTAAAATATGGGCTTTTACCCTCCGTGTCCATGCGTGCAGCCATG
TACTTTGAGAACTTCCTCGCATGGCTCTTAAAGGCCTTCGTACCAATGTT
TGTGGCTATTTCAGCACACCGACCCCCTAGCGTGGCTTTGTCAATCTGGT
TCTGGAGAAGCAGAGAGAGACCCTCTCCCGTCTGTCTAGATGTTGCTGCC
CTTTTCCTGGCTTGCGACCAACCCCACACCCACCGCCCAAAGCGCCATAC
ATCCCACAGAAGCCAGGCATATTTGGGAGGGCTGTATAACTAGCCATTTC
TGGAACCGGTGCCGCCACTTGCCCTCACAATCCAGAGCAAACATGTCCGA
CTTTGATCCTAGCACGAAGACGCCCATAAGCTCGATCACACCAACCACGC
CCCTTCCCCATCCCTACAAACACAGCACACCATGGCGGCCATCAGCTTGG
ATGCCATCTACGACATTGACCTGGCTCTTACCACCACGGGTACGTGACTT
TCTGG
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Coding sequence (CDS) from alignment at scaffold_13:14686..15190-

>mRNA_5263 ID=mRNA_5263|Name=jgi.p|Nanoce1779_2|591932|organism=Nannochloropsis oceanica|type=CDS|length=254bp|location=Sequence derived from alignment at scaffold_13:14686..15190- (Nannochloropsis oceanica)
ATGCGTGCAGCCATGTACTTTGAGAACTTCCTCGCATGGCTCTTAAAGGC
CTTCGTACCAATGTTTGTGGCTATTTCAGCACACCGACCCCCTAGCGTGG
CTTTGTCAATCTGGTTCTGGAGAAGCAGAGAGAGACCCTCTCCCGTCTGT
CTAGATGTTGCTGCCCTTTTCCTGGCTTGCGACCAACCCCACACCCACCG
CCCAAAGCGCCATACATCCCACAGAAGCCAGGCATATTTGGGAGGGCTGT
ATAA
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Synonyms
Publications