jgi.p|Nanoce1779_2|62034, mRNA_5257 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|62034
Unique NamemRNA_5257
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1263
Alignment locationscaffold_13:2181..3443 +

Link to JBrowse

Properties
Property NameValue
TranscriptId62120
TrackFilteredModels2
ProteinId62034
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:2181..3443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|62034gene_5257Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|62034mRNA_5257-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5257CDS_5257Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5257 ID=mRNA_5257|Name=jgi.p|Nanoce1779_2|62034|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp
ACAGGTGACAGCAGAGAAAAACGCGCTGGCTGCACGCCTTACTCGCCTGG
AGGCGGAGTTTGCGGCGGATGTCCAGGAGGCCAGGGAGGCAGGAAGGAAG
GAAGGGAAGCAGGAAGAGGAGGTCATCAAGGGGTTGAAGGCAGACGTGGC
CATATGGGCCAAGCGCTGCGAGGCGGAGGCCGAGGGAAGGGCCAGGGCGG
GGCAAGAAAGGAAGTTGTTGTGGGGGAGAAACGTCGGATGCAGGTGGAGA
TGGATCGATTGTTAAGGCAGGTGAGGTACCGAGATGATGTCATTGCGGTG
TTCAAGGAGACGTTGGAGGCGCATGGCTTGGATGACTTACCGCAGATAGG
CGCGCAGCTGGCCCTGTTGCATCGGCATATGGAGAAAGGGGGATGGGAGA
GGGAGGGAGGACAGGGGTCATCCGTAATGACGTTGATCAAGGAAGGGATG
GAGCACGCGGCGGCGCATTTAATGACCGTGGGAACGACGCAGGGGTGGGA
GACACGGGAGCTGCTAAAGAGGGCGGAGGAGTTGAAGGTGTATGGGGGGG
AAGTGGCAAGTTTGGTTCGCATGACCCAAGCCATGCTTCAGCAACAGCAG
CAACAGCAACAGCAAGAGCTGTGGCAGCAGGGTAAAGGAAGGGAGGGAGG
AGCGGCCGTATGGAAACTTCTGGAAGAGAATGATCGCGTCGCCAAGATTC
TTCGTGGGTTGTACCTGGACCTGCAACGCCTGGTTCAGCGTCTCCTCCCT
CCCTCCCTCCCTTCCTCCTCCTCAACAGTCACAGTAGGGAGGTACGAAAG
TCCTCTGCGTCGACCGGTAGGAGGAAGGAGGGAGGTAGGGGGCGTCTCGC
CCTATGCCTCTCCTGCATTGGATCGGCGTAGGCAGCCTTCTTCGTTTCTT
CCGGGGCGGAGCCACGGCAATGGTGGCAATAGCGGCAAGAGCAATAACTT
CTCATCACCCGTGCGCAGTCATGCGGCAGGCGAGGAGTTACTTTTGCGGT
CGACCTCTTTTTCCTATCAAGGGGGACAGAACTTTAACGACAACAACAAC
AAAATCAGCAGCAGTGGGAGCAGTTCTAGTAGGATGTTGCCTGCCGGCGG
AGGGATGAAAATGAGGATGACGACAGACGGTGCTGCTGCCTCTGGGGGAG
AAAAAGACGCCTTCTCCCTCCCGTTTTTCTTCTTTGGGGGGTAGCTTTGG
GAGGCAGCAGTGGAGGAAGAGAGGGAGAGAAGGAGGGAGGGGTGTTGACC
CGACATCAGGTTG
back to top

protein sequence of jgi.p|Nanoce1779_2|62034

>mRNA_5257-protein ID=mRNA_5257-protein|Name=jgi.p|Nanoce1779_2|62034|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MGQALRGGGRGKGQGGARKEVVVGEKRRMQVEMDRLLRQVRYRDDVIAVF
KETLEAHGLDDLPQIGAQLALLHRHMEKGGWEREGGQGSSVMTLIKEGME
HAAAHLMTVGTTQGWETRELLKRAEELKVYGGEVASLVRMTQAMLQQQQQ
QQQQELWQQGKGREGGAAVWKLLEENDRVAKILRGLYLDLQRLVQRLLPP
SLPSSSSTVTVGRYESPLRRPVGGRREVGGVSPYASPALDRRRQPSSFLP
GRSHGNGGNSGKSNNFSSPVRSHAAGEELLLRSTSFSYQGGQNFNDNNNK
ISSSGSSSSRMLPAGGGMKMRMTTDGAAASGGEKDAFSLPFFFFGG*
back to top

