jgi.p|Nanoce1779_2|591925, mRNA_5262 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591925
Unique NamemRNA_5262
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length971
Alignment locationscaffold_13:10670..12784 -

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Properties
Property NameValue
TranscriptId592011
TrackFilteredModels2
ProteinId591925
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:10670..12784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591925gene_5262Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591925mRNA_5262-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5262CDS_5262Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5262 ID=mRNA_5262|Name=jgi.p|Nanoce1779_2|591925|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
GGAGGGAGGGGGAGGGGGGTACGGGAGGAGGAATGGAGAGAAGAAGGAGG
GTTATGAGCGGTTGGGAGGCAGGAGGGGCGACGAGAGGGCCAGGATGCCT
GATGCTGGTGCTGCTAGTGCTGCTGCTGCTGAGGAGCTCGTGGAGGAGCA
GATGGAGTGCGAGGAGCCAACGCCGTTTGTGGCGATCAAGAACTTGAGCA
GCGACTTTGTCTCCCTCGACCTTCTCCGTCTGATTCAAGGCTGCTCCCCC
AACTATAAGGTGGCTCCTTGGGACCTCCTTTCCCTTCGTCGCAAAGGAAG
AAGGGGAGGAGGGGTGGCGTACCTGACGGTGGGGAATGTGAAGCTAGCAC
AGAAAATATGTGATGGACTGGAGGGGAGGAAGTTTGATGGGAAGAGGCTC
AGGACGGAATTTACTTTAGGGAAGCCTTGTAGGGATGTGTATGTGGCGGG
GGTAGGAGGGATGGAGGGATGGAGGGTGAGGGAGGTGATGGAGGAATGGG
GGGAGGTCTTGAGGGTGGAAGGGAAGAATGGCGATCGCAAAGGTGAGAAG
CGCGGAAAGGAGTGAGGAATAGATGGCGATGTGATCGAGTGTATGTCTGT
GTGCATGATGAATCCCCCCCCCTCTCTCTTCTCCTGTTGTCTTACTCATG
GACCTTTCTCCCTCCACCCGTTCCCCCCTCTCCTCCCTCTCTCTCAACCC
CTAGAAAAAGATTCAGACTTTGCCTTTGTCAACTACGCCGAGACCGGGGA
CGCCGTGGCTGCCATCAAAGCCATCTACCGGTGCGATGGGGAGATCGAAA
CTAACATCGACAACGAGCTTTTGTCGCTCAAGGCGACTTTCCGTCCCTTC
AAAGGACGGGCCAATCCGCATGCAGGCGGCCAAGGTGGGAGGGAGGGAGG
GGAGAGTGTCGACGGGGAACAGCCGGGAGGGAGGGATGGAGGAAGGGATC
GGGACTCCTTTGGAAAGCGGG
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protein sequence of jgi.p|Nanoce1779_2|591925

