jgi.p|Nanoce1779_2|577583, mRNA_526 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577583
Unique NamemRNA_526
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length908
Alignment locationscaffold_3:1273894..1274801 -

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Properties
Property NameValue
TranscriptId577669
TrackFilteredModels2
ProteinId577583
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1273894..1274801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577583gene_526Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577583mRNA_526-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_526CDS_526Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_526 ID=mRNA_526|Name=jgi.p|Nanoce1779_2|577583|organism=Nannochloropsis oceanica|type=mRNA|length=908bp
AGGCGGGTCTGTTTAGCCATGCAGATCTTCGTCAAGACCCTGACGGGCAA
GACCATCACCCTAGATGTTGAGCCCAGCGACACAATCGAGAATGTGAAGC
AAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAGCAGCGCCTCATC
TTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAACAT
TCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGAGGAA
AGAAGCGCAAGAAGAAGGTATACACGAAGCCCAAGAAGATCCCTCATAAG
CACAAGTCCGTCAAGCTCGCTACTCTCAAGTTCTACAAGGTTGAGGACGG
TGGGAAGGTGAAGCGATTGAGGAAGGACTGCCCGAAGTGTGGTGCCGGTG
TCCGTTTGGCCGTTCACAGTGATCGGTACTACTGCGGCAAGTGCACTGTG
ACAGTAAGTAATGGGTTTTTGATTGGAGAGGGGAGGATGAAGTGGGGGAT
AGAGCGAGAGGAAGAGAAACACAAACCTCACACTGAGTCAATAATTTGCT
CACTTATCACTTCTTTCCCCTTCTTCCACCGTACAGTACAAGTTCACCCA
GGAGATGGGCCAGGCTAGTTAGGTGAAAGTGGGAGGGGATGAAAAGAAGA
GCTCCCACGCCTTTTCTGGCCCCCAGAGCAACGACGACAAGATGGCATGA
GGAGCAAAGGACACAACAACAGAAAACCATGTTTACAAATCCGACTTTTA
AAACCAGGGAGTGAGAGGGCTGTGGAGGGAGGGTGAGGGAAGGAGGGAGG
GAGTTGATGGCTCCCCTCTGCGCAGGTGTTGTCTCGCCGGGAGGGCAGCA
ACTGGAAGAAGGAAGAACAAACGTCACCCCTTTTGAAGGCGCACACGAGA
CGGGATTT
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protein sequence of jgi.p|Nanoce1779_2|577583

>mRNA_526-protein ID=mRNA_526-protein|Name=jgi.p|Nanoce1779_2|577583|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKVYTKPKKIPHKHKSVKL
ATLKFYKVEDGGKVKRLRKDCPKCGAGVRLAVHSDRYYCGKCTVTVSNGF
LIGEGRMKWGIEREEEKHKPHTESIICSLITSFPFFHRTVQVHPGDGPG*
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mRNA from alignment at scaffold_3:1273894..1274801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_526 ID=mRNA_526|Name=jgi.p|Nanoce1779_2|577583|organism=Nannochloropsis oceanica|type=mRNA|length=908bp|location=Sequence derived from alignment at scaffold_3:1273894..1274801- (Nannochloropsis oceanica)
AGGCGGGTCTGTTTAGCCATGCAGATCTTCGTCAAGACCCTGACGGGCAA
GACCATCACCCTAGATGTTGAGCCCAGCGACACAATCGAGAATGTGAAGC
AAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAGCAGCGCCTCATC
TTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAACAT
TCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGAGGAA
AGAAGCGCAAGAAGAAGGTATACACGAAGCCCAAGAAGATCCCTCATAAG
CACAAGTCCGTCAAGCTCGCTACTCTCAAGTTCTACAAGGTTGAGGACGG
TGGGAAGGTGAAGCGATTGAGGAAGGACTGCCCGAAGTGTGGTGCCGGTG
TCCGTTTGGCCGTTCACAGTGATCGGTACTACTGCGGCAAGTGCACTGTG
ACAGTAAGTAATGGGTTTTTGATTGGAGAGGGGAGGATGAAGTGGGGGAT
AGAGCGAGAGGAAGAGAAACACAAACCTCACACTGAGTCAATAATTTGCT
CACTTATCACTTCTTTCCCCTTCTTCCACCGTACAGTACAAGTTCACCCA
GGAGATGGGCCAGGCTAGTTAGGTGAAAGTGGGAGGGGATGAAAAGAAGA
GCTCCCACGCCTTTTCTGGCCCCCAGAGCAACGACGACAAGATGGCATGA
GGAGCAAAGGACACAACAACAGAAAACCATGTTTACAAATCCGACTTTTA
AAACCAGGGAGTGAGAGGGCTGTGGAGGGAGGGTGAGGGAAGGAGGGAGG
GAGTTGATGGCTCCCCTCTGCGCAGGTGTTGTCTCGCCGGGAGGGCAGCA
ACTGGAAGAAGGAAGAACAAACGTCACCCCTTTTGAAGGCGCACACGAGA
CGGGATTT
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Coding sequence (CDS) from alignment at scaffold_3:1273894..1274801-

>mRNA_526 ID=mRNA_526|Name=jgi.p|Nanoce1779_2|577583|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_3:1273894..1274801- (Nannochloropsis oceanica)
ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGT
TGAGCCCAGCGACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGG
AAGGGATCCCCCCTGATCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTG
GAGGACGGCCGCACGCTTTCGGACTACAACATTCAGAAGGAGTCCACATT
GCACCTGGTTCTGCGCCTGCGAGGCGGAGGAAAGAAGCGCAAGAAGAAGG
TATACACGAAGCCCAAGAAGATCCCTCATAAGCACAAGTCCGTCAAGCTC
GCTACTCTCAAGTTCTACAAGGTTGAGGACGGTGGGAAGGTGAAGCGATT
GAGGAAGGACTGCCCGAAGTGTGGTGCCGGTGTCCGTTTGGCCGTTCACA
GTGATCGGTACTACTGCGGCAAGTGCACTGTGACAGTAAGTAATGGGTTT
TTGATTGGAGAGGGGAGGATGAAGTGGGGGATAGAGCGAGAGGAAGAGAA
ACACAAACCTCACACTGAGTCAATAATTTGCTCACTTATCACTTCTTTCC
CCTTCTTCCACCGTACAGTACAAGTTCACCCAGGAGATGGGCCAGGCTAG
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Synonyms
Publications