mRNA from alignment at scaffold_13:2181..3443+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5257 ID=mRNA_5257|Name=jgi.p|Nanoce1779_2|62034|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp|location=Sequence derived from alignment at scaffold_13:2181..3443+ (Nannochloropsis oceanica)
ACAGGTGACAGCAGAGAAAAACGCGCTGGCTGCACGCCTTACTCGCCTGG
AGGCGGAGTTTGCGGCGGATGTCCAGGAGGCCAGGGAGGCAGGAAGGAAG
GAAGGGAAGCAGGAAGAGGAGGTCATCAAGGGGTTGAAGGCAGACGTGGC
CATATGGGCCAAGCGCTGCGAGGCGGAGGCCGAGGGAAGGGCCAGGGCGG
GGCAAGAAAGGAAGTTGTTGTGGGGGAGAAACGTCGGATGCAGGTGGAGA
TGGATCGATTGTTAAGGCAGGTGAGGTACCGAGATGATGTCATTGCGGTG
TTCAAGGAGACGTTGGAGGCGCATGGCTTGGATGACTTACCGCAGATAGG
CGCGCAGCTGGCCCTGTTGCATCGGCATATGGAGAAAGGGGGATGGGAGA
GGGAGGGAGGACAGGGGTCATCCGTAATGACGTTGATCAAGGAAGGGATG
GAGCACGCGGCGGCGCATTTAATGACCGTGGGAACGACGCAGGGGTGGGA
GACACGGGAGCTGCTAAAGAGGGCGGAGGAGTTGAAGGTGTATGGGGGGG
AAGTGGCAAGTTTGGTTCGCATGACCCAAGCCATGCTTCAGCAACAGCAG
CAACAGCAACAGCAAGAGCTGTGGCAGCAGGGTAAAGGAAGGGAGGGAGG
AGCGGCCGTATGGAAACTTCTGGAAGAGAATGATCGCGTCGCCAAGATTC
TTCGTGGGTTGTACCTGGACCTGCAACGCCTGGTTCAGCGTCTCCTCCCT
CCCTCCCTCCCTTCCTCCTCCTCAACAGTCACAGTAGGGAGGTACGAAAG
TCCTCTGCGTCGACCGGTAGGAGGAAGGAGGGAGGTAGGGGGCGTCTCGC
CCTATGCCTCTCCTGCATTGGATCGGCGTAGGCAGCCTTCTTCGTTTCTT
CCGGGGCGGAGCCACGGCAATGGTGGCAATAGCGGCAAGAGCAATAACTT
CTCATCACCCGTGCGCAGTCATGCGGCAGGCGAGGAGTTACTTTTGCGGT
CGACCTCTTTTTCCTATCAAGGGGGACAGAACTTTAACGACAACAACAAC
AAAATCAGCAGCAGTGGGAGCAGTTCTAGTAGGATGTTGCCTGCCGGCGG
AGGGATGAAAATGAGGATGACGACAGACGGTGCTGCTGCCTCTGGGGGAG
AAAAAGACGCCTTCTCCCTCCCGTTTTTCTTCTTTGGGGGGTAGCTTTGG
GAGGCAGCAGTGGAGGAAGAGAGGGAGAGAAGGAGGGAGGGGTGTTGACC
CGACATCAGGTTG
back to top

Coding sequence (CDS) from alignment at scaffold_13:2181..3443+

>mRNA_5257 ID=mRNA_5257|Name=jgi.p|Nanoce1779_2|62034|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at scaffold_13:2181..3443+ (Nannochloropsis oceanica)
ATGGGCCAAGCGCTGCGAGGCGGAGGCCGAGGGAAGGGCCAGGGCGGGGC
AAGAAAGGAAGTTGTTGTGGGGGAGAAACGTCGGATGCAGGTGGAGATGG
ATCGATTGTTAAGGCAGGTGAGGTACCGAGATGATGTCATTGCGGTGTTC
AAGGAGACGTTGGAGGCGCATGGCTTGGATGACTTACCGCAGATAGGCGC
GCAGCTGGCCCTGTTGCATCGGCATATGGAGAAAGGGGGATGGGAGAGGG
AGGGAGGACAGGGGTCATCCGTAATGACGTTGATCAAGGAAGGGATGGAG
CACGCGGCGGCGCATTTAATGACCGTGGGAACGACGCAGGGGTGGGAGAC
ACGGGAGCTGCTAAAGAGGGCGGAGGAGTTGAAGGTGTATGGGGGGGAAG
TGGCAAGTTTGGTTCGCATGACCCAAGCCATGCTTCAGCAACAGCAGCAA
CAGCAACAGCAAGAGCTGTGGCAGCAGGGTAAAGGAAGGGAGGGAGGAGC
GGCCGTATGGAAACTTCTGGAAGAGAATGATCGCGTCGCCAAGATTCTTC
GTGGGTTGTACCTGGACCTGCAACGCCTGGTTCAGCGTCTCCTCCCTCCC
TCCCTCCCTTCCTCCTCCTCAACAGTCACAGTAGGGAGGTACGAAAGTCC
TCTGCGTCGACCGGTAGGAGGAAGGAGGGAGGTAGGGGGCGTCTCGCCCT
ATGCCTCTCCTGCATTGGATCGGCGTAGGCAGCCTTCTTCGTTTCTTCCG
GGGCGGAGCCACGGCAATGGTGGCAATAGCGGCAAGAGCAATAACTTCTC
ATCACCCGTGCGCAGTCATGCGGCAGGCGAGGAGTTACTTTTGCGGTCGA
CCTCTTTTTCCTATCAAGGGGGACAGAACTTTAACGACAACAACAACAAA
ATCAGCAGCAGTGGGAGCAGTTCTAGTAGGATGTTGCCTGCCGGCGGAGG
GATGAAAATGAGGATGACGACAGACGGTGCTGCTGCCTCTGGGGGAGAAA
AAGACGCCTTCTCCCTCCCGTTTTTCTTCTTTGGGGGGTAG
back to top
Synonyms
Publications