>mRNA_5262-protein ID=mRNA_5262-protein|Name=jgi.p|Nanoce1779_2|591925|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MPDAGAASAAAAEELVEEQMECEEPTPFVAIKNLSSDFVSLDLLRLIQGC
SPNYKVAPWDLLSLRRKGRRGGGVAYLTVGNVKLAQKICDGLEGRKFDGK
RLRTEFTLGKPCRDVYVAGVGGMEGWRVREVMEEWGEVLRVEGKNGDRKG
EKRGKE*
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mRNA from alignment at scaffold_13:10670..12784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5262 ID=mRNA_5262|Name=jgi.p|Nanoce1779_2|591925|organism=Nannochloropsis oceanica|type=mRNA|length=2115bp|location=Sequence derived from alignment at scaffold_13:10670..12784- (Nannochloropsis oceanica)
GGAGGGAGGGGGAGGGGGGTACGGGAGGAGGAATGGAGAGAAGAAGGAGG
GTTATGAGCGGTTGGGAGGCAGGAGGGGCGACGAGAGGGCCAGGATGCCT
GATGCTGGTGCTGCTAGTGCTGCTGCTGCTGAGGAGCTCGTGGAGGAGCA
GATGGAGTGCGAGGAGCCAACGCCGTTTGTGGCGATCAAGAACTTGAGCA
GGTGCGGACATTTCTTGGATTTTTCTTATTCTTCTCCTTCTTTTCTTTTA
TCTTTGGCTGGTGCGGCGTGATGTGGTGTCGGTAAAGTATGCTTTCTGGC
TCTGGATAGAGGACATTGGCACGGGCATGCGCATGCGTGTCTGTCCGTCC
TGCTTTTCCCTTTTGGTCTTTGATTTTGACAGGCCTGCACGGAAGAATCG
AATGTGGACACACTGAAATTGGGCGTGGACACATTGACGAGTTGGCAAGT
GGGCCCTGTTTGGAGTCCTTGACTTTTTTGTTGATATGTGGTTTTGAGCT
GTGAGCGGAGAGAACATATTTGGGTCTACGTTTCCGCTGCAGTTGTCAGA
TAGTCTTTTTTTTGACTCGTCGACAGCCACAAAGTTGCACCCCCTTGGGA
TTCGATCGATATGTTAAAGGACTTTGGTCGACGGCCACACTAAGAGATTT
GTTTTGGTCAGATGGTTGTATTACTGTGCCGCATCGTACCAGTTGTGCAA
CATGGATTAAGTAGTCGGTCGAACTTAATTGGAAATCTTTTGATTTTGAC
CTTTTGACGTGTTAGCGTACATGCCATTTAGTTGCTGCTGCACTAGCAGC
AGCAACAGCTGCGGAGATTTAAGTCCCATCCTGCACTTGCTACTTCTCTT
AGCTCCTCTGATTCGATGCGAGCGAGAGAGTATTTAGAGACTCTTGATTC
GAGAGAGTTACGATTCGAGATAGCAGAGCGCACGCACTTTGCATGGCTTG
GTGATGGACATGCCTTGCCCGCCCTTCATAAGCAAGCAAAGCAGTATATC
ATTTATATTCAAGCAATTGCCCCTCCTTTCGACCTACCTTCCACAGCCGG
AAGTGGTGGGACATTGACGAGGACCAAGAGAGAGAAAATAGAGAGTTAGA
TAGAGGTAGCGAGAATGAGAATTGGACTCTCACTTCACTTGCATTCTCTT
TCTTTTGATTACTCTCTTACCTACTCTTACCTTCACGCCTTGAGAATAAT
GTATGCCTCTCCCATGACCCTCTCCCCCTTCCCCTCTCATCCCTCTATAT
CTGTTTTTACGACATTGGACCGAAAAAAAAAACAATCCCAACTCTCACAC
CCGTCCCTTCCATCCCAACCCCACCGTCTCCCTCCATCCGTGCAGCGACT
TTGTCTCCCTCGACCTTCTCCGTCTGATTCAAGGCTGCTCCCCCAACTAT
AAGGTGGCTCCTTGGGACCTCCTTTCCCTTCGTCGCAAAGGAAGAAGGGG
AGGAGGGGTGGCGTACCTGACGGTGGGGAATGTGAAGCTAGCACAGAAAA
TATGTGATGGACTGGAGGGGAGGAAGTTTGATGGGAAGAGGCTCAGGACG
GAATTTACTTTAGGGAAGCCTTGTAGGGATGTGTATGTGGCGGGGGTAGG
AGGGATGGAGGGATGGAGGGTGAGGGAGGTGATGGAGGAATGGGGGGAGG
TCTTGAGGGTGGAAGGGAAGAATGGCGATCGCAAAGGTGAGAAGCGCGGA
AAGGAGTGAGGAATAGATGGCGATGTGATCGAGTGTATGTCTGTGTGCAT
GATGAATCCCCCCCCCTCTCTCTTCTCCTGTTGTCTTACTCATGGACCTT
TCTCCCTCCACCCGTTCCCCCCTCTCCTCCCTCTCTCTCAACCCCTAGAA
AAAGATTCAGACTTTGCCTTTGTCAACTACGCCGAGACCGGGGACGCCGT
GGCTGCCATCAAAGCCATCTACCGGTGCGATGGGGAGATCGAAACTAACA
TCGACAACGAGCTTTTGTCGCTCAAGGCGACTTTCCGTCCCTTCAAAGGA
CGGGCCAATCCGCATGCAGGCGGCCAAGGTGGGAGGGAGGGAGGGGAGAG
TGTCGACGGGGAACAGCCGGGAGGGAGGGATGGAGGAAGGGATCGGGACT
CCTTTGGAAAGCGGG
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Coding sequence (CDS) from alignment at scaffold_13:10670..12784-

>mRNA_5262 ID=mRNA_5262|Name=jgi.p|Nanoce1779_2|591925|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_13:10670..12784- (Nannochloropsis oceanica)
CGACTTTGTCTCCCTCGACCTTCTCCGTCTGATTCAAGGCTGCTCCCCCA
ACTATAAGGTGGCTCCTTGGGACCTCCTTTCCCTTCGTCGCAAAGGAAGA
AGGGGAGGAGGGGTGGCGTACCTGACGGTGGGGAATGTGAAGCTAGCACA
GAAAATATGTGATGGACTGGAGGGGAGGAAGTTTGATGGGAAGAGGCTCA
GGACGGAATTTACTTTAGGGAAGCCTTGTAGGGATGTGTATGTGGCGGGG
GTAGGAGGGATGGAGGGATGGAGGGTGAGGGAGGTGATGGAGGAATGGGG
GGAGGTCTTGAGGGTGGAAGGGAAGAATGGCGATCGCAAAGGTGAGAAGC
GCGGAAAGGAGTGAATGCCTGATGCTGGTGCTGCTAGTGCTGCTGCTGCT
GAGGAGCTCGTGGAGGAGCAGATGGAGTGCGAGGAGCCAACGCCGTTTGT
GGCGATCAAGAACTTGAGCAGCGACTTTGTCTCCCTCGACCTTCTCCGTC
TGATTCAAGGCTGCTCCCCCAACTATAAGGTGGCTCCTTGGGACCTCCTT
TCCCTTCGTCGCAAAGGAAGAAGGGGAGGAGGGGTGGCGTACCTGACGGT
GGGGAATGTGAAGCTAGCACAGAAAATATGTGATGGACTGGAGGGGAGGA
AGTTTGATGGGAAGAGGCTCAGGACGGAATTTACTTTAGGGAAGCCTTGT
AGGGATGTGTATGTGGCGGGGGTAGGAGGGATGGAGGGATGGAGGGTGAG
GGAGGTGATGGAGGAATGGGGGGAGGTCTTGAGGGTGGAAGGGAAGAATG
GCGATCGCAAAGGTGAGAAGCGCGGAAAGGAGTGAATGCCTGATGCTGGT
GCTGCTAGTGCTGCTGCTGCTGAGGAGCTCGTGGAGGAGCAGATGGAGTG
CGAGGAGCCAACGCCGTTTGTGGCGATCAAGAACTTGAGCAG
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Synonyms
Publications