jgi.p|Nanoce1779_2|648039, mRNA_5255 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|648039
Unique NamemRNA_5255
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length479
Alignment locationscaffold_12:864142..865232 +

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Properties
Property NameValue
TranscriptId648125
TrackFilteredModels2
ProteinId648039
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:864142..865232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648039gene_5255Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648039mRNA_5255-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5255CDS_5255Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5255 ID=mRNA_5255|Name=jgi.p|Nanoce1779_2|648039|organism=Nannochloropsis oceanica|type=mRNA|length=479bp
ACCCACGAGACAGACAGGGGGCGACGAACACCAAAAAAAAGCGCATGGAT
ACCAACCCTTCCTTCGCTCTTCCTTACCTTACGCACATCCCATGACAGCC
AGCAGCCATGGTGGTCTATAATTTCAAGAAGATCCAGCCTGTGCCCGGGG
CAAGTGACTTTGTGGATATTGTCTTGACTCGCACGCAGCGCAAGACTCCC
ACGGTCATCCATCCCGGGTACAAGATCTCGCGCATCAGGGCCTTCTACAT
GCGCAAGGTCAAGTTTACCCAGCAGAACTACTCAGAACGCCTCCGCCAAA
TCCTCGCGGACTTTCCCCGTGTCGAGGACGTGCATCCTTTCTACGCCGAC
CTCATGAACATCCTTTACGACAAAGACCACTTCAAGCTCGCACTTGGCCG
CATCAACACCGCCAAGAACTTGATTGAGACCGTCTCTCGTGATTATGTGC
GTTTACTCAAGTACGGTGACTCGCTTTAA
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protein sequence of jgi.p|Nanoce1779_2|648039

>mRNA_5255-protein ID=mRNA_5255-protein|Name=jgi.p|Nanoce1779_2|648039|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MVVYNFKKIQPVPGASDFVDIVLTRTQRKTPTVIHPGYKISRIRAFYMRK
VKFTQQNYSERLRQILADFPRVEDVHPFYADLMNILYDKDHFKLALGRIN
TAKNLIETVSRDYVRLLKYGDSL*
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mRNA from alignment at scaffold_12:864142..865232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5255 ID=mRNA_5255|Name=jgi.p|Nanoce1779_2|648039|organism=Nannochloropsis oceanica|type=mRNA|length=1091bp|location=Sequence derived from alignment at scaffold_12:864142..865232+ (Nannochloropsis oceanica)
ACCCACGAGACAGACAGGGGGCGACGAACACCAAAAAAAAGCGCATGGAT
ACCAACCCTTCCTTCGCTCTTCCTTACCTTACGCACATCCCATGACAGCC
AGCAGCCATGGTGGTCTATAATTTCAAGAAGATCCAGCCTGTGCCCGGGG
CAAGTGACTTTGTGGATATTGTCTTGACTCGCACGCAGCGCAAGACTCCC
ACGGTCATCCATCCCGGGTACAAGATCTCGCGCATCAGGTATGCAGGAGG
GAGGGGAAAGGAGGGGGGAGGGTTAGAAGGGACATGGCAGGCGCGTGGCG
GTGGCACAGGCAGGTTGTGGGTAAAGCAAACGTATGTCTGCGTGGTCTTG
CTAAGCATAGACATGAAAGCGGGAATGAATGGCTCAGAGCCCCACCCGTC
AACCTCCCCACCTCCATATCACCCATCCAACCCCTTTCCTCCCTTCCTTT
CTCCTTCGATGCATTCAACAGGGCCTTCTACATGCGCAAGGTCAAGTTTA
CCCAGCAGAACTACTCAGAACGCCTCCGCCAAATCCTCGCGGACTTTCCC
CGTGTCGAGGTGCGTTGGGATGGCTGGCTGGATTCAGGGCTCGAGAGGGC
GAGGAGGGGGCATTAGGAGGAGGAGATAAATACAGGGGAGACTAGCGAGC
ATTGGGGGCCGTGAGCGCGAGATAGCGGCGCGGCACATTCCACCTGCAAT
TAGATCGCTGGGTTCGTGTCCCGTAAACTCATTTATTTCCTCTCACCTCT
TCCCTCCCTCGCTCCCTTCTTCCCTTCCTCTCGCTCCCTCGCTGCTAACC
TATCTCCTAGGACGTGCATCCTTTCTACGCCGACCTCATGAACATCCTTT
ACGACAAAGACCACTTCAAGCTCGCACTTGGCCGCATCGTAAGCGCTCCC
TCCTTCCCCTCCTCCCTTCTAACCCTTCCTTCCCTCCCCCTCCCTCCCTC
TCTCCCTCGTTTCCCTTCCTCCACCTCATGCCGCTCACCCCACCCTCACT
CCCTCCCTCTCTCCAGAACACCGCCAAGAACTTGATTGAGACCGTCTCTC
GTGATTATGTGCGTTTACTCAAGTACGGTGACTCGCTTTAA
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Coding sequence (CDS) from alignment at scaffold_12:864142..865232+

