jgi.p|Nanoce1779_2|591924, mRNA_5261 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591924
Unique NamemRNA_5261
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length748
Alignment locationscaffold_13:9969..10716 +

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Properties
Property NameValue
TranscriptId592010
TrackFilteredModels2
ProteinId591924
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:9969..10716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591924gene_5261Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591924mRNA_5261-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5261CDS_5261Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5261 ID=mRNA_5261|Name=jgi.p|Nanoce1779_2|591924|organism=Nannochloropsis oceanica|type=mRNA|length=748bp
GTTGTTCGAGTAGTGGTAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
CGTTGCCACCGCGGGTATCCATGGAGCGATTTCGCTTGCGTGACTGGTGG
GAAGGCTTGTGGTGCTTGCCGCTACTGCTACTGCTGCTGCTGCTGGGCCC
ACCATTAAACGTCCCTCCTCCCTTCTGATGCTGCCGCTGCTGCTGCTCGA
GATAACGCACCGATGCCCGACGCCCGCCCATATCCCCCCCAAGCCGGCCG
GGAGAATTAGAACGGGAGTAACGGCGGAAACGCGGCTGCTGCTGCTGTCG
GGGTTGGTACCGGTTCTGCTGCAGCTGCTCGTGGGGGGGACGACCGAAGG
AGCGCGAGCGAGAATAGCTTCGCCCCATGCTGAAAGAGTGGGAGCGGCTG
CGGCTGTGGCTGCCGGCGGAGTCGTAGGAGTCGTGGGAGCGAGACGTAGC
ACGCCCTCCCTTATTGCTCTTGAGGTGGTGGAAAGGGGCAGTGGAACTGG
AGGTGGCCGGGGGAGAGCGGCCCCGCGCGCTACCGCTGCCAGTGGACACA
GCAGCACGACGCACAGGAGAACGAGAACGAGCGCCAGCAGAGCGACCGTG
TCGATCTGCTCCTCCTCCTCGTCCTCCTTTTCCCTCAATCCCTCGACGGG
AGAAACGGTCCGCGCCATCTATCGACTGCTGGGCTGAGTAAGCCGCCCCC
CCCCGCTTTCCAAAGGAGTCCCGATCCCTTCCTCCATCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|591924

>mRNA_5261-protein ID=mRNA_5261-protein|Name=jgi.p|Nanoce1779_2|591924|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MLPLLLLEITHRCPTPAHIPPKPAGRIRTGVTAETRLLLLSGLVPVLLQL
LVGGTTEGARARIASPHAERVGAAAAVAAGGVVGVVGARRSTPSLIALEV
VERGSGTGGGRGRAAPRATAASGHSSTTHRRTRTSASRATVSICSSSSSS
FSLNPSTGETVRAIYRLLG*
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mRNA from alignment at scaffold_13:9969..10716+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5261 ID=mRNA_5261|Name=jgi.p|Nanoce1779_2|591924|organism=Nannochloropsis oceanica|type=mRNA|length=748bp|location=Sequence derived from alignment at scaffold_13:9969..10716+ (Nannochloropsis oceanica)
GTTGTTCGAGTAGTGGTAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
CGTTGCCACCGCGGGTATCCATGGAGCGATTTCGCTTGCGTGACTGGTGG
GAAGGCTTGTGGTGCTTGCCGCTACTGCTACTGCTGCTGCTGCTGGGCCC
ACCATTAAACGTCCCTCCTCCCTTCTGATGCTGCCGCTGCTGCTGCTCGA
GATAACGCACCGATGCCCGACGCCCGCCCATATCCCCCCCAAGCCGGCCG
GGAGAATTAGAACGGGAGTAACGGCGGAAACGCGGCTGCTGCTGCTGTCG
GGGTTGGTACCGGTTCTGCTGCAGCTGCTCGTGGGGGGGACGACCGAAGG
AGCGCGAGCGAGAATAGCTTCGCCCCATGCTGAAAGAGTGGGAGCGGCTG
CGGCTGTGGCTGCCGGCGGAGTCGTAGGAGTCGTGGGAGCGAGACGTAGC
ACGCCCTCCCTTATTGCTCTTGAGGTGGTGGAAAGGGGCAGTGGAACTGG
AGGTGGCCGGGGGAGAGCGGCCCCGCGCGCTACCGCTGCCAGTGGACACA
GCAGCACGACGCACAGGAGAACGAGAACGAGCGCCAGCAGAGCGACCGTG
TCGATCTGCTCCTCCTCCTCGTCCTCCTTTTCCCTCAATCCCTCGACGGG
AGAAACGGTCCGCGCCATCTATCGACTGCTGGGCTGAGTAAGCCGCCCCC
CCCCGCTTTCCAAAGGAGTCCCGATCCCTTCCTCCATCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_13:9969..10716+

>mRNA_5261 ID=mRNA_5261|Name=jgi.p|Nanoce1779_2|591924|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_13:9969..10716+ (Nannochloropsis oceanica)
ATGCTGCCGCTGCTGCTGCTCGAGATAACGCACCGATGCCCGACGCCCGC
CCATATCCCCCCCAAGCCGGCCGGGAGAATTAGAACGGGAGTAACGGCGG
AAACGCGGCTGCTGCTGCTGTCGGGGTTGGTACCGGTTCTGCTGCAGCTG
CTCGTGGGGGGGACGACCGAAGGAGCGCGAGCGAGAATAGCTTCGCCCCA
TGCTGAAAGAGTGGGAGCGGCTGCGGCTGTGGCTGCCGGCGGAGTCGTAG
GAGTCGTGGGAGCGAGACGTAGCACGCCCTCCCTTATTGCTCTTGAGGTG
GTGGAAAGGGGCAGTGGAACTGGAGGTGGCCGGGGGAGAGCGGCCCCGCG
CGCTACCGCTGCCAGTGGACACAGCAGCACGACGCACAGGAGAACGAGAA
CGAGCGCCAGCAGAGCGACCGTGTCGATCTGCTCCTCCTCCTCGTCCTCC
TTTTCCCTCAATCCCTCGACGGGAGAAACGGTCCGCGCCATCTATCGACT
GCTGGGCTGA
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Synonyms
Publications