>mRNA_5255 ID=mRNA_5255|Name=jgi.p|Nanoce1779_2|648039|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_12:864142..865232+ (Nannochloropsis oceanica)
ATGGTGGTCTATAATTTCAAGAAGATCCAGCCTGTGCCCGGGGCAAGTGA
CTTTGTGGATATTGTCTTGACTCGCACGCAGCGCAAGACTCCCACGGTCA
TCCATCCCGGGTACAAGATCTCGCGCATCAGGGCCTTCTACATGCGCAAG
GTCAAGTTTACCCAGCAGAACTACTCAGAACGCCTCCGCCAAATCCTCGC
GGACTTTCCCCGTGTCGAGGACGTGCATCCTTTCTACGCCGACCTCATGA
ACATCCTTTACGACAAAGACCACTTCAAGCTCGCACTTGGCCGCATCAAC
ACCGCCAAGAACTTGATTGAGACCGTCTCTCGTGATTATGTGCGTTTACT
CAAGTACGGTGACTCGCTTTAAATGGTGGTCTATAATTTCAAGAAGATCC
AGCCTGTGCCCGGGGCAAGTGACTTTGTGGATATTGTCTTGACTCGCACG
CAGCGCAAGACTCCCACGGTCATCCATCCCGGGTACAAGATCTCGCGCAT
CAGGGCCTTCTACATGCGCAAGGTCAAGTTTACCCAGCAGAACTACTCAG
AACGCCTCCGCCAAATCCTCGCGGACTTTCCCCGTGTCGAGGACGTGCAT
CCTTTCTACGCCGACCTCATGAACATCCTTTACGACAAAGACCACTTCAA
GCTCGCACTTGGCCGCATCAACACCGCCAAGAACTTGATTGAGACCGTCT
CTCGTGATTATGTGCGTTTACTCAAGTACGGTGACTCGCTTTAAATGGTG
GTCTATAATTTCAAGAAGATCCAGCCTGTGCCCGGGGCAAGTGACTTTGT
GGATATTGTCTTGACTCGCACGCAGCGCAAGACTCCCACGGTCATCCATC
CCGGGTACAAGATCTCGCGCATCAGGGCCTTCTACATGCGCAAGGTCAAG
TTTACCCAGCAGAACTACTCAGAACGCCTCCGCCAAATCCTCGCGGACTT
TCCCCGTGTCGAGGACGTGCATCCTTTCTACGCCGACCTCATGAACATCC
TTTACGACAAAGACCACTTCAAGCTCGCACTTGGCCGCATCAACACCGCC
AAGAACTTGATTGAGACCGTCTCTCGTGATTATGTGCGTTTACTCAAGTA
CGGTGACTCGCTTTAAATGGTGGTCTATAATTTCAAGAAGATCCAGCCTG
TGCCCGGGGCAAGTGACTTTGTGGATATTGTCTTGACTCGCACGCAGCGC
AAGACTCCCACGGTCATCCATCCCGGGTACAAGATCTCGCGCATCAGGGC
CTTCTACATGCGCAAGGTCAAGTTTACCCAGCAGAACTACTCAGAACGCC
TCCGCCAAATCCTCGCGGACTTTCCCCGTGTCGAGGACGTGCATCCTTTC
TACGCCGACCTCATGAACATCCTTTACGACAAAGACCACTTCAAGCTCGC
ACTTGGCCGCATCAACACCGCCAAGAACTTGATTGAGACCGTCTCTCGTG
ATTATGTGCGTTTACTCAAGTACGGTGACTCGCTTTAA
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Synonyms
Publications